mRNA_Ecto-sp13_S_contig610.16771.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig610.16771.1
Unique NamemRNA_Ecto-sp13_S_contig610.16771.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: D7FLD6_ECTSI (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLD6_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 2.230e-91
Identity = 143/157 (91.08%), Postives = 146/157 (92.99%), Query Frame = 3 
Query:   54 MAPIMAAVVFLAAMTAANGFIAPLAGRHNAPLARSYSTAALQMSTEGGDDKPFVFPRSMLKKGKLEIPNFMGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEENVRQCSNALTPP 524
            MAPIMAAVVFLAAMTAANGFIAPLAG H+APLARSY+ AALQMSTEGGDDKPFVFPRSMLKKGKLEIPN+MGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLG FAEEN R    A   P
Sbjct:    1 MAPIMAAVVFLAAMTAANGFIAPLAGHHHAPLARSYAKAALQMSTEGGDDKPFVFPRSMLKKGKLEIPNYMGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGRFAEENGRPLIGAKYMP 157
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A835Z353_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z353_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.930e-29
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 3 
Query:  201 DKPFVFPRSMLKK-GKLEIPNFMGVGTMAWGDKKVGFVSDPKYKPK--EGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEEN 491
            D PF  P+S+L +  K E+P+ +G GT+AWGD + GF+ DPK +PK  +GEFNPADLQGA+ T++++G+ FFDT++ YG KS  +G SAEQLLG F +E+
Sbjct:   24 DTPFTIPKSLLSRVAKFEVPHEIGTGTLAWGDSERGFIGDPKQRPKAAQGEFNPADLQGAFETMLESGLAFFDTAETYGSKSIKDGMSAEQLLGRFIQES 123
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A7S2SPM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPM1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.840e-17
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 3 
Query:  240 GKLEIPNFMGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEEN 491
            G L IPN +GVGT+AWG+ K GF+S         ++NP DLQ  Y+TL++ G++FFDT+DVYG+K   +G S EQLLG F   N
Sbjct:  139 GSLSIPNGIGVGTLAWGEAKRGFMS---------KYNPGDLQVTYDTLLEGGVSFFDTADVYGHKYLRDGHSTEQLLGEFNARN 213
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A7S2U5U4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5U4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.320e-17
Identity = 51/117 (43.59%), Postives = 63/117 (53.85%), Query Frame = 3 
Query:  177 QMSTEGGDDKPFV---------FPRSMLKKGKLEIPNFMGVGTMAWGDKKVGFVSDPKYKP---KEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEEN 491
            Q +T+G D   F+         F      + +L IPN MG GT  WGD+   FV   K K    K G F P DLQ +YN LM+AG+TF DTS+ YG+KS     SAE +LG   EEN
Sbjct:  127 QHNTKGTDSTQFLSSGEENILDFTADYDDENELHIPNRMGFGTAHWGDETKKFVPKGKIKKSARKAGHFLPGDLQSSYNALMEAGVTFVDTSEQYGFKSRSSNLSAEHILGRCTEEN 243
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A0G4G9B9_VITBC (Aldo_ket_red domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G9B9_VITBC)

HSP 1 Score: 78.6 bits (192), Expect = 5.360e-13
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 3 
Query:  264 MGVGTMAWGDKKVGFVSDPKYKPKEGE----FNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEE 488
            +GVGT+AWGD K GFV++     +       F P D++ + + L+DAGITFFDT++VYGY++ P G+ +EQLLG   ++
