mRNA_Ecto-sp13_S_contig6103.16781.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6103.16781.1
Unique NamemRNA_Ecto-sp13_S_contig6103.16781.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6103.16781.1 vs. uniprot
Match: D8LG37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG37_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 1.250e-90
Identity = 138/181 (76.24%), Postives = 153/181 (84.53%), Query Frame = 3 
Query:  231 MRRWNHQDVRSQFYIELPSICYAEDPSGLSPSADAYCAAYWFWQHEAIRQGPGHWVGGESETSMVNTTFFGILAAFLILKECDSFLPLAKVISLEELSAVIGLYETHPETLGLAGEHGKLFAKRAKKLWQELHEAPEEFMDNDAMDVEDQKPAGTEPELMAKLLATPRDSGITDLFQGLKT 773
            MR  +HQDVRSQFYIELPSI YAEDP GLSPS +AY AAYWFWQH+AIRQGPGHWVGGE ET+M NT FFGILAA+LILK+CD +LPL KVISLEEL AVIGLY++HPETLGLAGE GK  A+RA KLWQELHEA  +F D DAMDVEDQKPA TEP+L A+L ATP+ SGIT+ F G  T
Sbjct:    1 MRHAHHQDVRSQFYIELPSIHYAEDPGGLSPSEEAYVAAYWFWQHQAIRQGPGHWVGGECETTMANTPFFGILAAYLILKKCDFYLPLEKVISLEELCAVIGLYKSHPETLGLAGEQGKCLAERANKLWQELHEA--QFTDKDAMDVEDQKPAATEPDLTAELRATPQQSGITNAFGGRFT 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6103.16781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG37_ECTSI1.250e-9076.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6103contigEcto-sp13_S_contig6103:5648..7132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size954
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_002080.1
Cds size696
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.2802985-UTR-Ecto-sp13_S_contig6103:5647..57271681463851.2802985-UTR-Ecto-sp13_S_contig6103:5647..5727Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6103 5648..5727 +
1681463851.3222766-UTR-Ecto-sp13_S_contig6103:6954..71321681463851.3222766-UTR-Ecto-sp13_S_contig6103:6954..7132Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6103 6955..7132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.2940166-CDS-Ecto-sp13_S_contig6103:5727..61621681463851.2940166-CDS-Ecto-sp13_S_contig6103:5727..6162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6103 5728..6162 +
1681463851.307787-CDS-Ecto-sp13_S_contig6103:6693..69541681463851.307787-CDS-Ecto-sp13_S_contig6103:6693..6954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6103 6694..6954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6103.16781.1prot_Ecto-sp13_S_contig6103.16781.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6103 5728..6954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6103.16781.1

>prot_Ecto-sp13_S_contig6103.16781.1 ID=prot_Ecto-sp13_S_contig6103.16781.1|Name=mRNA_Ecto-sp13_S_contig6103.16781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
MDRFAHEHPEFTCNPVVLMSKAAGIMGSAKQVKTLCYEDCVNAFTPLENV
MRRWNHQDVRSQFYIELPSICYAEDPSGLSPSADAYCAAYWFWQHEAIRQ
GPGHWVGGESETSMVNTTFFGILAAFLILKECDSFLPLAKVISLEELSAV
IGLYETHPETLGLAGEHGKLFAKRAKKLWQELHEAPEEFMDNDAMDVEDQ
KPAGTEPELMAKLLATPRDSGITDLFQGLKT*
