mRNA_Ecto-sp13_S_contig6111.16793.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6111.16793.1
Unique NamemRNA_Ecto-sp13_S_contig6111.16793.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 928 bits (2399), Expect = 0.000e+0
Identity = 504/531 (94.92%), Postives = 505/531 (95.10%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAKVVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLPGLESLDDRCSILVGP 1593
            FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAE AVRDSFGDEYVRKGDAK VKVKGSQEAHEAIRPALVGAT AA DT DGKQA EEE    XXXX      T GRFLHPTELPVEEDGG      RGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGE EVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCE ARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASK ATIDP+EAKRARLPGLESLDDRCSILVGP
Sbjct:  261 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEGAVRDSFGDEYVRKGDAKTVKVKGSQEAHEAIRPALVGATPAATDTADGKQAREEEXXXXXXXXXXXXXTTGGRFLHPTELPVEEDGGGG----RGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGE-EVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEDARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATIDPLEAKRARLPGLESLDDRCSILVGP 786          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 785 bits (2027), Expect = 1.580e-278
Identity = 441/482 (91.49%), Postives = 446/482 (92.53%), Query Frame = 1
Query:  151 TAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAKVVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEG-RFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLPGLESLDDRCSILVGP 1593
            TA G  GRSFEARLVEVGSKTVVTGKDFDPDTGEIKD LDASKLELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAA VAE AVRDSFG EYVRKGDAKVVKVKGSQEAHEAIRPALVGAT AA DT DGKQAGEE     XXXX        G RFLHPTELPVEE   XXXX  RGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGE EVVDVVLKASGKTTVF+GFLKAYR EGADESVPGGAAAEGDDQETELPLLVEGG+VVCE ARPAPHRTSPPRR+   SFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASK AT+DP+EAKRARLPGLESLDDRCSILVGP
Sbjct:   12 TACGGKGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDTLDASKLELLGSEKASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAARVAEGAVRDSFGGEYVRKGDAKVVKVKGSQEAHEAIRPALVGATPAATDTHDGKQAGEEXXXXXXXXXXXXXXXXXGGRFLHPTELPVEEXXXXXXX--RGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGE-EVVDVVLKASGKTTVFDGFLKAYRVEGADESVPGGAAAEGDDQETELPLLVEGGEVVCEDARPAPHRTSPPRRYR--SFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKRATVDPLEAKRARLPGLESLDDRCSILVGP 488          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A5D3YIY6_9BACT (DNA topoisomerase 1 n=1 Tax=Fodinibius salinus TaxID=860790 RepID=A0A5D3YIY6_9BACT)

HSP 1 Score: 345 bits (885), Expect = 6.850e-106
Identity = 226/534 (42.32%), Postives = 301/534 (56.37%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSSLE--VLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAKVVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLP--GLESLDDRCSILVG 1590
            +T++P++W  +APGLSAGRVQSVA+  +VERER R+KF+SA YWD+ A +    E    FEA L  +  K + +GKDFD +TG++K      K+ LL  + AS +   L+  E  V +V K R +R P A FITSTLQQE++RKL     +TM  AQ LYE G+ITYMRTD   LS +A   A  AV+D +G +Y+          K +QEAHEAIRPA                                       F  P E               GL      LYDL+++RT+A+ MA++E +FT V++ A      D + +V +   K SGK  +F GF +AY E G+D+  P  A A   +QE  LP L EG +V  E   P  H T PP RF+EA+ +KELE +GVGRPSTYASII T++ R Y    G++L P+ T F V +LL E+  D  D+ FT++ME KLD IA GE +  +YLSEYY GE GLKAKV  +   IDP +A++  LP  GL  ++    ILVG
