mRNA_Ecto-sp13_S_contig6106.16785.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6106.16785.1
Unique NamemRNA_Ecto-sp13_S_contig6106.16785.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6106.16785.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.280e-28
Identity = 68/123 (55.28%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:  253 PAARARSRLICKC*LIC------RLIRASPGR-PQAAIPLPTHRFQHQPIEGHIRKDRAD---CSNFSAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAYTIPGCQALP*LQTRRPDYIYW 591
            PAAR RSRLIC+C LIC      RL RA   R PQ   P             ++ KDRAD   C  FS GTC WTGLLIKYPG VCWLCASEFEVGEVVWAYTIP  +       R   YI W
Sbjct:   73 PAARERSRLICECWLICCCHRRRRLARAKADREPQYLCP-------GTGCNTNLHKDRADYPACRTFSVGTCVWTGLLIKYPGNVCWLCASEFEVGEVVWAYTIPDVE-------RPACYITW 181
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BLAST of mRNA_Ecto-sp13_S_contig6106.16785.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.350e-23
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:  379 IEGHIRKDRAD---CSNFSAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAYTIPGCQ 546
            ++ +IRKDRAD   C NF+AGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWA+TIP  +
Sbjct:   77 LKENIRKDRADYPACRNFNAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAHTIPDVE 135
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BLAST of mRNA_Ecto-sp13_S_contig6106.16785.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.950e-21
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 2 
Query:  539 VVKRCLDCKRADPTIYTGHKLIAKSTQPFHVGQPLPPAPSHDTCDVLHGGEHYRTLQFNP 718
            V KRC DCKRAD TI    +LIAKSTQP HV QPLP  PS+DTCDVL+GGEHYRTL+FNP
Sbjct:  171 VAKRCSDCKRADSTILDTDQLIAKSTQPCHVDQPLPSPPSNDTCDVLYGGEHYRTLKFNP 230
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BLAST of mRNA_Ecto-sp13_S_contig6106.16785.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.230e-7
Identity = 40/68 (58.82%), Postives = 43/68 (63.24%), Query Frame = 3 
Query:   51 MALLPSTLSTPPLSSQITAHTPRAAFTQ*TPYIHASPKPSSLQPRYQCIVLHRWILSAGYFCGCFDSA 254
            MALLPST STPPLSSQIT HT RAA     P +  + K      RYQ IVLHR ILSAG    CF +A
Sbjct:    1 MALLPSTPSTPPLSSQITTHTARAASNTVHPCLAKAAK------RYQHIVLHRRILSAG----CFSAA 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6106.16785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKW7_ECTSI1.280e-2855.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU2_9PHAE7.350e-2377.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET1_ECTSI1.950e-2175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI1.230e-758.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6106contigEcto-sp13_S_contig6106:742..2020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size727
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.528073-UTR-Ecto-sp13_S_contig6106:741..9301681463851.528073-UTR-Ecto-sp13_S_contig6106:741..930Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6106 742..930 -
1681463851.5374885-UTR-Ecto-sp13_S_contig6106:1482..15631681463851.5374885-UTR-Ecto-sp13_S_contig6106:1482..1563Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6106 1483..1563 -
