mRNA_Ecto-sp13_S_contig61003.16777.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61003.16777.1
Unique NamemRNA_Ecto-sp13_S_contig61003.16777.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A6H5KX71_9PHAE (Dolichyl-phosphate beta-glucosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX71_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.080e-24
Identity = 56/75 (74.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    7 QGMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTG-----------------KHGLVVGSRAHMEGEAVAK 180
            +GMLRMRG+YGLMVDADAATEIQDLDRLLIRMRDVETTG                 KHGLVVGSRAHMEGEAVAK
Sbjct:  159 KGMLRMRGKYGLMVDADAATEIQDLDRLLIRMRDVETTGVGAGVRGAAVGEGGPGKKHGLVVGSRAHMEGEAVAK 233
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A7S2XFF5_9EUKA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFF5_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 2.010e-12
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 ILQGMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGK-HGLVVGSRAHMEGEAVAKVRAFVFFYRTNLKNGVNF 234
            + QG L  RGEY LMVDAD ATEI+DLDRL+  M   E     +G+VVGSRAH++ +AVAK +    +YR+ L +G +F
Sbjct:  140 VQQGSLHARGEYLLMVDADGATEIKDLDRLMPAMTACEDAKSGYGVVVGSRAHLQEKAVAKRK----WYRSVLMHGFHF 214
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A7S3YV48_9EUKA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YV48_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 2.010e-12
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 ILQGMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDV-ETTGKHGLVVGSRAHMEGEAVAKVRAFVFFYRTNLKNGVNF 234
            + QG L  RGEY LMVDAD ATEI+DLDRL+  M    +    +G+VVGSRAH++ +AVAK +    +YR+ L +G +F
Sbjct:  141 VQQGCLHARGEYILMVDADGATEIKDLDRLITAMEACKDAKSGYGVVVGSRAHLQEKAVAKRK----WYRSVLMHGFHF 215
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A7S3Y170_HETAK (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y170_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 4.480e-12
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:   10 GMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETT---------GKHGLVVGSRAHMEGEAVAKVRAFVFFYRTNLKNGVN 231
            GML  RGEY LMVDAD ATEI DL +L   M+  ET          G  G+ +GSRAHM+GEAVA+ +    +YRT L  G++
Sbjct:  158 GMLLCRGEYALMVDADGATEISDLRKLFAEMKKTETRKAVGPWGFEGLFGVALGSRAHMQGEAVARRK----WYRTVLMLGLH 236
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A835ZBS6_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.190e-11
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 ILQGMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGKHGLVVGSRAHMEGEAVAKVRAFVFFYRT 210
            I +GMLRMRG Y LM DADAA +I+DL RLL   + ++  G  G+ +GSRAH+E E+VA  RA+   YRT
Sbjct:  157 IREGMLRMRGRYALMADADAAADIEDLGRLLAATQQIQANGL-GVGIGSRAHIEAESVA-TRAW---YRT 221
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A0L0FH80_9EUKA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FH80_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.400e-9
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   10 GMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGKHGLVVGSRAHM-EGEAVAKVRAFVFFYRTNLKNGVNF 234
            GM   RG+Y LMVDADAAT+I DLDR+  +++++E  G +G+VVGSRAHM E E+ A  R+    +R  L+ G +F
Sbjct:  100 GMEVARGKYILMVDADAATDINDLDRVEDKLKEIERDG-YGIVVGSRAHMAEDESPAAQRSA---FRRFLQKGFHF 171
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A7S2RH03_9STRA (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH03_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.540e-9
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 ILQGMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGKHGLVVGSRAHMEGEAVAKVRAFVFFYRTNLKNGVN 231
            I +GMLR RG+Y LM DAD ATEI D  RL   +R VE  G  G+ +GSRAH+E +++A+ RAF   +RT L  G++
Sbjct:  119 IRKGMLRGRGQYLLMADADGATEISDYARLDESLRTVEQGGM-GVAIGSRAHLEEKSIAQ-RAF---HRTVLMWGMH 190
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A5C3F6T1_9BASI (Dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A5C3F6T1_9BASI)

HSP 1 Score: 59.3 bits (142), Expect = 1.770e-8
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 ILQGMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGKHGLVVGSRAHM-EGEAVAKVRAFV 195
            +  G+L  RG   L  DAD AT   DL  L + MR + T  +HG+VVGSRAHM + EAV K R+FV
Sbjct:  221 VRHGVLHARGSLILFADADGATRFGDLSNLCVEMRRILTPARHGIVVGSRAHMVKSEAVVK-RSFV 285
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: UPI00077FBF6A (dolichyl-phosphate beta-glucosyltransferase n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FBF6A)

HSP 1 Score: 58.5 bits (140), Expect = 2.980e-8
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:   10 GMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGKHGLVVGSRAHMEGEAVAKVRAFVFFYRTNLKNGVNF 234
            GML  RG Y L  DAD AT+ +D ++L   MR       + +VVGSRAH+E EA+A       F+RT L  G +F
Sbjct:  152 GMLYARGRYLLFADADGATKFEDFEKLESEMRQSTVENIYSIVVGSRAHLEKEAIASRS----FFRTILMYGFHF 222
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BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Match: A0A1L8ECY5_HAEIR (Dolichyl-phosphate beta-glucosyltransferase n=2 Tax=Haematobia irritans TaxID=7368 RepID=A0A1L8ECY5_HAEIR)

