mRNA_Ecto-sp13_S_contig6109.16789.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 631 bits (1627), Expect = 1.700e-220 Identity = 345/433 (79.68%), Postives = 364/433 (84.06%), Query Frame = 1
Query: 1 MALSPSWAALAAKIAAGACVADAAIVDAGTLTGVTTEAAVFDDRATIPYGCPPAGFVGANTRDSITSDESRWS*APSLDSTDSGCTITY-------LQSFEMVLVF-ETRTRTIDISVDGSYALS*TSSRTTPDFESIDLGVDGKVVELVGDLQDLEWPSILEVEMLVDDGDDGSEVDVVEVGELGTVTA--DLDDGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELGSLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTS--ESVDMSGATGQAVTNIGAELSDSEWLSIVETEIMVYNGVAPPPSLTTPATPSPTLPPSTEKNICGTQFADWSTCPIVPIALMATDLNNCNFVDADDADIPACLETFGKANVQFVYIPFHDDLTTLPVGVFLGLDNILDMDISYTGLQ 1263
MALS SWAA AA +AAGACV DAAIVDAGTLTGVTTEA VFDDRAT+PYGCPPAG VGANTRD ITSDESRWS APSLDS+DSGCTITY L++ ++ L +TRTRTIDISVDG+YA S TSS TT DFESIDLGVDGKVVELVGDLQD EW SILEVE+LVDDGDDGSEVDVVE GELGTVTA DL D RLG+TVGC+PEGCTAALTRDGDM E WSC PELG LCSISYDLGAEYSIDE QLA QGDTRVRTV VAVDGDLVTTWTSSGTTS ESVDMSGATGQ VT GAELSDSEWLSIVETEIMVYNGVAPPPS TTPATPSPTLPP+T+ N+C +D C LNNCNFVDAD ADIPACLE FGKA++QFVY+PFHDDLTTLPVGVF GLDNILDMDISYTGLQ
Sbjct: 1 MALSRSWAAFAAAVAAGACVVDAAIVDAGTLTGVTTEAPVFDDRATLPYGCPPAGCVGANTRDGITSDESRWSCAPSLDSSDSGCTITYTLEDEQHLEALKIALYQGDTRTRTIDISVDGNYAFSWTSSGTTSDFESIDLGVDGKVVELVGDLQDWEWLSILEVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPELGGLCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVYNGVAPPPSPTTPATPSPTLPPTTDLNVCFDSTSDDYRCLPSEDDPNTVYLNNCNFVDADGADIPACLEIFGKADIQFVYMPFHDDLTTLPVGVFSGLDNILDMDISYTGLQ 433
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 435 bits (1119), Expect = 1.310e-143 Identity = 256/438 (58.45%), Postives = 309/438 (70.55%), Query Frame = 1
Query: 16 SWAALAAKIAAGACVADAAIVDAGTLTGVTTEAAVFDDRATIPYGCPPAGFVGANTRDSITSDESRWS*APSLDSTDSGCTIT-------YLQSFEMVLVF-ETRTRTIDISVDGSYALS*TSSRTTPDFESIDLGVDGKVVELVGDLQDLEWPSILEVEMLVDDG--DDGSEV--DVVEVGELGTVTA--DLDDGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELGSLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTSE--SVDMSGATGQAVTNIGAELSDSEWLSIVETEIMVYNGVAPPPSLTTPA------TPSPTLPPSTEKNICGTQFADWSTCPIVPIALMATDLNNCNFVDADDADIPACLETFGKANVQFVYIPFHDDLTTLPVGVFLGLDNILDMDISYTGLQ 1263
SWA LAA +A+ V +AGT+ VT EA+VFD R+T+PYGCPP G V ANTRD SDESRWS PSLD++ SGC+IT YL + L +TRTRTID+ VDG + + TSS TT FES+ L G+VVELVGDL D EW SILEVE+ VDDG DD + V DVVE E+GTVTA DL D RLG+TVGC+PEGCTAALTRDGDM EG WSC P+LG CSISYDLGAEY++++ +L +GD+R RTVDV+VDG LVTTWTSSGTT+E SVD+SGA GQ VT G+ +DS+WLSI+ETEIMVY G AP PS TTP TPSP + P+ N C D C DLNNCNFVD+D AD+PAC E+FGK +++ +++ FHDDLTTLP GVF GL+N++DMD+SYTGL+
Sbjct: 7 SWATLAAAVASSRTVYGN--YEAGTVMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDDEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSCAPKLGGPCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVYEGDAPAPSPTTPPPVVMPMTPSP-VSPTAGINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIETLHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLE 441
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 262 bits (669), Expect = 8.860e-73 Identity = 168/322 (52.17%), Postives = 206/322 (63.98%), Query Frame = 1
Query: 67 AAIVDAGTLTGVTTEAAVFDDRATIPYG-CPPAGFVGANTRDS-ITSDESRWS*APSLDSTDSGCTITYLQSFEMVLVF--------ETRTRTIDISVDGSYALS*TSSRTTPDFESIDLGVDGKVVELVGDLQDLEWPSILEVEMLVDDG----DDGSEVDVVEVGELGTVTAD--LDDGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELGSLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTS--ESVDMSGATGQAVTNIGAELSDSEWLSIVETEIMVYNG--VAPP-PSLTTPA 969
