mRNA_Ecto-sp13_S_contig61013.16778.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61013.16778.1
Unique NamemRNA_Ecto-sp13_S_contig61013.16778.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61013.16778.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.500e-25
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 NRISYLPETIGLATGLRTLNLQGNCLRDIPNGLCLLQILETLDLAQNMLVN 153
            NRISYLPETIGLATGLR LNLQGNCLRDIPNGLCLLQ+LETLDLAQNMLVN
Sbjct:   82 NRISYLPETIGLATGLRKLNLQGNCLRDIPNGLCLLQVLETLDLAQNMLVN 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61013.16778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI2.500e-2596.08Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61013contigEcto-sp13_S_contig61013:218..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.5
Seed ortholog evalue4.1e-19
Seed eggNOG ortholog2880.D7G5C9
Preferred nameLRRC59
Model size264
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005789,GO:0009295,GO:0012505,GO:0016020,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0042175,GO:0042645,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0098827
Exons2
EggNOG free text desc.Leucine rich repeat
EggNOG OGsCOG4886@1,KOG0473@2759
Cds size264
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.1436563-CDS-Ecto-sp13_S_contig61013:217..3701681463851.1436563-CDS-Ecto-sp13_S_contig61013:217..370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61013 218..370 +
1681463851.1586688-CDS-Ecto-sp13_S_contig61013:706..8171681463851.1586688-CDS-Ecto-sp13_S_contig61013:706..817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61013 707..817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61013.16778.1prot_Ecto-sp13_S_contig61013.16778.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61013 218..817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61013.16778.1

>prot_Ecto-sp13_S_contig61013.16778.1 ID=prot_Ecto-sp13_S_contig61013.16778.1|Name=mRNA_Ecto-sp13_S_contig61013.16778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
NRISYLPETIGLATGLRTLNLQGNCLRDIPNGLCLLQILETLDLAQNMLV
NESLPKEIGGLKKLRRLDLASNRLEEIPDEVQKVATHE
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mRNA from alignment at Ecto-sp13_S_contig61013:218..817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61013.16778.1 ID=mRNA_Ecto-sp13_S_contig61013.16778.1|Name=mRNA_Ecto-sp13_S_contig61013.16778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61013:218..817+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCGTATCTCTTATCTTCCAGAAACAATCGGATTGGCGACCGGACTCCG
AACACTCAACCTTCAGGGAAACTGTTTGCGAGACATTCCGAACGGTCTGT
GTCTCCTACAGATCCTCGAAACGCTGGATCTCGCGCAGAATATGCTGGTG
AATGTAACGCATGCGGTATAGAGACAATACGCTAGATTCGGCCCTTCTGT
TGAGCGACTTGGAGCATCAATGTTATCCCACGTCCTGTCGATTTGCGTGA
AAATCTCCGGCACCTTGCTTCAAAATGTGAGCTCAGGACGGATTGAAGTA
GGGTATAGTATTGCTACGTTGTAGGAAGAAATTCTGCTATTCATTCACCC
ACTTGTACATCTGTAGATGTCTTTCACTCACTTCTACAATGTCTTCTAGT
ACGTGTCGTCGAAAACACGAATGAATTCCGGGGTCATGTGATCGTTTCGA
CGACGTATCGGGATTCTTCGCACGTTGAACAATTTGCAGGAAAGTCTCCC
AAAAGAAATCGGGGGATTGAAGAAACTTCGGCGTTTGGATCTGGCGAGTA
ACCGTCTCGAAGAAATTCCAGACGAGGTACAGAAAGTGGCCACACATGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61013:218..817+

>mRNA_Ecto-sp13_S_contig61013.16778.1 ID=mRNA_Ecto-sp13_S_contig61013.16778.1|Name=mRNA_Ecto-sp13_S_contig61013.16778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61013:218..817+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCGTATCTCTTATCTTCCAGAAACAATCGGATTGGCGACCGGACTCCG
AACACTCAACCTTCAGGGAAACTGTTTGCGAGACATTCCGAACGGTCTGT
GTCTCCTACAGATCCTCGAAACGCTGGATCTCGCGCAGAATATGCTGGTG
AATGAAAGTCTCCCAAAAGAAATCGGGGGATTGAAGAAACTTCGGCGTTT
GGATCTGGCGAGTAACCGTCTCGAAGAAATTCCAGACGAGGTACAGAAAG
TGGCCACACATGAG
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