HSP 1 Score: 57.0 bits (136), Expect = 1.060e-7
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   10 GMLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGKH-GLVVGSRAHMEGEAVAKVRAFVFFYRTNLKNGVNF 234
            GML  RG   L  DAD AT+  DLD+L   +  +    KH  +V+GSRAH+E EA+A   AF    RT L +G +F
Sbjct:  152 GMLSARGRNLLFADADGATKFSDLDKLFNELAKINKDWKHDAVVIGSRAHLEQEAIATRSAF----RTFLMHGFHF 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61003.16777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX71_9PHAE2.080e-2474.67Dolichyl-phosphate beta-glucosyltransferase n=2 Ta... [more]
A0A7S2XFF5_9EUKA2.010e-1251.90Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A7S3YV48_9EUKA2.010e-1250.63Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A7S3Y170_HETAK4.480e-1249.40Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A835ZBS6_9STRA4.190e-1154.29Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A0L0FH80_9EUKA1.400e-950.00Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A7S2RH03_9STRA4.540e-950.65Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A5C3F6T1_9BASI1.770e-850.00Dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
UPI00077FBF6A2.980e-844.00dolichyl-phosphate beta-glucosyltransferase n=1 Ta... [more]
A0A1L8ECY5_HAEIR1.060e-744.74Dolichyl-phosphate beta-glucosyltransferase n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61003contigEcto-sp13_S_contig61003:7..291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score99.4
Seed ortholog evalue7.6e-19
Seed eggNOG ortholog2880.D8LR86
Preferred nameALG5
Model size234
KEGG rclassRC00005,RC02795
KEGG koko:K00729,ko:K03027
KEGG ReactionR00435,R00441,R00442,R00443,R01005
KEGG Pathwayko00230,ko00240,ko00510,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map00510,map01100,map03020,map04623,map05169
KEGG ModuleM00055,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0001667,GO:0001703,GO:0001704,GO:0001707,GO:0003002,GO:0003674,GO:0003824,GO:0004576,GO:0004581,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006493,GO:0006629,GO:0006807,GO:0006928,GO:0006996,GO:0007009,GO:0007029,GO:0007030,GO:0007043,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007498,GO:0007509,GO:0008078,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009953,GO:0009987,GO:0010004,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0019991,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034329,GO:0034330,GO:0034645,GO:0035251,GO:0036211,GO:0040003,GO:0040011,GO:0042074,GO:0042175,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043297,GO:0043412,GO:0043413,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045216,GO:0046527,GO:0048332,GO:0048598,GO:0048646,GO:0048729,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0061024,GO:0070085,GO:0071704,GO:0071840,GO:0090130,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.dolichyl-phosphate beta-glucosyltransferase activity
EggNOG OGsCOG0463@1,KOG2977@2759
EC2.4.1.117
Cds size222
COG Functional cat.M
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01003,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.0700502-CDS-Ecto-sp13_S_contig61003:6..1171681463851.0700502-CDS-Ecto-sp13_S_contig61003:6..117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61003 7..117 -
1681463851.0838413-CDS-Ecto-sp13_S_contig61003:168..2791681463851.0838413-CDS-Ecto-sp13_S_contig61003:168..279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61003 169..279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463851.1018393-UTR-Ecto-sp13_S_contig61003:279..2911681463851.1018393-UTR-Ecto-sp13_S_contig61003:279..291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61003 280..291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61003.16777.1prot_Ecto-sp13_S_contig61003.16777.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61003 7..279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61003.16777.1

>prot_Ecto-sp13_S_contig61003.16777.1 ID=prot_Ecto-sp13_S_contig61003.16777.1|Name=mRNA_Ecto-sp13_S_contig61003.16777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MLRMRGEYGLMVDADAATEIQDLDRLLIRMRDVETTGKHGLVVGSRAHME
GEAVAKVRAFVFFYRTNLKNGVNF
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mRNA from alignment at Ecto-sp13_S_contig61003:7..291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61003.16777.1 ID=mRNA_Ecto-sp13_S_contig61003.16777.1|Name=mRNA_Ecto-sp13_S_contig61003.16777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61003:7..291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTCCAGGGCATGCTGCGGATGCGGGGAGAGTACGGTCTAATGGTGGA
CGCGGACGCTGCTACTGAGATCCAAGACCTCGACAGGCTGCTGATCCGCA
TGCGTGACGTCGAGACGACTGGGGTCGGGACGGGGGTCCGCGGGGCTGCG
GTGGGGGAGAGGGGGTCCGGAAAGAAACACGGGCTTGTGGTGGGAAGCAG
GGCACACATGGAGGGGGAGGCGGTGGCGAAGGTTCGTGCTTTTGTTTTCT
TTTACAGGACAAACTTAAAAAATGGGGTGAATTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61003:7..291-

>mRNA_Ecto-sp13_S_contig61003.16777.1 ID=mRNA_Ecto-sp13_S_contig61003.16777.1|Name=mRNA_Ecto-sp13_S_contig61003.16777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61003:7..291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGGATGCGGGGAGAGTACGGTCTAATGGTGGACGCGGACGCTGC
TACTGAGATCCAAGACCTCGACAGGCTGCTGATCCGCATGCGTGACGTCG
AGACGACTGGGAAACACGGGCTTGTGGTGGGAAGCAGGGCACACATGGAG
GGGGAGGCGGTGGCGAAGGTTCGTGCTTTTGTTTTCTTTTACAGGACAAA
CTTAAAAAATGGGGTGAATTTT
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