prot_Ecto-sp13_S_contig61013.16778.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig61013.16778.1
Unique Nameprot_Ecto-sp13_S_contig61013.16778.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length88
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61013.16778.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.500e-25
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:    1 NRISYLPETIGLATGLRTLNLQGNCLRDIPNGLCLLQILETLDLAQNMLVN 51
            NRISYLPETIGLATGLR LNLQGNCLRDIPNGLCLLQ+LETLDLAQNMLVN
Sbjct:   82 NRISYLPETIGLATGLRKLNLQGNCLRDIPNGLCLLQVLETLDLAQNMLVN 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61013.16778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI2.500e-2596.08Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 14..36
e-value: 12.0
score: 12.7
coord: 61..83
e-value: 0.11
score: 21.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 15..74
e-value: 3.8E-9
score: 36.2
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 38..58
score: 5.055
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 15..36
score: 8.582
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 63..84
score: 7.72
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..86
e-value: 9.2E-22
score: 79.2
NoneNo IPR availablePANTHERPTHR45752FAMILY NOT NAMEDcoord: 1..82
NoneNo IPR availablePANTHERPTHR45752:SF44P53-INDUCED DEATH DOMAIN-CONTAINING PROTEIN 1coord: 1..82
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 1..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61013contigEcto-sp13_S_contig61013:218..817 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61013.16778.1mRNA_Ecto-sp13_S_contig61013.16778.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig61013 218..817 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig61013.16778.1 ID=prot_Ecto-sp13_S_contig61013.16778.1|Name=mRNA_Ecto-sp13_S_contig61013.16778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
NRISYLPETIGLATGLRTLNLQGNCLRDIPNGLCLLQILETLDLAQNMLV
NESLPKEIGGLKKLRRLDLASNRLEEIPDEVQKVATHE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf