mRNA_Ecto-sp13_S_contig61097.16790.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61097.16790.1
Unique NamemRNA_Ecto-sp13_S_contig61097.16790.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.730e-13
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 TLQVVCPNYGRTGTKSMKAALEILGFGPCYH 93
            TLQVVCPNYGRTGTKS+KAALEILGFGPCYH
Sbjct:  183 TLQVVCPNYGRTGTKSLKAALEILGFGPCYH 213
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: A0A316G9W9_9RHOB (Uncharacterized protein n=1 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316G9W9_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 1.560e-7
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 TLQVVCPNYGRTGTKSMKAALEILGFGPCYHSECTLDN 114
            TLQV+   +GRTGTKS+KAALE LG+GPC+H    ++N
Sbjct:    2 TLQVIGSGFGRTGTKSLKAALERLGYGPCHHMHEIVEN 39
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: UPI001A39C276 (Uncharacterized protein n=1 Tax=Sinosporangium siamense TaxID=1367973 RepID=UPI001A39C276)

HSP 1 Score: 53.1 bits (126), Expect = 1.990e-7
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 TLQVVCPNYGRTGTKSMKAALEILGFGPCYHS 96
            TL+++   +GRTGT SMKAALE LGFGPCYH+
Sbjct:   10 TLEIIGAGFGRTGTLSMKAALERLGFGPCYHA 41
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: A0A3B0V6V4_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0V6V4_9ZZZZ)

HSP 1 Score: 53.1 bits (126), Expect = 2.010e-7
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    4 LQVVCPNYGRTGTKSMKAALEILGFGPCYHSE 99
            ++V+   +GRTGT S+KAALEILGFGPCYH E
Sbjct:    1 MKVIGSGFGRTGTLSLKAALEILGFGPCYHME 32
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: A0A371WDQ0_9HYPH (Uncharacterized protein n=1 Tax=Methylovirgula sp. 4M-Z18 TaxID=2293567 RepID=A0A371WDQ0_9HYPH)

HSP 1 Score: 52.8 bits (125), Expect = 4.130e-7
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    4 LQVVCPNYGRTGTKSMKAALEILGFGPCYHSECTLDN 114
            L+V+ P +GRTGT S+KAALEILG GPC+H +    N
Sbjct:    2 LEVIGPGFGRTGTMSLKAALEILGLGPCHHMDEVFKN 38
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: UPI001C8102CC (hypothetical protein n=1 Tax=Hyphomonas sp. WL0036 TaxID=2866160 RepID=UPI001C8102CC)

HSP 1 Score: 52.8 bits (125), Expect = 4.130e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 TLQVVCPNYGRTGTKSMKAALEILGFGPCYHSECTLDN 114
            TL V+   +GRTGT S+K ALE LGFGPC+H +  LDN
Sbjct:    2 TLSVISAGFGRTGTLSLKLALEELGFGPCHHMKEVLDN 39
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: A0A317FJX5_9PROT (Sulfotransferase family protein n=1 Tax=Falsiroseomonas bella TaxID=2184016 RepID=A0A317FJX5_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 4.310e-7
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    4 LQVVCPNYGRTGTKSMKAALEILGFGPCYHSE 99
            L+V+ P +GRTGT S+K ALE+LGFGPC+H E
Sbjct:    3 LEVIGPGFGRTGTASLKRALEMLGFGPCHHME 34
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: A4A8M6_9GAMM (Uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4A8M6_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 4.380e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 TLQVVCPNYGRTGTKSMKAALEILGFGPCYHS-EC 102
            +LQV+   +GRTGT S KAALE+LGFGPCYH  EC
Sbjct:    2 SLQVIGAGFGRTGTMSTKAALEMLGFGPCYHMVEC 36
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: UPI00174C34D0 (sulfotransferase family protein n=1 Tax=Kordiimonas sediminis TaxID=1735581 RepID=UPI00174C34D0)

