mRNA_Ecto-sp13_S_contig6112.16794.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6112.16794.1
Unique NamemRNA_Ecto-sp13_S_contig6112.16794.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6112.16794.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.380e-44
Identity = 91/168 (54.17%), Postives = 112/168 (66.67%), Query Frame = -2 
Query:    8 SMRTPDNCAPKSSWAWTRAVEEIEAQ---------GGGVGVDRDA--NRLAILRVGFKYLARDDPLAQELYENLVVFADSHSFQESDAAALVDDQE*VAGPI*ILERWGVLRADVSKQYRMHDAHVEFARDDLIAWGRMRKEAVERWTSLISRLDFAVRVDVYAMLNM 478
            S+RT  N  PKS+ AW R VEE+ AQ          G  G D D   NRLA+LR GFKY+ R+DPLAQELY  L VF +   F ESDAA L++++E   GPI ILERWGVLR D S++YR HDAH +FAR  L+    +R+ AVERWT  ISRLDFAV V+++ +L M
Sbjct:  386 SVRTT-NGVPKSNKAWERTVEELTAQIDHVRGQMKVGNTGEDNDRAINRLAVLRAGFKYIGREDPLAQELYVKLAVFPEGFLFGESDAAVLLENEEVAKGPISILERWGVLRTDASEKYRTHDAHADFARKKLMDRNDLREPAVERWTEHISRLDFAVGVEIFVLLPM 552
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BLAST of mRNA_Ecto-sp13_S_contig6112.16794.1 vs. uniprot
Match: A0A6H5L204_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L204_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.830e-33
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = -2 
Query:  260 SSMRTPDNCAPKSSWAWTRAVEEIEAQGGGVGVDRDANRLAILRVGFKYLARDDPLAQELYENLVVFADSHSFQ 481
            SS+RTPD+CAPKSSWAWTRAVEEIEAQGGGVGVDRDANRLAILR GF YLARD PLAQELY+ L  F D HSF+
Sbjct:   59 SSVRTPDSCAPKSSWAWTRAVEEIEAQGGGVGVDRDANRLAILRAGFMYLARDYPLAQELYDKLAAFPDRHSFR 132
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BLAST of mRNA_Ecto-sp13_S_contig6112.16794.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.110e-27
Identity = 72/162 (44.44%), Postives = 92/162 (56.79%), Query Frame = -2 
Query:    8 SWAWTRAVEEIEAQGGGVGVDRDA------NRLAILRVGFKYLARDD-PLAQELYENLVVFADSHSFQESDAAALVDD----------QE*VAGPI*ILERWGVLRADVSKQYRMHDAHVEFARDDLIAWGRMRKEAVERWTSLISRLDFAVRVDVYAMLNM 442
            S AW  AV +I      V  D D        RL ILR GF YL  ++  LAQ+LY  + VF D ++F  SDAA L++D           +  +  I ILERW VL  + S +YRMHD H++FARD +   G +RK  V RWTS ISRLDFAV  DVYA+ ++
Sbjct:  498 SGAWAEAVSKINDTIVDVREDADGMNDSQVKRLGILRAGFDYLGEEEGTLAQKLYVAIAVFPDGYAFGVSDAAVLLNDTHPPDPAPHHMKVASRAIEILERWAVLTMNASGKYRMHDTHMDFARDKIRDQGDVRKPVVRRWTSRISRLDFAVGRDVYALSDI 659
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6112.16794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JSI2_9PHAE1.380e-4454.17NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L204_9PHAE7.830e-3383.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE50_9PHAE4.110e-2744.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6112contigEcto-sp13_S_contig6112:2631..3112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size484
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463852.3950584-UTR-Ecto-sp13_S_contig6112:2630..26381681463852.3950584-UTR-Ecto-sp13_S_contig6112:2630..2638Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6112 2631..2638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463852.4070787-CDS-Ecto-sp13_S_contig6112:2638..31121681463852.4070787-CDS-Ecto-sp13_S_contig6112:2638..3112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6112 2639..3112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6112.16794.1prot_Ecto-sp13_S_contig6112.16794.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6112 2639..3112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6112.16794.1

>prot_Ecto-sp13_S_contig6112.16794.1 ID=prot_Ecto-sp13_S_contig6112.16794.1|Name=mRNA_Ecto-sp13_S_contig6112.16794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MFNIAYTSTLTAKSKREIRDVHLSTASLRILPQAIRSSLANSTWASCMRY
CFDTSALRTPHLSKIYIGPATYSWSSTSAAASDSWKEWLSANTTRFSYSS
WAKGSSLARYLKPTRRIASLLASLSTPTPPPWASISSTARVHAQLLLGAQ
LSGVRIEL
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mRNA from alignment at Ecto-sp13_S_contig6112:2631..3112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6112.16794.1 ID=mRNA_Ecto-sp13_S_contig6112.16794.1|Name=mRNA_Ecto-sp13_S_contig6112.16794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=482bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6112:2631..3112+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTTTACATGTTTAACATCGCGTACACGTCAACCCTGACCGCGAAGTCT
AAACGAGAGATAAGGGACGTCCACCTTTCCACGGCTTCCTTGCGCATTCT
ACCCCAAGCGATAAGATCGTCCCTCGCAAACTCGACGTGGGCGTCGTGCA
TGCGGTACTGCTTTGATACATCCGCTCTGAGAACACCCCACCTCTCCAAG
ATCTATATCGGTCCCGCTACTTACTCTTGGTCGTCCACAAGCGCAGCTGC
GTCCGATTCCTGGAAGGAATGGCTATCGGCGAACACCACGAGGTTTTCAT
ACAGCTCCTGGGCCAAAGGGTCGTCCCTCGCTAGGTACTTGAAGCCGACG
CGCAGAATTGCAAGTCTGTTGGCGTCTCTATCAACGCCAACCCCTCCACC
CTGGGCCTCGATTTCTTCCACGGCACGTGTCCACGCCCAGCTGCTCTTGG
GTGCGCAGTTGTCAGGAGTACGCATAGAGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6112:2631..3112+

>mRNA_Ecto-sp13_S_contig6112.16794.1 ID=mRNA_Ecto-sp13_S_contig6112.16794.1|Name=mRNA_Ecto-sp13_S_contig6112.16794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6112:2631..3112+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTAACATCGCGTACACGTCAACCCTGACCGCGAAGTCTAAACGAGA
GATAAGGGACGTCCACCTTTCCACGGCTTCCTTGCGCATTCTACCCCAAG
CGATAAGATCGTCCCTCGCAAACTCGACGTGGGCGTCGTGCATGCGGTAC
TGCTTTGATACATCCGCTCTGAGAACACCCCACCTCTCCAAGATCTATAT
CGGTCCCGCTACTTACTCTTGGTCGTCCACAAGCGCAGCTGCGTCCGATT
CCTGGAAGGAATGGCTATCGGCGAACACCACGAGGTTTTCATACAGCTCC
TGGGCCAAAGGGTCGTCCCTCGCTAGGTACTTGAAGCCGACGCGCAGAAT
TGCAAGTCTGTTGGCGTCTCTATCAACGCCAACCCCTCCACCCTGGGCCT
CGATTTCTTCCACGGCACGTGTCCACGCCCAGCTGCTCTTGGGTGCGCAG
TTGTCAGGAGTACGCATAGAGCTC
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