Sbjct:  160 YTISPLLWKKIAPGLSAGRVQSVAVRFLVERERERMKFRSARYWDLKAKLHKLNESD-IFEADLTRLDGKRLASGKDFDENTGKLKKP---EKVVLLDDDSASELRDDLNGAEWEVSEVKKNRRKRNPSAAFITSTLQQEANRKLNFSAKRTMGVAQKLYENGHITYMRTDSARLSGQAINAARNAVKDEYGKKYLFDRPRNYGGQKAAQEAHEAIRPAG------------------------------------SYFKKPQEA--------------GLYGDQFKLYDLIWKRTIATQMAKAELEFTNVTIKA------DADGKVAE--FKTSGKEIIFPGFFRAYVE-GSDD--PNAALA---NQERFLPKLAEGEEVTEEGIEPTSHETQPPSRFTEATLVKELEKQGVGRPSTYASIISTIQNRGYAEADGKTLIPTFTAFAVTELLEENLHDVVDSDFTSQMEAKLDQIAHGELDTDQYLSEYYKGEKGLKAKVDEQEDEIDPDDARQLNLPLPGLNGIN----ILVG 621          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A521DC44_9BACT (DNA topoisomerase 1 n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521DC44_9BACT)

HSP 1 Score: 344 bits (883), Expect = 1.380e-105
Identity = 217/525 (41.33%), Postives = 303/525 (57.71%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASL--SSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAKVVKV-KGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLPGLESLD 1566
            +T++P++W  ++PGLSAGRVQSVA+  +VERER R+KFKSA Y+D+ A +  AGE    FEA L  +  K + +GKDFD +TG++K       + LL  +KAS +   L  +S  V+ VD +  +R P  PFITST+QQE++RK       TM  AQ LYE G+ITYMRTD   LS +A G A  AV + +G++Y+ +      K  KG+QEAHEAIRPA                                      RF+ P +               GL  +   LYDL+++RT+A+ MAE+E +FT V++ A             D   +A GK  +F G+ +AY E G+D+     AA E  +QE  LP + EG     +      H T PP RF+EA+ +KELE +GVGRPSTYASII T++ R Y   +G++L P+ T F V+ LL +HFPD  D+ FT+ +E+KLDA+A G ++ V+YL +YY GE+GLK+KV ++   IDP EAK   LP L++LD
Sbjct:  160 YTVSPLLWKKISPGLSAGRVQSVAVEFLVERERERMKFKSATYYDLKAKLHKAGE-NDEFEADLTHLNEKRLASGKDFDENTGKLKKP---KSVVLLDEDKASDLVDDLKNASWSVINVDVKTQKRNPAPPFITSTIQQEANRKFGFSARDTMSVAQKLYEKGFITYMRTDSTRLSGQAIGAARDAVTEEYGEDYLFERVRNYNKKGKGAQEAHEAIRPAG------------------------------------SRFVKPEKA--------------GLSGREFKLYDLIWKRTIATQMAEAELEFTNVTIRA--------TNNGTDADFRAGGKKILFPGYFRAYVE-GSDDPE---AALE--NQENFLPAMNEGDSTELDDLNFVSHETKPPARFTEATLVKELEKRGVGRPSTYASIISTIQDRGYAKSEGKTLIPTFTAFAVSTLLEKHFPDLVDSDFTSSLENKLDAVAEGTQDPVKYLEDYYNGENGLKSKVDTQEDKIDPQEAKLLDLP-LDNLD 615          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A6P0TUZ9_9CYAN (DNA topoisomerase (Fragment) n=2 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0TUZ9_9CYAN)

HSP 1 Score: 338 bits (867), Expect = 1.750e-105
Identity = 223/526 (42.40%), Postives = 293/526 (55.70%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSSLE--VLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAK-VVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLPGLESLDD 1569
            +TL+PV+W  +A GLSAGRVQSVA+ ++V RER R  FK   YWD+ A++  A +P   FE++LV +G   V TG DFD +TG+I +      + LL   +A A+   L +    V  V++R V+R+P  PF TSTLQQES+RKLR+G  QTMR AQ+LYE G+ITYMRTD   LS EA   A   V   +G EY+     +   K KG+QEAHEAIRPA             GK                        F  P E               GL  Q  ALYDL+++RT+A  MA+S     TV+L            +V D   +++GK   F GFL+AY E G+D+     AA E  DQE  LP L +G +  C+      H T PP RF+EAS +K LE++G+GRPSTYAS+IGT+  R Y  LQ  +L P+ T F V  LL +HFP+F D  FTA+ME  LD I+ GE + + YL E+Y GE GL  ++  +   IDP   K AR   L++LDD
Sbjct:  160 YTLSPVLWKKIAWGLSAGRVQSVAVRLLVNRERQRRAFKQGGYWDLKASLEQAKKP---FESKLVTLGGTKVATGSDFDENTGKIAE---GRNVVLLDEAQAEALKERLQNKPWTVNSVEERAVKRKPSPPFTTSTLQQESNRKLRMGARQTMRTAQSLYEQGFITYMRTDSVHLSDEAIAAARSCVEKMYGPEYLSPQPRQYTTKSKGAQEAHEAIRPA-------------GKT-----------------------FRTPQET--------------GLNGQELALYDLIWKRTVACQMADSRQTHITVNL------------QVEDAGFRSNGKRIDFPGFLRAYVE-GSDDPE---AALE--DQEVPLPPLKQGDRPNCKDIEVVGHETQPPARFTEASLVKTLESEGIGRPSTYASVIGTIVDRGYAKLQSNALVPTFTAFGVTSLLEKHFPEFVDVKFTARMEQTLDDISTGEVQWLPYLREFYSGESGLDTQIKEQEEHIDP---KLARTIELDNLDD 608          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A2T1C480_9CYAN (DNA topoisomerase 1 n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C480_9CYAN)