1681463851.555359-UTR-Ecto-sp13_S_contig6106:1830..20201681463851.555359-UTR-Ecto-sp13_S_contig6106:1830..2020Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6106 1831..2020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.546531-CDS-Ecto-sp13_S_contig6106:1563..18301681463851.546531-CDS-Ecto-sp13_S_contig6106:1563..1830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6106 1564..1830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6106.16785.1prot_Ecto-sp13_S_contig6106.16785.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6106 1564..1830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6106.16785.1

>prot_Ecto-sp13_S_contig6106.16785.1 ID=prot_Ecto-sp13_S_contig6106.16785.1|Name=mRNA_Ecto-sp13_S_contig6106.16785.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MHRPPPLDPLCRLLLRLLRLRPPPARGAGSSASASSSAGSSEQVPADRKL
RYLCPRTGSNINLLKDISAKTGPTAVTLAPAPARGPAF*
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mRNA from alignment at Ecto-sp13_S_contig6106:742..2020-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6106.16785.1 ID=mRNA_Ecto-sp13_S_contig6106.16785.1|Name=mRNA_Ecto-sp13_S_contig6106.16785.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6106:742..2020- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGAGAGGGATGCGTGCAAATATTCGGCTGCCCGCACTCGCTCTGACG
ATGGCTCTCCTCCCATCTACTCTTTCTACACCTCCCCTCTCATCACAAAT
CACAGCTCACACCCCCAGAGCAGCTTTCACCCAATAAACACCGTACATCC
ATGCCTCGCCAAAGCCGTCAAGCCTCCAGCCCCGCTACCAATGCATCGTC
CTCCACCGTTGGATCCTCTCTGCCGGCTACTTCTGCGGCTGCTTCGACTC
CGCCCGCCGCCCGCGCGCGGAGCCGGCTCATCTGCAAGTGCTAGCTCATC
TGCCGGCTCATCCGAGCAAGTCCCGGCCGACCGCAAGCTGCGATACCTCT
GCCCACGCACCGGTTCCAACATCAACCTATTGAAGGACATATCCGCAAAG
ACAGGGCCGACTGCAGTAACTTTAGCGCCGGCACCTGCGCGTGGACCGGC
CTTTTGATCAAGTACCCCGGAAAGGTCTGCTGGCTCTGCGCCTCCGAGTT
TGAGGTCGGCGAAGTGGTGTGGGCATACACCATCCCAGGTAAGAAATTTC
GTATATCTTCAGTCTAGCAGTAGTATAATGAATGATCTTCCTCTACGATA
TAATCTGCAGCAGCAGGCTTGGAGTTAGCGCGTTGATGTTCGTGGTTGTT
TGGATGAACACGATTCATATTTTATTTCATCCTACTGTACATGTCCACAC
GTTTTTTGAGGTGTTCGACACCATTATTTTCAGCGTGAATATGCGCACAT
ACATGTTCGTTATGTATGTTCCTGTCTTTCCTGCTGCGCAAACGCTAAAG
CTGACGCAGGGACCCACTTCTATTTTCTTTTCTTTTCGTGTTTCACGCCA
TTATTTTCGGTGTTCCTGCCCGTGAATATGCATGCGTATATGTTCTTCGG
TATGGTGTTTGATCTTTCTGCTGCCAACGCCATTATTCTCACGCAGGACA
GTTGTTTTTTCACACCATCATTTGCAAATTTCCTCTGTGTTTTGTTCTTA
ACACTATATATATTTGCTGCGCAACGACATAATGCTGACGCAGGACGCAT
CTTTTTTCCCTTCCACATTGTTCTCGTGCAATTTCTACAGGTTGTCAAGC
GCTGCCTTGACTGCAAACGCGCCGACCCGACTATATATACTGGACACAAG
TTAATCGCCAAGTCCACCCAGCCCTTCCACGTCGGCCAGCCCCTTCCACC
TGCTCCGTCCCATGATACATGCGATGTTTTGCATGGAGGCGAGCACTACC
GAACTTTGCAATTTAATCCATGACTTCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6106:742..2020-

>mRNA_Ecto-sp13_S_contig6106.16785.1 ID=mRNA_Ecto-sp13_S_contig6106.16785.1|Name=mRNA_Ecto-sp13_S_contig6106.16785.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6106:742..2020- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGTCCTCCACCGTTGGATCCTCTCTGCCGGCTACTTCTGCGGCT
GCTTCGACTCCGCCCGCCGCCCGCGCGCGGAGCCGGCTCATCTGCAAGTG
CTAGCTCATCTGCCGGCTCATCCGAGCAAGTCCCGGCCGACCGCAAGCTG
CGATACCTCTGCCCACGCACCGGTTCCAACATCAACCTATTGAAGGACAT
ATCCGCAAAGACAGGGCCGACTGCAGTAACTTTAGCGCCGGCACCTGCGC
GTGGACCGGCCTTTTGA
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