mRNA_Ecto-sp13_S_contig6105.16784.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6105.16784.1
Unique NamemRNA_Ecto-sp13_S_contig6105.16784.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6105.16784.1 vs. uniprot
Match: A0A6H5JMQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ8_9PHAE)

HSP 1 Score: 506 bits (1303), Expect = 1.560e-172
Identity = 333/389 (85.60%), Postives = 342/389 (87.92%), Query Frame = 1 
Query:   94 MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHATLQQAGVYSGSYAVPGVFGGQTLTFQYGGGSAPRPPSVSAPTAAPSQPPQAAGSINSTANHMVLDNDPSLHHHSASTSVAWSGATIASPAVLFGQQESVAATSALQFAQLGQELLPQQQLHGCGGIGSSASPAALVPPPQLAGIHPTASLTTTTSVDTAVSTHVVDGGVAGRGAMTSVLQQPTPPPLSDIGGAVVPLPLANSGPTFTFNGXXXXXXGIDPLTRPVFQRGFNPTALQNQQQLAPVFTTPSSTVFPLSAFVGEQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGTPAASITAAFAPFPPQSFLQLNPGR 1260
            MS SSGGGSSDHRGTPSKGGRSDTNGTVSH T QQAGVYSGSYAVPGVFGGQT+T Q+GGGSAPRPPSVSAP AAPSQPPQAAGSI STANHMVLDNDPSL H  A TSVAW GATIASPAVLFGQQES+AATS LQFAQLGQ+LLPQQQLHG  GIGSS +PAALVPP QLAGIHPTASLT+TTSVDTAVSTHVVD GVAG GA+TSVLQQ  PPPLSDIGGAVVPLP+ANSGPT+TFNG  XXXX  DPLTRPVFQ GFNPTALQNQQQ APVFTTPSST FPLSAFVGEQQ XXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQ XXXXXXXXXXXXX                 PGTPAASITAAFAPFPPQSFLQLNP R
Sbjct:    1 MSSSSGGGSSDHRGTPSKGGRSDTNGTVSHVTSQQAGVYSGSYAVPGVFGGQTVTSQHGGGSAPRPPSVSAPPAAPSQPPQAAGSIKSTANHMVLDNDPSLDHPPAVTSVAWGGATIASPAVLFGQQESIAATSTLQFAQLGQQLLPQQQLHGFRGIGSSVAPAALVPPAQLAGIHPTASLTSTTSVDTAVSTHVVDCGVAGGGAVTSVLQQHPPPPLSDIGGAVVPLPVANSGPTYTFNGGGXXXXVSDPLTRPVFQPGFNPTALQNQQQPAPVFTTPSSTGFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQQXXXXXXXXXXXXX-----------------PGTPAASITAAFAPFPPQSFLQLNPVR 372
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BLAST of mRNA_Ecto-sp13_S_contig6105.16784.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.860e-19
Identity = 79/189 (41.80%), Postives = 81/189 (42.86%), Query Frame = 1 
Query:   94 MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHATLQQAGVYSGSYAVPGVFGGQTLTFQYGGGSAPRPPSVSAPTAAPSQPPQAAGSINSTANHMVLDNDPSLHHHSASTSVAWSGATIASPAVLFGQQESVAATSALQFAQLGQELLPQQQLHGCGGIGSSASPAALVPPPQLAGIHPTASLTTTTSVDT 660
            MSGSSGGGSSDHRGTPSKGGRSDT GT                                                                                                     SV ATSALQFAQLGQ+LLP QQLHG GGIGSS +PAALVPP QLAGIHPTASLTT TSVDT
Sbjct:    1 MSGSSGGGSSDHRGTPSKGGRSDTYGT-----------------------------------------------------------------------------------------------------SVPATSALQFAQLGQQLLPHQQLHGFGGIGSSVAPAALVPPAQLAGIHPTASLTTATSVDT 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6105.16784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMQ8_9PHAE1.560e-17285.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2K6_ECTSI1.860e-1941.80P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6105contigEcto-sp13_S_contig6105:5056..8532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.1
Seed ortholog evalue6.5e-19
Seed eggNOG ortholog2880.D7G2K6
Model size1884
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-11_002580.1
EC1.14.11.2
Cds size1221
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6105.16784.1prot_Ecto-sp13_S_contig6105.16784.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6105 5149..7949 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.4440033-UTR-Ecto-sp13_S_contig6105:5055..51481681463851.4440033-UTR-Ecto-sp13_S_contig6105:5055..5148Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6105 5056..5148 +
1681463851.4876904-UTR-Ecto-sp13_S_contig6105:7949..82941681463851.4876904-UTR-Ecto-sp13_S_contig6105:7949..8294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6105 7950..8294 +
1681463851.5028098-UTR-Ecto-sp13_S_contig6105:8307..85321681463851.5028098-UTR-Ecto-sp13_S_contig6105:8307..8532Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6105 8308..8532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.456746-CDS-Ecto-sp13_S_contig6105:5148..55321681463851.456746-CDS-Ecto-sp13_S_contig6105:5148..5532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6105 5149..5532 +
1681463851.466932-CDS-Ecto-sp13_S_contig6105:6838..76151681463851.466932-CDS-Ecto-sp13_S_contig6105:6838..7615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6105 6839..7615 +
1681463851.4771006-CDS-Ecto-sp13_S_contig6105:7889..79491681463851.4771006-CDS-Ecto-sp13_S_contig6105:7889..7949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6105 7890..7949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6105.16784.1

>prot_Ecto-sp13_S_contig6105.16784.1 ID=prot_Ecto-sp13_S_contig6105.16784.1|Name=mRNA_Ecto-sp13_S_contig6105.16784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHATLQQAGVYSGSYAVPGVFG
GQTLTFQYGGGSAPRPPSVSAPTAAPSQPPQAAGSINSTANHMVLDNDPS
LHHHSASTSVAWSGATIASPAVLFGQQESVAATSALQFAQLGQELLPQQQ
LHGCGGIGSSASPAALVPPPQLAGIHPTASLTTTTSVDTAVSTHVVDGGV
AGRGAMTSVLQQPTPPPLSDIGGAVVPLPLANSGPTFTFNGGGGGGGGID
PLTRPVFQRGFNPTALQNQQQLAPVFTTPSSTVFPLSAFVGEQQQQQKAA
PVFTIPPSTGLAPSAFGGEQQQPMVMPVIQQQQQQQQQQQQQQQHEQQQQ
QQQQHEQQQQQQPGTPAASITAAFAPFPPQSFLQLNPGRACTTGVGSEFD
ISTTSG*
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mRNA from alignment at Ecto-sp13_S_contig6105:5056..8532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6105.16784.1 ID=mRNA_Ecto-sp13_S_contig6105.16784.1|Name=mRNA_Ecto-sp13_S_contig6105.16784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6105:5056..8532+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCCGTCTTTATGCGGTGCTGTGTGGCTGCTAGACGAGGACACAGCAA
CACACTTGTTGAACCCCACGGGCTACTGGGCTAGGCGTCAACAATGAGCG
GTTCCAGCGGGGGCGGGAGCAGCGACCATCGTGGCACCCCCAGCAAGGGC
GGGCGAAGCGACACTAACGGCACAGTGAGTCACGCCACCTTGCAGCAGGC
GGGCGTCTACAGCGGCAGCTACGCTGTGCCTGGAGTGTTTGGCGGGCAAA
CTTTAACTTTCCAATATGGAGGAGGGTCAGCTCCTCGCCCGCCTTCAGTT
TCGGCACCAACAGCAGCACCGTCACAACCACCGCAAGCAGCAGGCAGCAT
CAACAGCACCGCGAACCACATGGTGCTGGATAACGACCCATCTCTTCACC
ATCATTCTGCCAGCACCTCAGTGGCGTGGAGTGGCGCTACCATCGCTTCC
CCGGCCGTGTTGTTTGGGCAGCAGGAGGTGCGCGTGCATGTCTTTTTTTG
CAAGTTTTGATGTGTGCATATGGCAACATCAGTCCACCCCTGGAGGAAGC
AGTGTCCCTCTAATCCATTTTTAAGTACAAGTAGTGCACATGATAAACCT
CACAGACGAATCCGTTGAAGGGACTGTTGTCCTGGCTGGTTGATTCACTG
TGTATTTTCTTAAGGTAAAGGGCGTCGCAGACGTGCAGACCTCAGCAAAC
CGATCTTGGTGTGGGCGGGTGATTTTTTATGACGAACCGATTGAGCGCGA
CCGAAAGAGAGATTTAACAGCGCAGGGAAATATCCGCTGGTAGTGGCTTA
GAGAAGCTCCTGGGGCTTGTCTCCCCAACACTCCATGCAGTCTACCTGCT
CCTCACACTTTCTTTTAACCCAAGAAAATTTCCCCAAACGTACATCTCCA
TTCAAGTCTAAACCGCCGAAACGGCTTTAACCCAAGAAAATTTCCCCAAA
CGTACATCTCCATCCAAGTCTAAACCGCCGAAACGGCGGGTGCCTATATA
TATATGTGTGGTACACGATGTTCCAGGGACAGGCCTTGCCGTCACCTGCC
CAATCTCCCGAATAGCGGGTAACAGGCTCGTACTTCTCGTACTAGGTACC
TTAGAAGACCTGGTTTGGCGTTTCGTGGCGGCGAATACCATACGCAGTGA
TTGGTTTGAATGCAGATTTGAGGAGTTGAACCCAGCTGTGGCCTTCCTTT
GCAGGACTACAGCATTAGCTCTTAAAAGCGAACAACGCACAAGCCGCTGC
CACACTTCCCTCTGGTGACGGAGCGATTAAGAGATTGTTTTCCTGGGTTG
GACCTCCATCATGTTAGAATTTGACCAGAACCGATCGACAGCCACATGAT
GGCCGGCCGCGTTTGACCCTCTACAGAACGCGTCCGCGCTTACAAGCAGA
AACTAGTTTCGGCAGAGGCTGGGGTTCTGGGTTCCTGGGTCATGCTAGGA
ATGGTCGCTATCTTAACCGAGCTCACAAATGGTGCTCAAGTTCTCAACCT
TTGATTTTTTTCGAGGCTCAATTTCTCAACTCCTGGGTTCTTACGTGCGG
GCGCGTTCTGTGGTTCGGTCCACATGGTACGAAATGGTCATATGTTCTGG
TACATTACACCCCGTTAGTGTGCATGGAAGAGGGTGTGGTTTGAAGCCCA
CATAGTGGTGTGTATCCGTGCAGCCTTTGGTTGGCCCACTACATCGACAG
ACCGGTCTCCTCGTTCGGTCTTCGAATCCATCGTGCCCGCCTCTTCGTGT
GTTCATGTACGTCCACGCCTGCTTGGGGGCCAGAGCGTTGCGGCCACAAG
CGCCTTGCAGTTCGCACAGCTAGGACAAGAGCTGCTCCCGCAGCAGCAGC
TTCACGGATGCGGAGGGATCGGATCGTCCGCTTCCCCAGCCGCTCTGGTT
CCACCGCCCCAACTGGCTGGCATCCACCCTACCGCTTCGCTCACAACAAC
GACCTCCGTCGACACTGCGGTCAGTACGCATGTAGTCGATGGTGGTGTTG
CTGGCAGGGGGGCGATGACATCAGTGCTGCAACAGCCAACCCCCCCACCC
CTCAGCGATATTGGTGGCGCTGTAGTGCCCCTCCCCTTGGCAAACAGCGG
TCCCACATTCACCTTTAACGGCGGTGGCGGCGGAGGCGGCGGTATTGACC
CGCTGACGAGGCCTGTCTTTCAGCGTGGATTCAACCCAACCGCACTGCAG
AACCAACAGCAGCTGGCACCGGTGTTCACGACCCCGTCGTCCACGGTTTT
CCCACTCTCTGCCTTCGTTGGCGAGCAGCAACAGCAGCAGAAGGCGGCAC
CGGTGTTCACGATCCCGCCATCCACTGGATTAGCCCCCTCTGCCTTTGGT
GGCGAGCAACAACAGCCAATGGTGATGCCAGTGATTCAGCAGCAACAGCA
GCAACAGCAGCAGCAGCAACAGCAACAGCAGCATGAACAGCAGCAGCAGC