HSP 1 Score: 343 bits (881), Expect = 5.960e-105
Identity = 224/522 (42.91%), Postives = 287/522 (54.98%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSS--LEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVR-KGDAKVVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLPGLE 1557
            +TL+P++W  +A GLSAGRVQSVA+ ++V RERARL FK   YWD+ A +       + F A+LV V    + TG DFDPDTG+I   +   K+ LL  E A A+ A L      V  +++R V R+P  PF TSTLQQES+RKLRL   +TMR AQ+LYE GYITYMRTD   LS +A   A   V + +G EY+  K      K KG+QEAHEAIRPA  G++                                  F  P E               GL  Q  +LYDLV++RT+A  MA+S     +V L            EV D   +A+GK   F G+L+AY E G+D+     AA E  DQE  LP L  G    CE     PH T PP RF+EAS +K LE++G+GRPSTYASIIGT+  R Y  +Q ++L P+ T F V  LL +HFPD  DT FTAKME  LD I+ GE + + YL ++Y GE GL   V  + + ID  +A+   L  LE
Sbjct:  160 YTLSPLLWKKIARGLSAGRVQSVAVRVLVNRERARLAFKQGSYWDLQALLV---HKTQKFGAKLVTVAGVKIATGADFDPDTGQI---IAGKKVTLLNEEDAKALQARLIEEIWTVKDIEERAVNRKPSPPFTTSTLQQESNRKLRLSARETMRVAQSLYEQGYITYMRTDSVHLSDQAIEAARSCVMEKYGAEYLSPKPRQYTTKAKGAQEAHEAIRPA--GSS----------------------------------FRTPRET--------------GLNGQELSLYDLVWKRTVACQMADSRQTHISVDL------------EVADAGFRATGKRIDFPGYLRAYVE-GSDDP---NAAIE--DQEVILPPLKAGDHPECEKLEAIPHETQPPARFTEASLVKTLESEGIGRPSTYASIIGTIADRGYAKMQSQALVPTFTAFAVTTLLEKHFPDLVDTSFTAKMEQTLDDISTGEAQWLPYLKKFYSGETGLDTLVKQQESQIDRAQARTIELDHLE 607          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A345UGM9_9BACT (DNA topoisomerase 1 n=1 Tax=Candidatus Cyclonatronum proteinivorum TaxID=1457365 RepID=A0A345UGM9_9BACT)

HSP 1 Score: 342 bits (878), Expect = 1.250e-104
Identity = 220/539 (40.82%), Postives = 302/539 (56.03%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASL---SSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAK-VVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAG-------------GVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLPGLESLD 1566
            +T++P++W  +APGLSAGRVQSVA+ ++V+RER R++F+S  Y D+ A +   G+   +FEA + E+  K + +GKDFD +TG++K K DA  +ELL  E+A A+   L   +S +VL+VD +  +R P  PF TSTLQQES+RK       TMR AQ+LYE G+ITYMRTD   LS +A   A   V   +GDEY+ + + +   K K +QEAHEAIRPA                                       F  P E               GL+ +   LYDL+++RT+A+ MAE+   FT V +                G S  DG  E      KASGK  +F G+ +AY E G+D+       A+ +DQ+  LP L E  ++ C+      H T PP RF+EA+ IK LE +GVGRPSTYASIIGT++ R Y   +G +L PS T F V +LL  HFPD  DT FT++ME++LD IA G  +R+ Y+  Y+ GE GLK  V  + + IDP  A+R  LP +E LD
Sbjct:  160 YTISPLLWKKIAPGLSAGRVQSVAVKLIVDRERERMRFRSGTYCDLKAVLNPEGKKS-TFEAEMSELNGKRLASGKDFDENTGKLK-KPDA--VELLNIEQAEALKEQLLSKASWQVLQVDTKEQKRSPAPPFTTSTLQQESNRKFGFSAGDTMRVAQSLYEQGFITYMRTDSTFLSNQAIAAARSGVSALYGDEYLSEKERRYATKSKAAQEAHEAIRPAG------------------------------------SHFRVPNET--------------GLDGRELKLYDLIWKRTVATQMAEARIAFTNVLISGQIPPAKDVLSGPLEGKSRPDGSLEAR---FKASGKKILFPGYFRAYVE-GSDDP-----EAQLEDQDKPLPALNEADELACKKLEAVTHETKPPARFTEATLIKFLEKEGVGRPSTYASIIGTIQDRKYAQKEGSALVPSFTAFAVTELLETHFPDVVDTHFTSEMENQLDEIAHGNYDRLSYIRSYFEGEKGLKENVEKQESQIDPALARRINLP-IEGLD 634          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A1J0AEK9_9CYAN (DNA topoisomerase 1 n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1J0AEK9_9CYAN)

HSP 1 Score: 342 bits (877), Expect = 1.820e-104
Identity = 220/534 (41.20%), Postives = 292/534 (54.68%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASL--SSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVR-KGDAKVVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLPGLESLDDRCSILVGP 1593
            +TL+P++W  V PGLSAGRVQSVA+ ++V+RER R  F++A+YWD+ A +TA   P   FE+RLV +G   + TG+DFDP TGE+   L   ++ +L   +A  +   L  S+  V  ++ R+V+R+P  PF TSTLQQE++RKLRL    TMR AQ LYE GYITYMRTD   LS++A   A   V+  +G  Y+  K      + KG+QEAHEAIRPA                        G    +       GR L                          ALYDL+++RT+A+ MAE+     TV++ AG            +   + SGK   F GF +AY E G+D+  P  A    DDQE  LP L  G    C       H T PP R++EAS +K LE++GVGRPSTYASIIGT++ R Y   +G +L P+ T F V  LL ++FP   DTGFTA+ME  LD IA GE   + YL E+YLGE GL ++V ++ ATI P  A+   L GL       S   GP
Sbjct:  174 YTLSPLLWQKVGPGLSAGRVQSVAVRLLVQRERQRRAFRTAEYWDLKAQLTAHQTP---FESRLVALGGVKLATGQDFDPQTGEL---LPRRRVRVLDQTQAETLCQQLQGSTWRVQDLESRQVQRKPAPPFTTSTLQQEANRKLRLSTRDTMRIAQNLYEQGYITYMRTDSVHLSQQAITAARSCVQQMYGASYLSPKPRQYATQSKGAQEAHEAIRPA------------------------GSDFRTPQVTGLTGREL--------------------------ALYDLIWKRTVATQMAEARLTHLTVTIQAG------------EAEFRTSGKRIDFPGFFRAYVE-GSDD--PQAAL---DDQEISLPPLAVGDTPQCTRLEALRHETQPPDRYTEASLVKTLESEGVGRPSTYASIIGTIQDRGYAQTEGNALVPTFTAFAVTTLLEQNFPHLVDTGFTAQMEQTLDDIAGGEVPWLPYLQEFYLGEQGLASRVKTQAATISPTTARTLELEGLGEAKVHISTRYGP 633          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A6A8Q780_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q780_9BACT)

HSP 1 Score: 341 bits (875), Expect = 2.010e-104
Identity = 218/528 (41.29%), Postives = 301/528 (57.01%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASLSSLE--VLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAKV-VKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYRE--EGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLP--GLESL 1563
            +T++P++W  ++PGLSAGRVQSVA+  +V RER R+KFKSA Y+D+ A+++  G     F A L  +  K + +GKDFD +TG++K K DA  + LL  EKAS +   L   +  V KVD ++ +R P  PFITSTLQQE++RK       TM  AQ LYE G+ITYMRTD   LS +A G A  A+ D +G++Y+ +       K K +QEAHEAIRP                              S S      RF+HP +               GL  +   LYDL+++RT+++ MA++E +FT V++ A        E    D   + SGK  +F GF +AY E  +  DE++        ++QE  LP L EG            H T PP R++EA+ +KELE +GVGRPSTYASII T++ R Y    G+ L P+ T F V+ LL  HFPD  D+ FT+ +EDKLDA+ARG+++ V+YL +YY GE+GLKAKV  +   I+P EAK   LP  GLE +
Sbjct:  160 YTVSPLLWKKISPGLSAGRVQSVAVEFLVVRERERMKFKSAIYYDLKADLSKTGT-SEEFNADLTHLDEKRLASGKDFDENTGKLK-KPDA--VVLLDEEKASKLVDDLKEADWSVSKVDVKKQKRNPAPPFITSTLQQEANRKFGFSARDTMSVAQKLYEKGFITYMRTDSTKLSGQAIGAARDAITDQYGEDYLFERVRNYGSKSKSAQEAHEAIRP------------------------------SGS------RFVHPEKT--------------GLRGREFKLYDLIWKRTISTQMAQAELEFTNVTIRA------TNEDTTAD--FRTSGKKILFPGFFRAYVEGSDNPDEAL--------ENQEKYLPPLNEGDSTELNNLDFVSHETKPPARYTEATLVKELEKRGVGRPSTYASIISTIQNRQYARSDGKRLIPTFTAFAVSSLLENHFPDLVDSDFTSSLEDKLDAVARGKQDPVKYLDDYYKGENGLKAKVDQQEDKINPQEAKLLDLPLDGLEGI 617          
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Match: A0A2D8CJG1_9BACT (DNA topoisomerase 1 n=5 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CJG1_9BACT)

HSP 1 Score: 341 bits (874), Expect = 2.880e-104
Identity = 217/526 (41.25%), Postives = 306/526 (58.17%), Query Frame = 1
Query:    1 FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSEKASAVAASL--SSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAKVVKV-KGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGXXXXSASTNATEGRFLHPTELPVEEDGGXXXXXXRGLEEQHRALYDLVYRRTLASAMAESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEGADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEASFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLLREHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVASKTATIDPVEAKRARLP--GLESL 1563