Sbjct:   72 IGVGTLAWGDPKRGFVAEGAVSAEPSSESRPFGPDDVEMSGSMLVDAGITFFDTAEVYGYQNIPNGYQSEQLLGKLGKK 150
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A7R9ZHW1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHW1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.430e-12
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 3 
Query:  237 KGKLEIPNFMGVGTMAWGDKKVGFVSDPKYKPKE---GEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEENVRQ---CSNALTPP*LLELWWLHVARNG 566
            + +  IPN +G GT AWG+++ GF    K K K+   G +   DLQ +Y+TLM++GI F DTS+ YG     +  S+E ++G   +EN R     ++    P      W+H+   G
Sbjct:  167 ENEFHIPNRIGFGTAAWGNERKGFKVGKKLKKKDIKAGRYLAGDLQLSYDTLMESGIVFVDTSESYGRALEKKSLSSEHIVGRCVDENARVDPLVASTFANP------WMHLLEGG 276
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A7S1TWF0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWF0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.540e-11
Identity = 46/125 (36.80%), Postives = 65/125 (52.00%), Query Frame = 3 
Query:  144 PLARSYSTAALQMSTEG--GDDKPFVFPRSMLKKGKLEIPNFMGVGTMAWGDKKVGFVS-----DPKYKPKEGE--FNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEEN 491
            P A    T  + M +E   G    F+  R    K   ++ + MGVGTMAWG+  VGFV+         +   G+  F   DL  AY  L++ G+ FF+T++VYG  S+ E   AEQLLG F ++N
Sbjct:   76 PAAAPQRTLRVSMESESSFGSFSDFMATR----KKSFDVASGMGVGTMAWGEAGVGFVTGTGGTSTGQRKTFGKSLFAAGDLAAAYKVLVEGGVDFFETNEVYGLGSAGENHQAEQLLGQFRQQN 196
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A2R6WM73_MARPO (Aldo_ket_red domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WM73_MARPO)

HSP 1 Score: 62.4 bits (150), Expect = 1.450e-7
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:  231 LKKGKLEIPNFMGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTF 479
            L +  L+I   +G GT+ WGD   G+            +   DL  A++TL+  G+ FFDT++VYGY+    G S+EQLLG F
Sbjct:   66 LGRTSLQISK-LGTGTLQWGDPGSGYGKS---------YREEDLAEAFDTLVQGGVNFFDTAEVYGYQGIKSGTSSEQLLGKF 138
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A7S3BGR3_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BGR3_9VIRI)

HSP 1 Score: 60.8 bits (146), Expect = 3.690e-7
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 3 
Query:  264 MGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAE 485
            +G+GT+AWGD+  GF +          F   DL+  +   +  G+ +FDT++VYGYKS     SAE +LG F E
Sbjct:    4 VGIGTIAWGDESYGFGT---------RFREKDLEDVFRAAVGGGVGWFDTAEVYGYKSGQFEQSAEHMLGHFVE 68
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BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Match: A0A1J0ACR7_9CYAN (Putative oxidoreductase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1J0ACR7_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.710e-6
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 3 
Query:  231 LKKGKLEIPNFMGVGTMAWGDKKVGFVSDPKYKPKEGEFNPADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEE 488
            L + +LE+   +G+GT AWGD+               ++N  DLQ AY + ++AGITFFDT++VYG   S      EQLLG F  E