HSP 1 Score: 52.8 bits (125), Expect = 4.620e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 TLQVVCPNYGRTGTKSMKAALEILGFGPCYHSECTLDN 114
            TL+++   +GRTGT SMK ALE LGFGPC+H E  L N
Sbjct:    2 TLKIIGAGFGRTGTMSMKLALEQLGFGPCHHMEEVLQN 39
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BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Match: UPI0017890E9E (sulfotransferase family protein n=2 Tax=Nonomuraea angiospora TaxID=46172 RepID=UPI0017890E9E)

HSP 1 Score: 52.8 bits (125), Expect = 5.690e-7
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    4 LQVVCPNYGRTGTKSMKAALEILGFGPCYH 93
            ++V+   +GRTGT+S+KAALEILGFGPCYH
Sbjct:   34 VKVIGAGFGRTGTRSLKAALEILGFGPCYH 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61097.16790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU57_ECTSI3.730e-1396.77UEV domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A316G9W9_9RHOB1.560e-760.53Uncharacterized protein n=1 Tax=Silicimonas algico... [more]
UPI001A39C2761.990e-768.75Uncharacterized protein n=1 Tax=Sinosporangium sia... [more]
A0A3B0V6V4_9ZZZZ2.010e-768.75Uncharacterized protein (Fragment) n=1 Tax=hydroth... [more]
A0A371WDQ0_9HYPH4.130e-759.46Uncharacterized protein n=1 Tax=Methylovirgula sp.... [more]
UPI001C8102CC4.130e-760.53hypothetical protein n=1 Tax=Hyphomonas sp. WL0036... [more]
A0A317FJX5_9PROT4.310e-765.63Sulfotransferase family protein n=1 Tax=Falsiroseo... [more]
A4A8M6_9GAMM4.380e-768.57Uncharacterized protein n=1 Tax=Congregibacter lit... [more]
UPI00174C34D04.620e-760.53sulfotransferase family protein n=1 Tax=Kordiimona... [more]
UPI0017890E9E5.690e-770.00sulfotransferase family protein n=2 Tax=Nonomuraea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61097contigEcto-sp13_S_contig61097:20..133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score70.9
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D8LU57
Preferred nameSTP22
Model size114
KEGG koko:K12183
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009898,GO:0009987,GO:0010008,GO:0010605,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016192,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042221,GO:0042493,GO:0042886,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046618,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090150,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1904669
Exons1
EggNOG free text desc.Tumor susceptibility
EggNOG OGsKOG2391@1,KOG2391@2759
Cds size114
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.9241204-CDS-Ecto-sp13_S_contig61097:19..1331681463851.9241204-CDS-Ecto-sp13_S_contig61097:19..133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61097 20..133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61097.16790.1prot_Ecto-sp13_S_contig61097.16790.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61097 20..133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61097.16790.1

>prot_Ecto-sp13_S_contig61097.16790.1 ID=prot_Ecto-sp13_S_contig61097.16790.1|Name=mRNA_Ecto-sp13_S_contig61097.16790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
TLQVVCPNYGRTGTKSMKAALEILGFGPCYHSECTLDN
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mRNA from alignment at Ecto-sp13_S_contig61097:20..133-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61097.16790.1 ID=mRNA_Ecto-sp13_S_contig61097.16790.1|Name=mRNA_Ecto-sp13_S_contig61097.16790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61097:20..133- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTGCAAGTGGTGTGCCCCAACTACGGAAGAACGGGGACCAAGTCAAT
GAAAGCAGCCCTAGAGATCCTAGGGTTTGGGCCGTGCTACCATAGTGAGT
GCACCCTTGATAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61097:20..133-

>mRNA_Ecto-sp13_S_contig61097.16790.1 ID=mRNA_Ecto-sp13_S_contig61097.16790.1|Name=mRNA_Ecto-sp13_S_contig61097.16790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61097:20..133- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTTGCAAGTGGTGTGCCCCAACTACGGAAGAACGGGGACCAAGTCAAT
GAAAGCAGCCCTAGAGATCCTAGGGTTTGGGCCGTGCTACCATAGTGAGT
GCACCCTTGATAAC
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