            +T++P++W  ++PGLSAGRVQSVA+  +V+RER R+KFKSA Y+D+ A +   G+  + F+A L  +  K + +GKDFD +TG++K K D   + LL  +KAS++   L  +S  V+ VD +  +R P  PFITSTLQQE++RK       TM  AQ LYE G+ITYMRTD   LS +A   A  AV + +GDEY+ +      K  K +QEAHEAIRP                              S S      RF+ P +               GL ++   LYDL+++RT+++ MA++E +FT V++ A             D   +A+GK  +F GF +AY E G+D+     AA E  +QE  LP + EG     +      H T PP RF+EA+ +KELE +GVGRPSTYASII T++ R Y    G++L PS T F V+ LL +HFP+  D+ FT+++EDKLDA+A G ++ V+YL +YY GE+GLKAKV ++   IDP EAK   LP  G+E +
Sbjct:  160 YTVSPLLWKKISPGLSAGRVQSVAVEFLVQRERERMKFKSATYYDLKAQLHKEGDKDK-FDADLTHLNEKRLASGKDFDENTGKLK-KPD--NVVLLDEDKASSLVDDLKEASWSVINVDVKTQKRNPSPPFITSTLQQEANRKFGFSARDTMSVAQKLYEKGFITYMRTDSTRLSGQAISAARDAVTEEYGDEYLFERVRNYNKKGKSAQEAHEAIRP------------------------------SGS------RFVKPEKA--------------GLRDREFKLYDLIWKRTISTQMAQAELEFTNVTIRA--------TNNGTDADFRANGKKILFPGFFRAYVE-GSDDPE---AALE--NQEIYLPPMAEGDTTALDDLDFVSHETKPPARFTEATLVKELEKRGVGRPSTYASIISTIQNRGYAKSDGKTLIPSFTAFAVSSLLEKHFPNLVDSDFTSQLEDKLDAVASGTQDPVKYLEDYYNGENGLKAKVDTQEDKIDPQEAKLLDLPLEGMEGI 617          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6111.16793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU2_ECTSI0.000e+094.92DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A6H5KCV2_9PHAE1.580e-27891.49TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5D3YIY6_9BACT6.850e-10642.32DNA topoisomerase 1 n=1 Tax=Fodinibius salinus Tax... [more]
A0A521DC44_9BACT1.380e-10541.33DNA topoisomerase 1 n=1 Tax=Gracilimonas mengyeens... [more]
A0A6P0TUZ9_9CYAN1.750e-10542.40DNA topoisomerase (Fragment) n=2 Tax=unclassified ... [more]
A0A2T1C480_9CYAN5.960e-10542.91DNA topoisomerase 1 n=1 Tax=Merismopedia glauca CC... [more]
A0A345UGM9_9BACT1.250e-10440.82DNA topoisomerase 1 n=1 Tax=Candidatus Cyclonatron... [more]
A0A1J0AEK9_9CYAN1.820e-10441.20DNA topoisomerase 1 n=2 Tax=Cyanobacteria TaxID=11... [more]
A0A6A8Q780_9BACT2.010e-10441.29DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium... [more]
A0A2D8CJG1_9BACT2.880e-10441.25DNA topoisomerase 1 n=5 Tax=Balneolaceae TaxID=181... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6111contigEcto-sp13_S_contig6111:3..6829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score937.2
Seed ortholog evalue3.4e-270
Seed eggNOG ortholog2880.D8LDU2
Model size1593
KEGG koko:K03168
Hectar predicted targeting categorysignal peptide
Exons10
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
Cds size1593
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6111.16793.1prot_Ecto-sp13_S_contig6111.16793.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6111 3..6829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463852.2474272-CDS-Ecto-sp13_S_contig6111:2..381681463852.2474272-CDS-Ecto-sp13_S_contig6111:2..38Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 3..38 -
1681463852.2657392-CDS-Ecto-sp13_S_contig6111:1046..12081681463852.2657392-CDS-Ecto-sp13_S_contig6111:1046..1208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 1047..1208 -
1681463852.2762816-CDS-Ecto-sp13_S_contig6111:1514..17221681463852.2762816-CDS-Ecto-sp13_S_contig6111:1514..1722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 1515..1722 -
1681463852.2850199-CDS-Ecto-sp13_S_contig6111:2150..22501681463852.2850199-CDS-Ecto-sp13_S_contig6111:2150..2250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 2151..2250 -
1681463852.2944825-CDS-Ecto-sp13_S_contig6111:2825..29461681463852.2944825-CDS-Ecto-sp13_S_contig6111:2825..2946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 2826..2946 -
1681463852.303488-CDS-Ecto-sp13_S_contig6111:4042..44191681463852.303488-CDS-Ecto-sp13_S_contig6111:4042..4419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 4043..4419 -
