mRNA_Ecto-sp13_S_contig61.16769.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61.16769.1
Unique NamemRNA_Ecto-sp13_S_contig61.16769.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61.16769.1 vs. uniprot
Match: A0A6H5KPK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK2_9PHAE)

HSP 1 Score: 637 bits (1642), Expect = 1.060e-223
Identity = 460/551 (83.48%), Postives = 471/551 (85.48%), Query Frame = 1 
Query:    1 MSGRTLRPAVASSACSLVTKHNERATDTSLSFETPKKWAPLQAPPKVVAAPVAFATDEFADFGWPGDDETKLAEKEELDDLLRLGLELGDLECVFGNTNLNCDTADDDAEERDFENAGDCGSGKGGGWGKEPYLAGGATEELLLDADD------------------------------ALFDLPDLDLNCLEDKGDRGQGKHGCGSDSPKNTH-----EEAATEPPPDLEVLKQMSPAPSXXXXXXXXXXXXGSATLAVTPAPPSSAELPLRETPGALPGENLALAFDAAGDEHRPITMVDLTNAPAXXXXXTADAGGVAPSGVESNSDGKPDGANEHRESRPCRMTATGDTTIIDTRAVASVPANAVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTAPALEDPALLVAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 1548
            MSGRTLRPA ASSACSLVTKHNE ATDT L FETPKKWAPLQAPPKV+AAPVAFATDEFADFGWPGDDETKLAEKEELDDLLRLGLELGDLECVFGNT+LNCDTADDDAEE DFENAGD GS +GGGWGKEPY AGGATEELLLD DD                              ALFDLPDLDL+ LEDKGDRGQ KHGCGSDSPK+T      EEAAT+PPPDLEVL+QMSPA  XXXXXXXXXXXX            S AELP RETPGALPGENL +AFDA GDEHRPIT+VDLT+APA XXX T DAGGVAPS  E NSDGKPDGANEHRESR CRMT T D TIIDTRA ASV A+AVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RTAPALEDPALLVAAPAT XXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG
Sbjct:    1 MSGRTLRPAAASSACSLVTKHNEGATDTGLPFETPKKWAPLQAPPKVIAAPVAFATDEFADFGWPGDDETKLAEKEELDDLLRLGLELGDLECVFGNTDLNCDTADDDAEEGDFENAGDGGSDRGGGWGKEPYFAGGATEELLLDTDDXXXXXXXXXXXXXXXXXXXXXXXXXXDLQDALFDLPDLDLDRLEDKGDRGQEKHGCGSDSPKSTQVDCGAEEAATKPPPDLEVLQQMSPAXXXXXXXXXXXXXXXXXXXXXXXXXXSPAELPRRETPGALPGENLVVAFDAVGDEHRPITVVDLTDAPAPXXXPTVDAGGVAPSDSEDNSDGKPDGANEHRESRACRMTDTVDITIIDTRAGASVSADAVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RTAPALEDPALLVAAPATGXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 549
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BLAST of mRNA_Ecto-sp13_S_contig61.16769.1 vs. uniprot
Match: D7FLV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV8_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 2.480e-101
Identity = 266/285 (93.33%), Postives = 271/285 (95.09%), Query Frame = 1 
Query:  694 AELPLRETPGALPGENLALAFDAAGDEHRPITMVDLTNAPAXXXXXTADAGGVAPSGVESNSDGKPDGANEHRESRPCRMTATGDTTIIDTRAVASVPANAVAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTAPALEDPALLVAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 1548
            AELP RETPGALPGENLA+AFDA  DEHRPIT+VDLT+APAXXXX T DAGGV+PSGVE NSDGKPDG NEHRESRPCRMTATGDTTIID RAVASV A+  AGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RTAPALEDPALLVAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG
Sbjct:   33 AELPRRETPGALPGENLAVAFDAVRDEHRPITVVDLTDAPAXXXXPTVDAGGVSPSGVERNSDGKPDGDNEHRESRPCRMTATGDTTIIDARAVASVSADPAAGVPTRLLDAVDLWESAANAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RTAPALEDPALLVAAPATXXXXXXXXXXXXXXXXXXXXXXRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGKAVGSLSAISRYWGSGG 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61.16769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPK2_9PHAE1.060e-22383.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLV8_ECTSI2.480e-10193.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61contigEcto-sp13_S_contig61:27018..30783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1551
Hectar predicted targeting categorymitochondrion
Exons2
Cds size1551
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463850.432999-CDS-Ecto-sp13_S_contig61:27017..281261681463850.432999-CDS-Ecto-sp13_S_contig61:27017..28126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 27018..28126 -
1681463850.4428442-CDS-Ecto-sp13_S_contig61:30341..307831681463850.4428442-CDS-Ecto-sp13_S_contig61:30341..30783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61 30342..30783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61.16769.1prot_Ecto-sp13_S_contig61.16769.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61 27018..30783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61.16769.1

>prot_Ecto-sp13_S_contig61.16769.1 ID=prot_Ecto-sp13_S_contig61.16769.1|Name=mRNA_Ecto-sp13_S_contig61.16769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=517bp
MSGRTLRPAVASSACSLVTKHNERATDTSLSFETPKKWAPLQAPPKVVAA
PVAFATDEFADFGWPGDDETKLAEKEELDDLLRLGLELGDLECVFGNTNL
NCDTADDDAEERDFENAGDCGSGKGGGWGKEPYLAGGATEELLLDADDAL
FDLPDLDLNCLEDKGDRGQGKHGCGSDSPKNTHEEAATEPPPDLEVLKQM
SPAPSPPAATAAAAAATGSATLAVTPAPPSSAELPLRETPGALPGENLAL
AFDAAGDEHRPITMVDLTNAPAPAPAPTADAGGVAPSGVESNSDGKPDGA
NEHRESRPCRMTATGDTTIIDTRAVASVPANAVAGVPTRLLDAVDLWESA
ANAKKKKAAAAAATAAAASRERANRSAAMNKLSNTASSASSSSSSSKKKN
EFGKRRRSSGGGGRTAPALEDPALLVAAPATATSTTTGGGGGSASKVKGK
GKGRATKGKKVDPLVTLRDARGMARKPLIVQWLKSDGCESDEEAEAALGK
AVGSLSAISRYWGSGG*
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mRNA from alignment at Ecto-sp13_S_contig61:27018..30783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61.16769.1 ID=mRNA_Ecto-sp13_S_contig61.16769.1|Name=mRNA_Ecto-sp13_S_contig61.16769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3766bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61:27018..30783- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGGAGGACGCTTCGTCCTGCAGTAGCTTCTTCTGCGTGCAGTCT
CGTCACCAAGCACAACGAGAGAGCCACCGACACAAGCCTGTCTTTCGAGA
CCCCGAAAAAATGGGCACCTCTGCAAGCACCTCCGAAAGTTGTTGCTGCT
CCGGTTGCCTTTGCCACGGATGAGTTCGCCGACTTTGGTTGGCCGGGGGA
CGATGAGACTAAGTTGGCCGAAAAGGAAGAGCTCGATGACCTCCTACGCC
TAGGACTAGAGCTCGGAGATCTGGAGTGCGTGTTCGGCAACACAAATCTG
AACTGCGACACAGCAGATGATGACGCCGAAGAACGCGATTTCGAAAATGC
GGGTGATTGTGGGAGCGGCAAAGGAGGGGGGTGGGGCAAGGAGCCGTACC
TCGCGGGGGGTGCTACCGAGGAGCTGCTGCTAGATGCTGATGGTGGGAGC
GGCAAGGCCGGGGGGTGGGCTAAGGAGCCGTACCTCGAGGGAGGTGCTGC
CGAGGAGCTGCTGCTAGACGCTGACTTGCAAGGTGCACGTTCCAAAATGT
CTTTTGTTTATTTCTTCCAAACTAAAACATGTACTCCATCACCTCGTGTG
CCGGCGACTTTCATACTTTGCATGTTTCACGGCTACGCTGCGCTATGTAG
ACTGCTGTAGGCTCGCATGGACCCGTGCAAATCGCATGTCATTAAATGTT
CGTTGTCTGTGTACATCTGCAGCGAATCCCAAAAGGAGTACATCGGTGTT
TTGAGCATAATAATTCCCGAATAGAGATGGTCTCTCGAAACACTCAAGTC
TTTTTTTTTCCCGTCGGTGTAATTTTATGCTCACACCGCGATCTGGTGTC
AAAAGCCGATCTCGAGCTGCGGCACACGTCTGAGCTTGAAAGAAAAACAA
TAAGTGATGCATGGGCTGAACTTTCCTGGCAGCGAGATGGGAGCAGAGGG
GGCAGAGTGAAATAGAACAAACATGAAGGAGTGCGGCGTTTTTGTTTTTT
TTCCGTTTTTTCAACTGTGCCCGTCGCGGACCATCGGCCTGATAGTCGGT
AGTTTTTTTTTTCTCAACATATAGCGTAACGAATCCATCTCCATCCATAG
AAAGGTCTAGGATTAATCGGCAATGAGTTCATAGCGGTAGCGGGGTGCTA
TGACCTGTGTGTCTACGATTTCCCCATGGCAGCATTTAACGATGTCTACC
ATATGGATGGCAGATTTCGTTTTTTTTGTTGTTTATCTCCTGTATGCATA
GGAAGGCCGTTTGCTACGGTTCATACCACCAATTCCGAAGGAACAAGGCT
TGCGGGGATCCGGGCAATCTGCTGGGCTCCTCTTCTGTGTCCCGATCGGG
GCAACTACGTTCGGTATATCCCAATCCAACAGCAAACACGATTTCCATGG
ACGGAGGCTTTTTTTCTCACATAAAAGGAAGCGACCCCAGCATCTAGCTT
TCCGAACCTTCACTGCGAGGCTTGTGCGCCATCAGTACAGAACGAAGCCC
CCCTGCCGAATGAGGGACTGCGTGCGGCAAACCGGGGATATTGGACGGCG
GCCACATCCACAACTCGACGGGACCACGTAGGCGTAGTTCGAGCCGTACG
CCCTCCAGCATGCTCAATAAGTCTTTTGAGATGGTGCATAGGTTAGAAGG
GGCTTCGCGCCGAATTCGCCGTGTATTGTGCGGAACGTTCCTCGGTTTTC
TCATGGAAGGCGGGCGGAACAAACGGCGTGTCTCTCGCAGTTAAGGAGGA
TGTGTGTTCAAGATGTTGTCCATTGGCGAGCCCGGACTTTGTTCGTGCTG
GGGTCCCCTCCGAGTGGCGAGCAGTATAGGTGCAACTGAACGTTACCATG
GAAGCTGTTGAGTGGCAGCCCACCGGTAAAAAGGAAACGATGAAGCACGC
TGTTTGTCGTCGTGGACACGTTGAACTTTTGTTGCTAGCCTTGAGGACCA
GTACAAGATGGTTGTTGGGGTAACAGTTACAGGGGAAACAACACCCAATT
TCCAAGAACGCTCCCATATCCGCCGGCAGGATCACAGCTAGAAAAAGTTT
ACCGCCCGAGGACTTTCGATATCGTGGGCACCGAGGTGCAGAGAATCTTG
GACCTCGTGCTGCTGCCGTGACACGACATTCGTCTTTCTTCTCGCTTCCC
CGGCGGAAAATATAACATGACACCATACTCAACGTTTCGGATGTCAAGAT
ACGACGTTTCCGCGAACATATTCTTCCACGTCTTCTCTCATTTGCGGCGC
GCCGTTTCCCAGCCAGTCTTGCTATGGTTCGTGAGTGCAATCTCTGACGT
AGTTTTTCTTGAGCTAAAGCGTGAAACGAGGAATTGATGAAGCGTATGGA
ATTGATAGTAATTATTACTTGACATCCCATTATGCTGCCACTTTGTTCTC
GACTCAAGGTCGAGTGAGGATGGCATGGGTTTGTCCCCAGCCGGCTTCAG
ATGGAAGCATTGCTGGCTTCTTCTCTGCGTGCAGCAGCTGGATGAAAAAA
CCCTTTGAAGCAGTATCGATCATTCACCCTTTCGAAATGTCCTTGAGCAG
TTTTTGGACTCGCGCCTTCACCATGCCCCCGAACCCCGTCCGCCCGCCCT
TTGCGTCTCTCTCTCCGGCCGCGCCGACCGACAAACCGTACGGCACTCCT
TCTGCAGATGCACTGTTCGATTTGCCAGACCTCGATTTGAACTGCCTCGA
AGACAAGGGGGACCGCGGACAGGGAAAGCACGGGTGTGGCAGCGACAGCC
CGAAGAACACGCACGAGGAGGCCGCCACCGAGCCCCCCCCGGACCTTGAG
GTCCTCAAGCAAATGTCCCCCGCGCCCTCCCCACCCGCAGCAACCGCCGC
CGCCGCGGCAGCCACGGGCTCGGCAACATTAGCGGTCACCCCGGCCCCGC
CGTCCTCAGCGGAACTCCCCCTGCGGGAGACGCCCGGCGCGCTTCCCGGA