Sbjct:   11 LGQTELEVSP-LGIGTWAWGDQLFWDYGK--------QYNDQDLQAAYRSSIEAGITFFDTAEVYGLGRS------EQLLGQFVRE 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig610.16771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLD6_ECTSI2.230e-9191.08Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A835Z353_9STRA3.930e-2954.00NADP-dependent oxidoreductase domain-containing pr... [more]
A0A7S2SPM1_9STRA1.840e-1751.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2U5U4_9STRA2.320e-1743.59Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A0G4G9B9_VITBC5.360e-1345.57Aldo_ket_red domain-containing protein n=1 Tax=Vit... [more]
A0A7R9ZHW1_9STRA9.430e-1234.48Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1TWF0_9STRA1.540e-1136.80Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A2R6WM73_MARPO1.450e-738.55Aldo_ket_red domain-containing protein n=2 Tax=Mar... [more]
A0A7S3BGR3_9VIRI3.690e-739.19Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A1J0ACR7_9CYAN1.710e-640.70Putative oxidoreductase n=2 Tax=Cyanobacteria TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig610contigEcto-sp13_S_contig610:1989..4179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score285.4
Seed ortholog evalue1.6e-74
Seed eggNOG ortholog2880.D7FLD6
Model size782
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-12_007760.1
Cds size474
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463850.5912879-UTR-Ecto-sp13_S_contig610:1988..22431681463850.5912879-UTR-Ecto-sp13_S_contig610:1988..2243Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig610 1989..2243 -
1681463850.648313-UTR-Ecto-sp13_S_contig610:4126..41791681463850.648313-UTR-Ecto-sp13_S_contig610:4126..4179Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig610 4127..4179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463850.6075265-CDS-Ecto-sp13_S_contig610:2243..24051681463850.6075265-CDS-Ecto-sp13_S_contig610:2243..2405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig610 2244..2405 -
1681463850.6193194-CDS-Ecto-sp13_S_contig610:2706..28481681463850.6193194-CDS-Ecto-sp13_S_contig610:2706..2848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig610 2707..2848 -
1681463850.632323-CDS-Ecto-sp13_S_contig610:3956..41261681463850.632323-CDS-Ecto-sp13_S_contig610:3956..4126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig610 3957..4126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig610.16771.1prot_Ecto-sp13_S_contig610.16771.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig610 2244..4126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig610.16771.1

>prot_Ecto-sp13_S_contig610.16771.1 ID=prot_Ecto-sp13_S_contig610.16771.1|Name=mRNA_Ecto-sp13_S_contig610.16771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MAPIMAAVVFLAAMTAANGFIAPLAGRHNAPLARSYSTAALQMSTEGGDD
KPFVFPRSMLKKGKLEIPNFMGVGTMAWGDKKVGFVSDPKYKPKEGEFNP
ADLQGAYNTLMDAGITFFDTSDVYGYKSSPEGFSAEQLLGTFAEENVRQC
SNALTPP*
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mRNA from alignment at Ecto-sp13_S_contig610:1989..4179-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig610.16771.1 ID=mRNA_Ecto-sp13_S_contig610.16771.1|Name=mRNA_Ecto-sp13_S_contig610.16771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig610:1989..4179- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAACTCAGTCTTACACCGGCGCCAGATAGATACACAGAACGACGCG
GTCATGGCGCCTATCATGGCGGCAGTGGTGTTCCTGGCAGCAATGACGGC
TGCAAACGGCTTCATTGCTCCCCTAGCCGGCCGCCATAATGCACCGCTGG
CGCGATCCTATTCAACGGCTGCCCTCCAGATGTCAACGGAGGGAGGGGAC
GACAAACCTTTCGTCTTCCCCAGGTGCGCGACCGGCGAATTGTGCGAAGC
GGCTACTCTGTTGCCTTTATACGCTGCTGTGACAGGCTTGGTATAGCAGG
TTTCCATGGCGAGCTGTACTCCCCTGCCATATGAAGATGGAGGTGTTTGC
TCATATAAGGAAATCTGCATACAAACGGAAACATGACACTGAGTTTTAGC
CTCGAGAGCAAAAAAACAGGCCAGACGCCGTAGGCACGCCGCCTCGCTCT
CACCGTCTTCAGAGTCCGTGTTGCTGCTGCGTTGTTGCACAAAGCGATGG
TATCAATTATGTCATCCACAACGCGGCAGGAGGTTCTTAGTTTGCGGTCA
ACGTAGCAAGACCGTCCCAGTTGATGTATAGCAGATGAATAAAAGCATTC
CGAAGACAAACAGAAACGACATTACAGAGCAGGCATCTTGTGGCAATGAT
CATGTACAGTTTCTCTGAAGTACTTCTGCTGTGAAGAGACAACGTGCAAG
AGCCGCGTCCTGCGACGTTCTCCACGAGACCTCGCCTGCCTTGTTTGATT
TATCTACTCTGTGATGGCTTATTCGTGTAACTGGGGGTAGTATATATATA
TATTATATGAAGAACCCAGTAACCTGTGTGTCAACTTAGGGACAACACAG
CAGTTTTCAACCTGTCTTGAAACGCATTCGCACTATTTCTAGCGTTCGTT
CCCCACAAGCGCACGGTACGTTCTCGTTACTTTTGCAGTGAATTGCGCAC
AACATGGAGGGTTCCGTGGTATGTCCATGTTGGCCTGTACATTGGTCGCT
TGTTGAAGCGCTGTGGCTTCACCGTCTCAAAGAATTTTATGAATCCGTGA
TGGAAATGACTCCGTCACCCTGGACATGCGAGACGATCGATACTTGCATC
CCAGCGCTGCCGGAATCCTCCACTGCAGTGCAGACGACAGCAGATGCAAG
AGTGCGGAGTTAGTTTTTGCGACAGTTTCATACTTGTCGCTGAGTTCCAG
TAGGCAGAACGCGGAATTCGACGGTGTATTGAAGCGAGAGGTGTGTACCA
CCTTGGATATACCCATGCACACTACCGAGCCCAAAAGCGCACAAACTCGC
AGAATGATCAACCGTTGCTTTGATATCGCAGGAGCATGCTGAAGAAGGGA
AAGCTGGAGATCCCCAATTTTATGGGCGTCGGCACCATGGCTTGGGGGGA
CAAGAAAGTAGGGTTCGTGAGCGATCCCAAGTACAAGCCGAAGGAGGGCG
AGTTCAACCCGGCGGACCTTCAGGTGCATAGTTGTTGCTGAATACAGTAC
CATTGGACGGCGGTTCGTCGTTCGCTCATCGAACAGTGAACCTCAACCAG
TTGTTACCTTCAAATTTCTATAGTCTCTGAATGAGTGTCGTTTGTTTTAG
ACTTGTATTGGCTTCCGCCTCTTCGTTCTAGGCATTCCCCACTCTATCGT
CCGTGCGCCTCCACGTCACCGAGAAGACTTACATACGTAGATATCATACC
CTCGACGAAATTGTGTGGTCATCGTCTCAAGGCGCCCATTGCTTGTATTC
TTTTTTACCCGCACTGAAAAACAGGGGGCGTACAATACCCTGATGGATGC
CGGGATAACCTTTTTCGACACATCGGACGTGTACGGGTACAAATCGTCCC
CAGAAGGCTTCAGCGCGGAGCAACTTTTGGGGACATTTGCCGAGGAAAAC
GTGAGGCAGTGTTCCAATGCTCTTACTCCACCGTAGCTCCTGGAGTTATG
GTGGCTGCATGTTGCTCGTAATGGCTATGGGTTGAGTGCTGCTGACTGTG
CGAGGAAAGCGCAACGTTCCAGAGAGCATTGATGGAATGGTTTGGCTTGC
ATGAATGGAGGAAGCTCAACCCTTCGTGTCAGGTAGCACGCAGTACAACA
TGTTCATCTCGACGGACAAGGCATGGAAACTGACGCTGCAACTGCAGAGT
ACTGCGTTGCAGTGGCTTCGAAGCGATGCGGGCATGAAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig610:1989..4179-

>mRNA_Ecto-sp13_S_contig610.16771.1 ID=mRNA_Ecto-sp13_S_contig610.16771.1|Name=mRNA_Ecto-sp13_S_contig610.16771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig610:1989..4179- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCTATCATGGCGGCAGTGGTGTTCCTGGCAGCAATGACGGCTGC
AAACGGCTTCATTGCTCCCCTAGCCGGCCGCCATAATGCACCGCTGGCGC
GATCCTATTCAACGGCTGCCCTCCAGATGTCAACGGAGGGAGGGGACGAC
AAACCTTTCGTCTTCCCCAGGAGCATGCTGAAGAAGGGAAAGCTGGAGAT
CCCCAATTTTATGGGCGTCGGCACCATGGCTTGGGGGGACAAGAAAGTAG
GGTTCGTGAGCGATCCCAAGTACAAGCCGAAGGAGGGCGAGTTCAACCCG
GCGGACCTTCAGGGGGCGTACAATACCCTGATGGATGCCGGGATAACCTT
TTTCGACACATCGGACGTGTACGGGTACAAATCGTCCCCAGAAGGCTTCA
GCGCGGAGCAACTTTTGGGGACATTTGCCGAGGAAAACGTGAGGCAGTGT
TCCAATGCTCTTACTCCACCGTAG
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