AA+V+A TL VT A ++D T G C P G +G NTRD TS ESRWS P+L S C ITY + L + RTRT++I++D TSS TT DFE+I++ G+ +++VG L+D EW SI+EVE+LVDDG DD + VE G LG VTA L D RLG++ GC+P GCTA LTRDGD+ +G WSC P LG CSISYDLGA Y + E +LA +G TRVRTVDV VDG L TTWTSSGTT E+VD+SG +GQ VT G L DSEW+SI ET+IMV + V+PP PS TTPA
Sbjct: 23 AAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDTMGRWIDIVGVLEDSEWLSIMEVEILVDDGVTDTDDVAGTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSCAPSLGGTCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGV-LDDSEWVSITETDIMVLSDSVVSPPSPSTTTPA 343
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 258 bits (658), Expect = 2.950e-71 Identity = 167/329 (50.76%), Postives = 208/329 (63.22%), Query Frame = 1
Query: 61 ADAAIVDAGTLTGVTTEAAVFDDRATIPYGCPPAGFVGANTRDS-ITSDESRWS*APSLDSTDSGCTITYLQSFEMVLVF--------ETRTRTIDISVDGSYALS*TSSRTTPDFESIDLGVDGKVVELVGDLQDLEWPSILEVEMLVDDG----DDGSEVDVVEVGELGTVTAD--LDDGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELGSLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTS--ESVDMSGATGQAVTNIGAELSDSEWLSIVETEIMVYN-GVAPPPSLTTPATPSPTLPP 993
ADAAIV+A TL VT A ++D R + GC P+G V TRD TS ESRWS P+L S C ITY + L + RTRT++I++D TSS TT FE+I++ G+ +E+VG L+D EW SI+EVE+LVDDG DD + VE G LG VTA L D RLG++ GC+P GCTA LTRDGD+ + WSC P LG CSISYDLGA Y + + +LA G TRVRTVDV+VDG L TTWTSSGTT E++D+SG +GQ +T G L + EWLSI ETEIMV + GV PPS ++P TP+P P
Sbjct: 20 ADAAIVEASTLATVTAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPALGDAGSVCRITYGLGIQYQLTGLNIAMFKGDERTRTLEINIDNLPYTVWTSSGTTAGFETIEVDTTGRWIEIVGVLEDSEWLSIMEVEILVDDGVTDTDDVVDTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDESRWSCAPSLGGTCSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGV-LDNLEWLSIKETEIMVLSDGVVFPPSASSP-TPAPVFAP 346
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 226 bits (575), Expect = 4.230e-60 Identity = 146/322 (45.34%), Postives = 186/322 (57.76%), Query Frame = 1
Query: 61 ADAAIVDAGTLTGVTTEAAVFDDRATIPYGCPPAGFVGANTRDS-ITSDESRWS*APSLDSTDSGCTITYLQSFEMVLVF--------ETRTRTIDISVDGSYALS*TSSRTTPDFESIDLGVDGKVVELVGDLQDLEWPSILEVEMLVDDGDDGSE-----------------VDVVEVGELGTVTADLD--DGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELGSLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTS--ESVDMSGATGQAVTNIGAELSDSEWLSIVETEIMVYNG 936
ADAAIV+A TL VT A ++D + GC P+G V TRD +TS ESRWS P+L S C ITY + L + RTRT+DIS+D + TSS TT +E+I+L + + +VG L+D EW SI+EVE++++DG+ GS+ VEVG LG VT + D L GC+P GC A TRDGD+ WSC P LG C+ISYDLG Y +DE +LA +G R T++V VD LVTTWTSSGTT E++D+SG +GQ V G L DSEWLSIVE EIMV +G
Sbjct: 21 ADAAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDTMAQWISVVGVLEDSEWLSIMEVEIMIEDGESGSDDGDTTATDAGDDDTTTSTSAVEVGSLGAVTVEASFYDPSLTVDGGCDPSGCVADNTRDGDLSTASRWSCAPTLGGECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEITGV-LDDSEWLSIVEVEIMVEDG 341
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 223 bits (569), Expect = 1.090e-59 Identity = 147/319 (46.08%), Postives = 189/319 (59.25%), Query Frame = 1
Query: 61 ADAAIVDAGTLTGVTTEAAVFDDRATIPYGCPPAGFVGANTRDS-ITSDESRWS*APSLDSTDSGCTITY-------LQSFEMVLVF-ETRTRTIDISVDGSYALS*TSSRTTPDFESIDLGVDGKVVELVGDLQDLEWPSILEVEMLVDDGDDGSEVDV-------VEVGELGTVTADLD--DGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELGSLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTS--ESVDMSGATGQAVTNIGAELSDSEWLSIVETEIMVY-NGVAPPPS 954
ADAA V+A TL VT A ++D R + GC P+G V TRD TS ESRW+ P+L S C ITY L S + + + RTRT++IS+D + TSS TT FE+I+L G+ + +VG L D EW SI+EV++++DDG+ GS+ D VE LG+VTA D RL GC+P GC TRDGD+ WSC P LG C+ISYDLG Y +DE +LA +G R ++ V VD LVTTWTSSGTT E++D+SG GQ V I L DSEWLSI+E EIMV +G +P P+