GAAAACCTTGCCCTTGCTTTCGACGCCGCCGGGGACGAACACCGCCCGAT
CACCATGGTGGACCTCACCAATGCGCCCGCGCCTGCTCCGGCTCCGACGG
CGGACGCGGGAGGAGTCGCGCCGTCTGGCGTGGAGAGCAACAGCGACGGA
AAACCTGACGGCGCCAACGAACACCGCGAAAGCCGCCCTTGTCGGATGAC
GGCCACCGGCGACACCACCATCATCGATACTCGAGCGGTTGCCTCTGTTC
CGGCGAACGCCGTTGCCGGGGTGCCCACGCGCCTTCTCGACGCGGTCGAC
CTGTGGGAGAGCGCTGCAAACGCCAAGAAGAAGAAGGCCGCCGCCGCGGC
GGCGACGGCGGCGGCGGCGTCTCGTGAGCGCGCGAACCGGTCAGCGGCGA
TGAACAAGCTCAGTAACACCGCCAGCAGCGCCAGCAGCAGCAGCAGCAGC
AGCAAGAAGAAGAACGAGTTCGGCAAGCGGCGCCGAAGCAGCGGCGGTGG
CGGCCGCACTGCGCCGGCTCTGGAGGACCCCGCGCTGCTGGTCGCCGCCC
CCGCTACGGCCACCAGCACCACCACCGGCGGCGGCGGCGGTTCAGCCAGC
AAGGTCAAAGGGAAGGGGAAGGGGAGGGCGACCAAGGGCAAGAAGGTGGA
CCCCCTGGTGACTCTTCGAGACGCGAGGGGCATGGCGAGGAAGCCGCTGA
TCGTGCAGTGGCTCAAATCGGACGGCTGCGAGAGCGACGAAGAGGCAGAG
GCCGCGTTGGGCAAGGCCGTTGGGAGCCTCTCGGCGATCTCCCGGTACTG
GGGGAGCGGGGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61:27018..30783-

>mRNA_Ecto-sp13_S_contig61.16769.1 ID=mRNA_Ecto-sp13_S_contig61.16769.1|Name=mRNA_Ecto-sp13_S_contig61.16769.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61:27018..30783- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGGAGGACGCTTCGTCCTGCAGTAGCTTCTTCTGCGTGCAGTCT
CGTCACCAAGCACAACGAGAGAGCCACCGACACAAGCCTGTCTTTCGAGA
CCCCGAAAAAATGGGCACCTCTGCAAGCACCTCCGAAAGTTGTTGCTGCT
CCGGTTGCCTTTGCCACGGATGAGTTCGCCGACTTTGGTTGGCCGGGGGA
CGATGAGACTAAGTTGGCCGAAAAGGAAGAGCTCGATGACCTCCTACGCC
TAGGACTAGAGCTCGGAGATCTGGAGTGCGTGTTCGGCAACACAAATCTG
AACTGCGACACAGCAGATGATGACGCCGAAGAACGCGATTTCGAAAATGC
GGGTGATTGTGGGAGCGGCAAAGGAGGGGGGTGGGGCAAGGAGCCGTACC
TCGCGGGGGGTGCTACCGAGGAGCTGCTGCTAGATGCTGATGATGCACTG
TTCGATTTGCCAGACCTCGATTTGAACTGCCTCGAAGACAAGGGGGACCG
CGGACAGGGAAAGCACGGGTGTGGCAGCGACAGCCCGAAGAACACGCACG
AGGAGGCCGCCACCGAGCCCCCCCCGGACCTTGAGGTCCTCAAGCAAATG
TCCCCCGCGCCCTCCCCACCCGCAGCAACCGCCGCCGCCGCGGCAGCCAC
GGGCTCGGCAACATTAGCGGTCACCCCGGCCCCGCCGTCCTCAGCGGAAC
TCCCCCTGCGGGAGACGCCCGGCGCGCTTCCCGGAGAAAACCTTGCCCTT
GCTTTCGACGCCGCCGGGGACGAACACCGCCCGATCACCATGGTGGACCT
CACCAATGCGCCCGCGCCTGCTCCGGCTCCGACGGCGGACGCGGGAGGAG
TCGCGCCGTCTGGCGTGGAGAGCAACAGCGACGGAAAACCTGACGGCGCC
AACGAACACCGCGAAAGCCGCCCTTGTCGGATGACGGCCACCGGCGACAC
CACCATCATCGATACTCGAGCGGTTGCCTCTGTTCCGGCGAACGCCGTTG
CCGGGGTGCCCACGCGCCTTCTCGACGCGGTCGACCTGTGGGAGAGCGCT
GCAAACGCCAAGAAGAAGAAGGCCGCCGCCGCGGCGGCGACGGCGGCGGC
GGCGTCTCGTGAGCGCGCGAACCGGTCAGCGGCGATGAACAAGCTCAGTA
ACACCGCCAGCAGCGCCAGCAGCAGCAGCAGCAGCAGCAAGAAGAAGAAC
GAGTTCGGCAAGCGGCGCCGAAGCAGCGGCGGTGGCGGCCGCACTGCGCC
GGCTCTGGAGGACCCCGCGCTGCTGGTCGCCGCCCCCGCTACGGCCACCA
GCACCACCACCGGCGGCGGCGGCGGTTCAGCCAGCAAGGTCAAAGGGAAG
GGGAAGGGGAGGGCGACCAAGGGCAAGAAGGTGGACCCCCTGGTGACTCT
TCGAGACGCGAGGGGCATGGCGAGGAAGCCGCTGATCGTGCAGTGGCTCA
AATCGGACGGCTGCGAGAGCGACGAAGAGGCAGAGGCCGCGTTGGGCAAG
GCCGTTGGGAGCCTCTCGGCGATCTCCCGGTACTGGGGGAGCGGGGGCTG
A
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