AGCAGCAGCAGCATGAACAGCAGCAGCAACAACAACCAGGAACGCCTGCT
GCGAGCATCACTGCAGCGTTCGCGCCATTTCCCCCGCAGTCTTTCTTGCA
GCTTAATCCGGTGAGAAGACAGATGAATCGCGTTGTCCAATCAGTAGCGG
CGTTTGCATGCAATACAAGGGTTATGAGAACCCCCCCAAACTCCTCGATA
TCCTCCAACCATGCACTCTGAACCAAGCCAACGTTCCAGTAGCCGCCATT
GTACCCAATGTTGTCCTTTTGAGGCCATTTTCTGGCCAGGCAGCTGTCGC
TCACTTGTTTTCGTTTGCCTTACCACGCTTGGCGTGTTTTTCATCTGCTT
CTGTGTGCACCTCTTTTGAAACCTTTCGACAAAGGGCAGAGCTTGTACCA
CGGGGGTGGGATCGGAATTTGATATTTCGACTACGAGCGGCTAGCCTGGC
CCCCGGGCCGAGGAGACTGACTGATTGTTGGAGGCGCCGCCCCCCGCGGC
GTGTTTTTGACGGAATTTGCGCGCGCGGCTCGCAGGTCCAAGTGCGACAT
TCTTGCGACCCCCTGGTTGCTCATATGTCCCCTACTTCACCCGTATGATA
CAGTGCGTTTGTCAATTCTTTCAACTCGCATCTCGTGACAAAAGCACATG
CACGTCCATGCGAGCGTGTAGTTTGTATTGACACACGTACTCTGCCGATG
GCGCCGATTGTACACGTGTAACACGTTTATTGATAGCGTTCATGATGTTG
TACCACCTTCATGGACTCGCACAGTCTCCCGATGCCACCGTGTGCATTAC
AGTTGCTCGCCTGCGGGCGGTGTGTTGGGCATAACGGGGGCTGTTGTCTA
ATGATTAGCTGCCAAGCAGGTTTTTCTGGTACACGTTTTTCGTTCTTCGA
TGCGCTCTTTCGACCAATACGCACGGTGTTCGCGCCATTTCACGTCAAAC
CCGACCACTGTGCCTACTCGTGGCCCGGGCGTGTGCGTGTGTGCGCTTGT
ATGCGTGTGTGCGGCGTGGCGGTGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6105:5056..8532+

>mRNA_Ecto-sp13_S_contig6105.16784.1 ID=mRNA_Ecto-sp13_S_contig6105.16784.1|Name=mRNA_Ecto-sp13_S_contig6105.16784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6105:5056..8532+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGTTCCAGCGGGGGCGGGAGCAGCGACCATCGTGGCACCCCCAG
CAAGGGCGGGCGAAGCGACACTAACGGCACAGTGAGTCACGCCACCTTGC
AGCAGGCGGGCGTCTACAGCGGCAGCTACGCTGTGCCTGGAGTGTTTGGC
GGGCAAACTTTAACTTTCCAATATGGAGGAGGGTCAGCTCCTCGCCCGCC
TTCAGTTTCGGCACCAACAGCAGCACCGTCACAACCACCGCAAGCAGCAG
GCAGCATCAACAGCACCGCGAACCACATGGTGCTGGATAACGACCCATCT
CTTCACCATCATTCTGCCAGCACCTCAGTGGCGTGGAGTGGCGCTACCAT
CGCTTCCCCGGCCGTGTTGTTTGGGCAGCAGGAGAGCGTTGCGGCCACAA
GCGCCTTGCAGTTCGCACAGCTAGGACAAGAGCTGCTCCCGCAGCAGCAG
CTTCACGGATGCGGAGGGATCGGATCGTCCGCTTCCCCAGCCGCTCTGGT
TCCACCGCCCCAACTGGCTGGCATCCACCCTACCGCTTCGCTCACAACAA
CGACCTCCGTCGACACTGCGGTCAGTACGCATGTAGTCGATGGTGGTGTT
GCTGGCAGGGGGGCGATGACATCAGTGCTGCAACAGCCAACCCCCCCACC
CCTCAGCGATATTGGTGGCGCTGTAGTGCCCCTCCCCTTGGCAAACAGCG
GTCCCACATTCACCTTTAACGGCGGTGGCGGCGGAGGCGGCGGTATTGAC
CCGCTGACGAGGCCTGTCTTTCAGCGTGGATTCAACCCAACCGCACTGCA
GAACCAACAGCAGCTGGCACCGGTGTTCACGACCCCGTCGTCCACGGTTT
TCCCACTCTCTGCCTTCGTTGGCGAGCAGCAACAGCAGCAGAAGGCGGCA
CCGGTGTTCACGATCCCGCCATCCACTGGATTAGCCCCCTCTGCCTTTGG
TGGCGAGCAACAACAGCCAATGGTGATGCCAGTGATTCAGCAGCAACAGC
AGCAACAGCAGCAGCAGCAACAGCAACAGCAGCATGAACAGCAGCAGCAG
CAGCAGCAGCAGCATGAACAGCAGCAGCAACAACAACCAGGAACGCCTGC
TGCGAGCATCACTGCAGCGTTCGCGCCATTTCCCCCGCAGTCTTTCTTGC
AGCTTAATCCGGGCAGAGCTTGTACCACGGGGGTGGGATCGGAATTTGAT
ATTTCGACTACGAGCGGCTAG
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