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mRNA from alignment at Ecto-sp13_S_contig6103:5648..7132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6103.16781.1 ID=mRNA_Ecto-sp13_S_contig6103.16781.1|Name=mRNA_Ecto-sp13_S_contig6103.16781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1485bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6103:5648..7132+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCTCCCTTGGTGGGGCTCACTGTCTGCCTCTCGACCTCTCTATAGCC
TCTGAACCTCTCTCCTCGGGCGTGTCAGCAATGGACCGGTTTGCGCATGA
ACACCCCGAGTTTACTTGCAACCCTGTAGTTCTGATGAGCAAGGCGGCAG
GGATAATGGGGAGCGCAAAACAAGTCAAGACCCTGTGCTACGAAGATTGC
GTGAATGCGTTCACTCCTCTGGAGAATGTCATGCGCCGCTGGAACCACCA
AGACGTTCGCTCTCAGTTTTACATCGAGTTACCCTCCATCTGCTACGCTG
AGGATCCCAGTGGCCTTTCACCCAGCGCGGACGCGTATTGCGCCGCCTAT
TGGTTTTGGCAACATGAGGCCATTCGGCAAGGTCCCGGACACTGGGTCGG
AGGCGAAAGTGAAACATCCATGGTCAACACTACATTTTTTGGCATCCTGG
CGGCGTTTCTCATTCTGAAGGAGTGCGACTCCTTCCTTCCCTTGGCGAAA
GTTATTTCGCTTGAGGTAGGTCTCAGGAGGGTTCCAGTAGTTGTGTGCCT
GAAACGACGTGGTATGTACTGTAGCAGTTGATCTACTGCTGTAGACTATG
TCCTCTAAAGGAGTATGTGGTTAGCACTCGAGAAAGCTTGATGGAGACAC
AGGGTCACAACTGCTGTAGATGAGCAGCAACAGAGTACTCATTTTGCACC
TATTGCCTACTGCGTGTGCGCTTGAACTGATGGACATTACCGGAATATCG
ATATCGCAATCCGGCCACAGTAACAATGAACAGACGTCATCTTCTTGGAT
AGCGAGATCAACATACCAAGCAAACACGCTCGTAGTAAATGGGCTCTCCC
GGCAGGGGGGTTCCAGGTTGCGATGCGCCAACGGAGTCAGGGGATATAGT
TGCCAAACAAACCAGTTCTAGTCGACGGTGGAATAATCAACTAGTTGTTT
GTGGAGTCTACAGCAGGTAGTCTAGACTCCTGCTACTTGTCCGCCATGTT
GTACAACGAAACGCCTTCGTGGCCACGCTTGCTTGTCTTCCGAAAGGAGC
TTAGTGCTGTGATCGGGCTATACGAAACTCACCCGGAAACACTGGGGCTT
GCCGGGGAACACGGGAAACTTTTCGCCAAACGGGCCAAGAAGCTCTGGCA
AGAGCTACATGAAGCACCTGAGGAATTTATGGACAACGACGCCATGGATG
TCGAAGATCAAAAACCAGCGGGAACGGAGCCGGAGTTGATGGCCAAACTG
CTGGCTACCCCGCGGGATTCCGGGATAACTGATCTTTTCCAGGGCCTGAA
AACATAAAACTTCATTCCAGCCGCTACTTGTAGGTTTGTTTGCATGTGAG
ACTGTTGGCTTGTCAAACTTGCGCTCCAGAGGCTAGCCGTTTTCCTCCGT
CATACTGTACAGCAGCTGCAGAGGGGAGATTATAGGCACCTCAGGTCGTC
GAAGCATGTTGGATGATCAAGATCGTGTATGTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6103:5648..7132+

>mRNA_Ecto-sp13_S_contig6103.16781.1 ID=mRNA_Ecto-sp13_S_contig6103.16781.1|Name=mRNA_Ecto-sp13_S_contig6103.16781.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6103:5648..7132+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGGTTTGCGCATGAACACCCCGAGTTTACTTGCAACCCTGTAGT
TCTGATGAGCAAGGCGGCAGGGATAATGGGGAGCGCAAAACAAGTCAAGA
CCCTGTGCTACGAAGATTGCGTGAATGCGTTCACTCCTCTGGAGAATGTC
ATGCGCCGCTGGAACCACCAAGACGTTCGCTCTCAGTTTTACATCGAGTT
ACCCTCCATCTGCTACGCTGAGGATCCCAGTGGCCTTTCACCCAGCGCGG
ACGCGTATTGCGCCGCCTATTGGTTTTGGCAACATGAGGCCATTCGGCAA
GGTCCCGGACACTGGGTCGGAGGCGAAAGTGAAACATCCATGGTCAACAC
TACATTTTTTGGCATCCTGGCGGCGTTTCTCATTCTGAAGGAGTGCGACT
CCTTCCTTCCCTTGGCGAAAGTTATTTCGCTTGAGGAGCTTAGTGCTGTG
ATCGGGCTATACGAAACTCACCCGGAAACACTGGGGCTTGCCGGGGAACA
CGGGAAACTTTTCGCCAAACGGGCCAAGAAGCTCTGGCAAGAGCTACATG
AAGCACCTGAGGAATTTATGGACAACGACGCCATGGATGTCGAAGATCAA
AAACCAGCGGGAACGGAGCCGGAGTTGATGGCCAAACTGCTGGCTACCCC
GCGGGATTCCGGGATAACTGATCTTTTCCAGGGCCTGAAAACATAA
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