1681463852.3128116-CDS-Ecto-sp13_S_contig6111:4822..49461681463852.3128116-CDS-Ecto-sp13_S_contig6111:4822..4946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 4823..4946 -
1681463852.3282442-CDS-Ecto-sp13_S_contig6111:5494..56771681463852.3282442-CDS-Ecto-sp13_S_contig6111:5494..5677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 5495..5677 -
1681463852.3421803-CDS-Ecto-sp13_S_contig6111:5853..59661681463852.3421803-CDS-Ecto-sp13_S_contig6111:5853..5966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 5854..5966 -
1681463852.3576758-CDS-Ecto-sp13_S_contig6111:6660..68291681463852.3576758-CDS-Ecto-sp13_S_contig6111:6660..6829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6111 6661..6829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6111.16793.1

>prot_Ecto-sp13_S_contig6111.16793.1 ID=prot_Ecto-sp13_S_contig6111.16793.1|Name=mRNA_Ecto-sp13_S_contig6111.16793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=531bp
FTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANV
TAAGEPGRSFEARLVEVGSKTVVTGKDFDPDTGEIKDKLDASKLELLGSE
KASAVAASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQT
MRAAQALYEAGYITYMRTDRPSLSKEAAGVAEVAVRDSFGDEYVRKGDAK
VVKVKGSQEAHEAIRPALVGATLAAADTPDGKQAGEEEEEAGSGAGSAST
NATEGRFLHPTELPVEEDGGGGGGRGRGLEEQHRALYDLVYRRTLASAMA
ESEADFTTVSLGAGGVSLGDGEQEVVDVVLKASGKTTVFEGFLKAYREEG
ADESVPGGAAAEGDDQETELPLLVEGGKVVCEAARPAPHRTSPPRRFSEA
SFIKELEAKGVGRPSTYASIIGTLRTRTYVNLQGRSLTPSLTGFVVADLL
REHFPDFTDTGFTAKMEDKLDAIARGEKERVEYLSEYYLGEDGLKAKVAS
KTATIDPVEAKRARLPGLESLDDRCSILVGP
back to top

mRNA from alignment at Ecto-sp13_S_contig6111:3..6829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6111.16793.1 ID=mRNA_Ecto-sp13_S_contig6111.16793.1|Name=mRNA_Ecto-sp13_S_contig6111.16793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6827bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6111:3..6829- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCACCCTGACCCCGGTCATCTGGAACTTCGTGGCTCCGGGGCTAAGCGC TGGACGGGTGCAGAGCGTGGCGCTGGCGATGGTGGTCGAGCGCGAGCGCG CTCGCCTCAAGTTCAAGTCCGCGGACTACTGGGACGTGGTCGCCAACGTT ACCGCCGCGGGGGAGCCTGGTAAGCCCCCACCTCCGCAGAGTGGAGTCTG GGATCTCGGATAGTGAGGGTGATAGCATAACTAGCTGGGATAGGCCAAGG TTTTGGGGGGAGGGCAAAAAGGCGGGGCGGGGGGTCGGTTGCCTGTGATC GTCCTTTGTCCCGTGATTCATTTTGACTCAAACATGTCAGGTGAAGGGTG GGAGGTATTGAGTACTTTTCCTTCCCGGCTTTCGCAAAGCTGCTGCCTGC GTTTTAGAGCTCTTCACGGTGGTGGTGGTGGGTGGTGGTGGTGATGGTGG TTGTGGTACAGTCCCTCCAATCGGAAACATTCCAGAAGCAAGCAGCGGGG AAACAAGTATTCTTTGCTCTCAGGCTCACCCCCACCCTACTCTCTCCGTA TTTTATTCACTTGCCATTTCATTTGCTGCTTTTGTGACCATGTAATTTCG CTCGATCTCGCAGCAACGCACGCAGCAGCGTGTCTTCGTCCTTGGACTTG CCAATCCCTAAGTTGGACATGCACATGTCGCTGATGCCCGCTATGGCTAT GTGTCTTTGTCCTTGAACAAGCCTAATCCTAAGTTGGACACGCACATGCC GTTGATGCGCGCTGTGGCTGTGTGTCCCTTTTATTTGAACAAGCCTAATC CTAAGTTGGACATGCACACTGCCCTTGATGCGCGCCCTTCACAAACTGTG TGTGGGGAAAAAGGTCGGTCGTTCGAGGCCCGTTTGGTGGAGGTGGGATC CAAGACCGTCGTGACGGGCAAGGACTTCGATCCGGACACTGGGGAGATCA AGGACAAGCTCGACGCCTCCAAGCTCGTGAGTGCGCCTTCCTGCCGGCCT TTAGTCGAAAGCTCGTCGCCTCTCCTCGTCGCTGCGCAATCATGCTACGC ACGTCCTTCGGCTCATGTCTTCTCTGTCATGTCGAAAAATCTTTTCTTTT CTGCTGTTCATGTACGCATGTGTTCCTTTCTTCTTCTTTTTTGTTTTCGT AGGAACTTCTTGGTTCGGAGAAAGCGTCGGCCGTGGCGGCGTCGCTGTCG TCCCTCGAGGTGCTCAAGGTCGACAAGAGACGGGTCAGGCGGCAGCCTCC TGCCCCCTTCATCACGTCCACGCTGCAGCAGGAGTCGAGCCGAAAGCTCC GGCTGGGAGTGGATCAGACCATGAGGGCGGCGCAGGTCAGCAAGGGGGGG GGGTGACGGTGTGTAAATTTGATCTTGGGGGGCGGGGTGTGTGTGTGAAG GGGATATTCTCATCGTCGAGCATGCCGAAGTCGTTAGAGCATTTACCTTG CATGCCTTCAAAACCGGGACGGAGCACGCCGGGTTCTTACCGGACCAGAC TCTCACATCACCAAGCGCTTTTTTTTGTTTCATCTTGGGGGGAAGGGGGG GGCAGTACTCAATGAGCGTTTGTCGCACAGCTGTAGTGTAGTGCCGTATG TACATGGCATACTTGCAATGCTGGAACCACCGAGGCTGCTGTTGCTACTG TATGGCATCGCGTCTAGCATGAAGTTGACTCCTCCTTGCTTGCCGTTTTT