prot_Ecto-sp13_S_contig611.16791.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig611.16791.1
Unique Name	prot_Ecto-sp13_S_contig611.16791.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	224

Homology

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BLAST of mRNA_Ecto-sp13_S_contig611.16791.1 vs. uniprot
Match: A0A6H5KFQ0_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ0_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 1.310e-107
Identity = 173/210 (82.38%), Postives = 180/210 (85.71%), Query Frame = 0

Query:    2 LHVLLQSGSPDKFKSELQRLHVIYHEVEALHVKHTAGPEDPRRIRFGKKVNSGTQHKSIEEDLDAIDGEALQLFTAIAANSSIDNSKVIRQILQDLKLEGRRVSAGSKLLVAGGVFGAVFVVLAALALVHRDGEAPVDVLKAVELVLRDFGPDGLRVIDGTQLFVVGLFGTTVVPFGAVTTAQRNAVFSMIRGALPPTLPEQAAVPAAAL 211
            LHVLLQSGSPDKFKSELQRLH IYHE+EALHVKHTA PEDP  +RF KKVN GTQHKSIEEDLDAIDG+ALQL TAIAA SSI NSK IRQILQDLKLEGRRVS GS LLVAGGVFGAVFV +AALAL HRDGEAPVDV +AVELVLRDFGPDGLRV DGTQLFVVGL G  VV FGAVTTAQRNAVFSMIR A  P  PE A  P+  +
Sbjct:   40 LHVLLQSGSPDKFKSELQRLHDIYHEIEALHVKHTADPEDPTWVRFAKKVNRGTQHKSIEEDLDAIDGQALQLITAIAAKSSIGNSKAIRQILQDLKLEGRRVSGGSTLLVAGGVFGAVFVEIAALALAHRDGEAPVDVFEAVELVLRDFGPDGLRVSDGTQLFVVGLIGALVVAFGAVTTAQRNAVFSMIRAADGPINPETALAPSTVV 249

[Close]

BLAST of mRNA_Ecto-sp13_S_contig611.16791.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 2.470e-54
Identity = 114/220 (51.82%), Postives = 147/220 (66.82%), Query Frame = 0

Query:    1 MLHVLLQSGSPDKFKSELQRLHVIYHEVEALHVKHTAGPEDPRRIRFGKKVNSGTQHKSIEEDLDAIDGEALQLFTAIAANSSIDNSKVIRQILQDLKLEGRRVSAGSKLLVAGGVFGAVFVVLAALALVHRDGEAPVDVLKAVELVLRDFGPDGLRVIDGTQLFVVGLFGTTVVPFGAVTTAQRNAVFSMIRGALPPTLPEQAAVPAAALVLPHSYVER 220
            +L VLLQS   D  K+EL RL  +Y E++ALHVKHTA P DP+  +  KKVN GTQHKSIEEDLDAID EA QLF  IA  SSID  K I+QIL+   L+    + G+ + +AGGVF A+ V  AA+ L HR+  + +D+ + V LVL+D   +G+R+   + + +V +FG  +V   AV  AQR A  +MIR  LPPTLP++AAVP  AL LP SYVER
Sbjct:   39 VLQVLLQSDFAD-IKNELLRLRGLYEEIDALHVKHTADPADPKWAKAAKKVNRGTQHKSIEEDLDAIDKEARQLFGIIATKSSIDTRKTIKQILE---LQRGPNTVGTPVAIAGGVFAALLVAFAAVILSHRNEISHIDMGEVVGLVLQDLQLEGVRITFASHVSIVAVFGALLVVSSAVIWAQRKAFSTMIRDVLPPTLPQRAAVPTGALALPRSYVER 254

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig611.16791.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig611.16791.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KFQ0_9PHAE	1.310e-107	82.38	NB-ARC domain-containing protein n=1 Tax=Ectocarpu...	[more]
D8LPV9_ECTSI	2.470e-54	51.82	NB-ARC and TPR repeat-containig protein n=1 Tax=Ec...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 110..130
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 164..183
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..109
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 184..223
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 131..163
None	No IPR available	TMHMM	TMhelix		coord: 161..183
None	No IPR available	TMHMM	TMhelix		coord: 110..132

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig611	contig	Ecto-sp13_S_contig611:4473..5144 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig611.16791.1	mRNA_Ecto-sp13_S_contig611.16791.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig611 1249..15633 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig611.16791.1 ID=prot_Ecto-sp13_S_contig611.16791.1|Name=mRNA_Ecto-sp13_S_contig611.16791.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MLHVLLQSGSPDKFKSELQRLHVIYHEVEALHVKHTAGPEDPRRIRFGKK
VNSGTQHKSIEEDLDAIDGEALQLFTAIAANSSIDNSKVIRQILQDLKLE
GRRVSAGSKLLVAGGVFGAVFVVLAALALVHRDGEAPVDVLKAVELVLRD
FGPDGLRVIDGTQLFVVGLFGTTVVPFGAVTTAQRNAVFSMIRGALPPTL
PEQAAVPAAALVLPHSYVERRCV*