mRNA_Ecto-sp13_S_contig6103.16780.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6103.16780.1
Unique NamemRNA_Ecto-sp13_S_contig6103.16780.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6103.16780.1 vs. uniprot
Match: D8LG36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG36_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.130e-21
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 MSSVFRRNASRSLFLCISCALLGSCSHFGKGRKQDTLGKRAITCSTSVPV 150
            MSS+FRRNAS+ LFLCISCALLGSCS FGKGRKQDTLG  AITCST +PV
Sbjct:    1 MSSLFRRNASQPLFLCISCALLGSCSQFGKGRKQDTLGNHAITCSTVMPV 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6103.16780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG36_ECTSI1.130e-2184.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6103contigEcto-sp13_S_contig6103:2983..3568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size229
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002090.1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.2309551-CDS-Ecto-sp13_S_contig6103:2982..31101681463851.2309551-CDS-Ecto-sp13_S_contig6103:2982..3110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6103 2983..3110 +
1681463851.2422936-CDS-Ecto-sp13_S_contig6103:3468..35681681463851.2422936-CDS-Ecto-sp13_S_contig6103:3468..3568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6103 3469..3568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6103.16780.1prot_Ecto-sp13_S_contig6103.16780.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6103 2983..3568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6103.16780.1

>prot_Ecto-sp13_S_contig6103.16780.1 ID=prot_Ecto-sp13_S_contig6103.16780.1|Name=mRNA_Ecto-sp13_S_contig6103.16780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MSSVFRRNASRSLFLCISCALLGSCSHFGKGRKQDTLGKRAITCSTSVPV
TVSPDSRRRERSSTRRVQFGYLTGGR
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mRNA from alignment at Ecto-sp13_S_contig6103:2983..3568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6103.16780.1 ID=mRNA_Ecto-sp13_S_contig6103.16780.1|Name=mRNA_Ecto-sp13_S_contig6103.16780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6103:2983..3568+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTAGTGTGTTCCGGAGGAACGCTTCCCGATCGCTCTTCTTGTGCAT
CTCATGTGCGCTCCTTGGGTCATGTTCTCATTTCGGCAAGGGCCGCAAAC
AAGATACGCTAGGGAAGCGCGCAATCACGTGAGACGCCTGACGTGTATAG
CGTGACCTCCTTCGAACGTTTGTAGTCGCGCAGATGATGTCGAAACGAAT
ATGGTAATCGCATGCTAGCGGTCGGCCAAGTGTCAATGCGTGCGTTGAAA
CTGGGAAGTGACATTGCGTGCATGAAAATTGGTCGCCTTGGACTTTGAGC
GCCGAATTTCTCGGCAGACGTAGCCCGCCTCATGCGTTGTGATTCAACCG
TCACCGCCGCTGTGTCGTTGACGACAGCAGGCAGTGCCTACACGGACGTG
CATCAAGCCAGGTCGCTTGACATGTCACTCATCTCTCAAGCATCCCTTTG
ACGCCCCTACCTCGCTCACCCGATTGATCTGGACAGGTGCTCGACATCGG
TGCCCGTGACCGTTTCGCCTGACTCCCGACGACGAGAGCGATCCTCAACA
CGTCGCGTGCAGTTTGGATATCTTACGGGAGGACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6103:2983..3568+

>mRNA_Ecto-sp13_S_contig6103.16780.1 ID=mRNA_Ecto-sp13_S_contig6103.16780.1|Name=mRNA_Ecto-sp13_S_contig6103.16780.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6103:2983..3568+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTAGTGTGTTCCGGAGGAACGCTTCCCGATCGCTCTTCTTGTGCAT
CTCATGTGCGCTCCTTGGGTCATGTTCTCATTTCGGCAAGGGCCGCAAAC
AAGATACGCTAGGGAAGCGCGCAATCACGTGCTCGACATCGGTGCCCGTG
ACCGTTTCGCCTGACTCCCGACGACGAGAGCGATCCTCAACACGTCGCGT
GCAGTTTGGATATCTTACGGGAGGACGC
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