TCTTGGTCTAAGCCTTATGCTAAGCTAATATGTCGCGGTATCTTGCAGCC CTTGTTCCGCCGCAAACAGGAATAAGATGCTGTTTTCAACGATTTCGGGA ATTCGCAGTTTCCATCCATTTCTTTTTTTTTGTGTTTCTCACCTTTGCTT GCCTTTGCCCCTTTTTCTTTCGGCGTTTCTCAGGCCCTGTACGAGGCGGG GTACATCACCTACATGCGCACGGACAGGCCCAGCCTGAGCAAGGAAGCCG CCGGGGTGGCTGAGGTTGCGGTGAGAGACTCCTTCGGCGACGAGTACGTG CGGAAGGGTAAGAAGCGATTATGAAGGGGCTTAGTTTGATCTTTTGATTT CAGGGTTTCCTCGTCGAAGACGTCAGCCTGAGTGTCATGTTTTGAAAGCC GTCGTTTCTCGTTCCCTCTCTCTCTCTTGCTACCCCGTTCTTTCTCTGCA TCTTTGTAGCTGTCTGTCTATGTTTCTGTGTGTCTCGTCTACTGTCTCTG TTTCGCGGTCTCACGAGGACGATGGGCGATCATGTCCCCGCCCTCCTCCC GCGCCGCTGGACACAACATTTATTCAGATAGACAAAGACATTTTAAACAT CTGCGCGTGCCGCTCTCGCACCGCTGTCCCTTCTGGCAAGTGTGCGCCCC TTGACCGCCGCACGCCGTGGAAACATTATTGTTTGTCCTTTTTCCCTCCT CACTCGAAAGGGGACGCTAAGGTTGTCAAGGTCAAGGGCAGCCAGGAGGC GCACGAGGCCATCCGCCCTGCCCTTGTCGGCGCAACCCTCGCTGCGGCCG ATACTCCCGACGGAAAGCAAGCGGGAGAGGAGGAGGAGGAAGCGGGGTCA GGGGCTGGGTCAGCCTCGACTAATGCGACCGAGGGGAGGTTCTTGCATCC TACGGAGCTCCCTGTAGAGGAAGACGGCGGCGGCGGCGGCGGCCGCGGCC GCGGCTTGGAGGAGCAGCACAGGGCGCTGTACGACCTGGTGTACCGGCGG ACGCTGGCCAGCGCCATGGCGGAGTCGGAGGCGGACTTCACGACGGTTTC GCTGGGAGCGGGAGGCGTTTCTCTGGGGGACGGCGAGGTACGCGCGTGCA GGGTGTACCCATGTAAACCACATGCCATATTAAGTCGTTAGACCCTTGCA TCCCTTCAATGCCTGGACGGAGGAGCGATGTGCCGGGTAATCGCCGGCCC AGTCGGGGCGTATTGTGTGTGTAGCGGCGTTCGTCAAGTGCGACGGGTGG TGTGTCGGAAGTTCAAAGTTAGTTGCAGGTGTGTGACAGGTTTGGCTGTT CTCGTGCTGAAAGTGAGGTCCGGTTAGGCTTGTGTGGTCCTTGAAACCGT CTCGCGAAAGGGTTGAAGTGCGGCTGTGGCACAGCAGTGCTTTGTTGTGC TTGGTACACACCTCAGCATAGACCTTTCGGACAAAGTCGTGGGGGTCTGG GTGTATCTTTCGTGAGACGGTAGATGGACGGCAGCAGCAGGAGGAGCAGC AGCAGCAGTCAGAAGACGTGAGCAATTGGGAGAGCGTGAGGTGGATTTGC TTTTCATGACGCCACGACGGCGTGAATAGAAAGGGAGGGGAAGTCTCTTC GGGTTTAACCGGTTTGTGAAACCAATGTTTGTGGAACTAACCCTTCCGAA ACGATTGGTGCAGCAGAGGAAGAACTGCGTAGCTATGCGAGAGTTCTGAA CTCGTGAAGGGGGAGTGGGGAGGGGTCGAGAAGCGGAGTATTTTTTGTTG TTTCTGAAGCCCCTTCACTCTGTTCCTCTCTTGTACCACCTCGTAACCGC TTTGCCCCTTCGCGTTTACGTCCTACCCTCACGCACGAACGTCGGAGAGA TGAATCTCTCGTTGCGTGATTCCTGGTTTGCTGTTACAGTTTGCGGAGCC TAGACGTAACTTCACACACTAAGGAGGGACCCCGACCCTCCGGGTAGTGC ACCTCTTTCTGCGTTTTTTTCTGTTTCGTCATTCTACAATACACGACTGC GCCGGCTGGCATCTGGCTAGCAAGTGTCCATGGGGCTTTGATTATTTCGG CGATATGCAACATCCACAGGTTGGACCGTAACGATGAGCATCAACATCGC CCTTGAACCGTAAGTAGCAACAACGCCTTTCAACCCTGACAGTGGTTATT ACAACAAGCGCGTTTGCGACCTTTCACGAAAAGCAGGAGGTGGTGGACGT GGTGCTGAAGGCGTCGGGCAAGACGACGGTTTTCGAGGGGTTCTTGAAGG CGTACAGGGAGGAGGGGGCCGACGAATCTGTCCCCGGTGGCGCTGCGGCG GAAGGTGAGCGCGGAATAGATCACTCTGCCGCGTGTACACATGTATCGAT GTCCCACACCACGGGGCGACCTGCGCAGGATTTTAAGAGTATCTAAAACA AGATTAGGGAGGGGGCACGCAGACCCTATCCCTAACCATACCCTAACCTT AACCCCAAAGCACGGATTCTTTATCACATATGTTTGCTTAATCAATTTTG CGGCGTAGACTACTGACACCACGAGGCATCACCACCAACAAAATTGTACA TGTGTTAAGTCTAGGCGTTCAGCTGCTCGAGCTATTTGCACTTACTATGG GCTAGTGTTCTAACGACACAATCACACACGGCTGGTTGGGAAATGTCGTA CGTTGTACCCTCTGGTTTCACTCATTTTATTATGTTCACCTCTTCAGGGC GTTGTCTAGTTGAAGTGAGGAGCTAGCTTACCTGAGCTAGCTTAAGTTGT TCACCACTGTACTGGTGTTTCCCTAAGTGCGCACAATCTACACCTCATCG AGTATCCGCCGCCTTCACGCCCCCTGACCCCCCCCCACCCCCTCACGGGT GTTGCAACGCTGCTGTACCGCTTGTTTAGGGGATGACCAAGAGACTGAGC TTCCGTTGTTGGTGGAAGGCGGGAAAGTGGTGTGCGAGGCCGCTAGACCA GCGCCACACCGCACGTCACCCCCTAGAAGGTACCGTAGGTTAGGGTATGG TACAGTGCGGTATGCGTGCCACAAGATGAGACAAGGCGGGCCCCGTGGTA GGCTGGCGTAAACCAGAGAGGCAAGGGCGGATAAAGCTGAAGGAGTCGTC GTCGTTGTTATTGCTGCTGCTGCTGTTGTTTTTTGTTGTCGTTGCTGCTA CTGCTGCTGCTGCTGCTGCTGTTCTTTGTTCTTTGTTCTTTGTTCGTGTC CGTGTCCTGTTGTCGTTGTGTTTGTTGTTTAGCTCGTCGTCCGCCGATGT CGCCGAAGTTTAAGTTCCATTCCAAGGAACTCCCACGACACCTCACCCAG TTGTGCCCCTTCTCGGGTAAGCAGTCCTCCACTTCTTGTGTTTTATTCCT TCAGATTCCCCGTCGCCCTTCCCCTCCCCCCCCCCCCCCCCCCGCCTCCT TTCGAAGGTTTTCGGAGGCCAGCTTCATCAAGGAGCTCGAGGCGAAGGGG GTCGGGCGTCCCTCCACCTACGCGAGCATCATCGGTACCCTTCGGACAAG GACGTACGTAAACCTGCAGGGACGAAGCCTGACGCCGAGCCTTACGGGCT TCGTGGTGGCGGACCTGCTCCGGGAGCACTTCCCGGATTTCACCGACACC GGCTTCACGGCAAAGGTGCGCCTGCGTGTGTTGTTCTCAACATAACCCCG CCCTGAGCTTGCGCATGAGTTCATGCCCGTTGTTATGAATAATTAACGGT ATGGTGTTGTTGGTTGGTCGGTCGCTACCGTATCACTTGGAAAGTACCCT GTCATGGCGTACACAATTGTGCGGCGATATTTGCACGCCACACCTGTACT GCATGACCCCCACACCGAAGATGTCCCCCCTCGCGCCCCACCGGCCGCTC TGTTTTACTCCTGCCGTGCTTAATATTGCCGATGCTCTGCGGCACGCGCC ACTGCTGCTTTACGTACGTAGATGGAGGACAAGCTGGACGCCATAGCGAG GGGCGAGAAGGAGAGGGTGGAGTACCTCAGCGAGTACTACCTGGGGGAGG ATGGGCTGAAGGCGAAGGTGGCCAGCAAGACAGCCACGATAGACCCGGTG GAGGCCAAGCGGGCCCGTCTCCCGGGGCTGGAGGTAATAAGACTGTATAC AGATGTTCTTTTGGTTCTGTGAGGTTCGCTGGGTTCTTTGAGTTCAAGAA CAGCTTTCTGAGCTTGGAAAACGTCGCTGATGGCAGCTGGCAGCTGATTC ACGCCAACACATGCTTTACTTTCATCTCGCGACACGCCTTGATGGCCATG CTCTCATGAGCCCACTCCGGAGGCGCGCCTTGCTAGGTACAAGAGATATG ATGGGTGAAGCACACTTCCTTGGGTTTGACGGCTCGTGTCACTCCGTGTG TGCTGGTTGTGGCAAATGGCATGGCATGGCATGGACGCAGCAACCCACAG AGGTCTCCTTTGTGAAAGAGTGTCCCCTTTGCGTTGCCCTTATATATTTT TGCACTCGTCATAAAGGGGACGTTGCCGTCCCGGTAGCATGAGTCCCACG AGCATTCCCACCCTATGCCGTTACAATAGCTGTGCGAGAGAAAGCGGGCG GTCTCCGCATGGGGAGCCAACGGAGGTCGCGAAACGACGACAAGGACACG ATGACAGCGAGGCAGCAGCGGCGGCATTCGCTATCAACGTACAACAAACA ATTGCCTCGTCGACAGCTCAGCGTGCTCGACAGGCTGGACTCGTGCTTTT TTTTTTGTTCTCCTCAAGTCCGTAGACGATTGGTTGACCCCCCCCGTGGT GGATGGAACAGCTGTTTTTTTGCTGCTTGACCGGGTGCTTCCAAGGACAA CGCCAAGGCACCTATCCTATGGCGCTACAAGGCTTGACCTTCTACAGCGG TGGGGACAAGAAGTAAACCTTGTAGTTCAGGGCCCTCAAGCTAGGTGCCT ACTAAAGGTGCAAATAAGGCTTGATGTCGGGCTGCAGCTTAACGGAGTAT GAAGCAGCTACACAAGGAACTAACGAAGAGTGCACTTGTTCCATCCGCCC TCACCTTTCGTGTTTCCTGTAAATCACTCATGTGCCGTATGTACATGTAT ATTTGTTTTCTTTCACGCGCCGCCGTCCGCGGGGACACCAGAGCCTGGAC GATCGCTGCTCCATCTTGGTGGGGCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6111:3..6829-

>mRNA_Ecto-sp13_S_contig6111.16793.1 ID=mRNA_Ecto-sp13_S_contig6111.16793.1|Name=mRNA_Ecto-sp13_S_contig6111.16793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1593bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6111:3..6829- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCACCCTGACCCCGGTCATCTGGAACTTCGTGGCTCCGGGGCTAAGCGC
TGGACGGGTGCAGAGCGTGGCGCTGGCGATGGTGGTCGAGCGCGAGCGCG
CTCGCCTCAAGTTCAAGTCCGCGGACTACTGGGACGTGGTCGCCAACGTT
ACCGCCGCGGGGGAGCCTGGTCGGTCGTTCGAGGCCCGTTTGGTGGAGGT
GGGATCCAAGACCGTCGTGACGGGCAAGGACTTCGATCCGGACACTGGGG
AGATCAAGGACAAGCTCGACGCCTCCAAGCTCGAACTTCTTGGTTCGGAG
AAAGCGTCGGCCGTGGCGGCGTCGCTGTCGTCCCTCGAGGTGCTCAAGGT
CGACAAGAGACGGGTCAGGCGGCAGCCTCCTGCCCCCTTCATCACGTCCA
CGCTGCAGCAGGAGTCGAGCCGAAAGCTCCGGCTGGGAGTGGATCAGACC
ATGAGGGCGGCGCAGGCCCTGTACGAGGCGGGGTACATCACCTACATGCG
CACGGACAGGCCCAGCCTGAGCAAGGAAGCCGCCGGGGTGGCTGAGGTTG
CGGTGAGAGACTCCTTCGGCGACGAGTACGTGCGGAAGGGGGACGCTAAG
GTTGTCAAGGTCAAGGGCAGCCAGGAGGCGCACGAGGCCATCCGCCCTGC
CCTTGTCGGCGCAACCCTCGCTGCGGCCGATACTCCCGACGGAAAGCAAG
CGGGAGAGGAGGAGGAGGAAGCGGGGTCAGGGGCTGGGTCAGCCTCGACT
AATGCGACCGAGGGGAGGTTCTTGCATCCTACGGAGCTCCCTGTAGAGGA
AGACGGCGGCGGCGGCGGCGGCCGCGGCCGCGGCTTGGAGGAGCAGCACA
GGGCGCTGTACGACCTGGTGTACCGGCGGACGCTGGCCAGCGCCATGGCG
GAGTCGGAGGCGGACTTCACGACGGTTTCGCTGGGAGCGGGAGGCGTTTC
TCTGGGGGACGGCGAGCAGGAGGTGGTGGACGTGGTGCTGAAGGCGTCGG
GCAAGACGACGGTTTTCGAGGGGTTCTTGAAGGCGTACAGGGAGGAGGGG
GCCGACGAATCTGTCCCCGGTGGCGCTGCGGCGGAAGGGGATGACCAAGA
GACTGAGCTTCCGTTGTTGGTGGAAGGCGGGAAAGTGGTGTGCGAGGCCG
CTAGACCAGCGCCACACCGCACGTCACCCCCTAGAAGGTTTTCGGAGGCC
AGCTTCATCAAGGAGCTCGAGGCGAAGGGGGTCGGGCGTCCCTCCACCTA
CGCGAGCATCATCGGTACCCTTCGGACAAGGACGTACGTAAACCTGCAGG
GACGAAGCCTGACGCCGAGCCTTACGGGCTTCGTGGTGGCGGACCTGCTC
CGGGAGCACTTCCCGGATTTCACCGACACCGGCTTCACGGCAAAGATGGA
GGACAAGCTGGACGCCATAGCGAGGGGCGAGAAGGAGAGGGTGGAGTACC
TCAGCGAGTACTACCTGGGGGAGGATGGGCTGAAGGCGAAGGTGGCCAGC
AAGACAGCCACGATAGACCCGGTGGAGGCCAAGCGGGCCCGTCTCCCGGG
GCTGGAGAGCCTGGACGATCGCTGCTCCATCTTGGTGGGGCCG
back to top