Sbjct: 3 ADAASVEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMGRWISIVGVLADSEWLSIMEVKIMIDDGETGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDGGCDPSGCVVDNTRDGDLSTASRWSCAPTLGGECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQ-VLEITGVLDDSEWLSIIEAEIMVLEDGASPMPT 320
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: D7G5L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L7_ECTSI) HSP 1 Score: 143 bits (361), Expect = 6.180e-37 Identity = 73/94 (77.66%), Postives = 78/94 (82.98%), Query Frame = 1
Query: 454 SILEVEMLVDDGDDGSEVDVVEVGELGTVTA--DLDDGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELGSLCSISYDLGAEYSIDEFQL 729
S+ VE+LVDDGDDGSEVDVVE GELGTVTA DL D RLG+TVGC+P+GCTAALTRDGDM E WSC PELG LCSISYD GAEY IDE QL
Sbjct: 22 SVSMVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPDGCTAALTRDGDMSEDSRWSCAPELGGLCSISYDRGAEYRIDELQL 115
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 146 bits (368), Expect = 2.840e-33 Identity = 86/153 (56.21%), Postives = 100/153 (65.36%), Query Frame = 1
Query: 535 TVTADLDDGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPELG---SLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTS--ESVDMSGATGQAVTNIGAELSDSEWLSIVETEIMVY--NGVAPPPSLTTPAT 972
T TADL D L GC+P GCTAALTRDGD + WSC LG ++CSISYDLG E+ +DE ++A GD RVRT+DV+VDG LV TWTSSGTT ES+ V N+ L DSEWLSI+ETEIMV+ N V PPP TPAT
Sbjct: 252 TTTADLFDPALAIDNGCDPAGCTAALTRDGDTGDASRWSCATNLGGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIETEIMVWPQNVVTPPP---TPAT 401
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: D8LRJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ1_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.500e-14 Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 1
Query: 355 TSSRTTPDFESIDLGVDGKVVELVGDLQDLEWPSILEVEMLVDDGDDGSEVDVVEVGELGTV--TADLDDGRLGNTVGCNPEGCTAALTR 618
TSS T FE+I+LGV G V+ L G L D +W SILEV +LVDDG+D V VVE GELG V +A+ D RL +TVGC+P GC+AALTR
Sbjct: 6 TSSGETAAFETIELGVQGTVIGLHGVLADSDWLSILEVGILVDDGNDDG-VAVVEAGELGPVASSAEFYDLRLADTVGCDPAGCSAALTR 94
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 2.730e-13 Identity = 59/154 (38.31%), Postives = 85/154 (55.19%), Query Frame = 1
Query: 514 VEVGELGTVTADLD--DGRLGNTVGCNPEGCTAALTRDGDMFEGPIWSCTPEL--------GSLCSISYDLGAEYSIDEFQLAQDQGDTRVRTVDVAVDGDLVTTWTSSGTTS--ESVDMSGATGQ-AVTNIGAE---LSDSEWLSIVETEIMV 927
VE GE+ TVT + D R + GC P+GCT TRDGD+ + WSC+ L G C + ++LG + +A +GDTR RT+++ V+G+L TS GTTS E+ ++ G G V ++G E L+ E+LSI+E EI V
Sbjct: 248 VEAGEVTTVTVTTNAFDARTDDD-GCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAV 400 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6109.16789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6109.16789.1 >prot_Ecto-sp13_S_contig6109.16789.1 ID=prot_Ecto-sp13_S_contig6109.16789.1|Name=mRNA_Ecto-sp13_S_contig6109.16789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=299bp MLVDDGDDGSEVDVVEVGELGTVTADLDDGRLGNTVGCNPEGCTAALTRDback to top mRNA from alignment at Ecto-sp13_S_contig6109:22..7438+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6109.16789.1 ID=mRNA_Ecto-sp13_S_contig6109.16789.1|Name=mRNA_Ecto-sp13_S_contig6109.16789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6109:22..7438+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6109:22..7438+ >mRNA_Ecto-sp13_S_contig6109.16789.1 ID=mRNA_Ecto-sp13_S_contig6109.16789.1|Name=mRNA_Ecto-sp13_S_contig6109.16789.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6109:22..7438+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |