mRNA_Ecto-sp13_S_contig6095.16761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6095.16761.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE) HSP 1 Score: 329 bits (843), Expect = 6.720e-108 Identity = 173/248 (69.76%), Postives = 180/248 (72.58%), Query Frame = 3
Query: 195 QEGHRRRRWSDPLPPLQGQQQACHSGHVVERPSGRLQPGRTETQKFLRKQLTGCLWNTSSRCMGFVPSEFRRTAVMLRDPRDVVLSEFRMRRDFYQQEEVMAVSVDDFICDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQ-----------------------------ANPMGMIDLAAFMGLACSEDQARKVWKSHQNAVPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTDT 851
Q G R R + + PP C SG P T R+QLTGCLWNTSSRCMGFVPSE RRTAVMLRDPRDVVLSEFRMRRD+Y QEEVMA+SVDDFI DRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQ ANPMGMIDLAAFMGL CSEDQAR VW+SHQNA+PHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTDT
Sbjct: 76 QGGRRHRNFFEDYPP-------CISG-----------PAST------REQLTGCLWNTSSRCMGFVPSESRRTAVMLRDPRDVVLSEFRMRRDYYHQEEVMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTDT 299
BLAST of mRNA_Ecto-sp13_S_contig6095.16761.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE) HSP 1 Score: 199 bits (507), Expect = 1.020e-55 Identity = 100/212 (47.17%), Postives = 145/212 (68.40%), Query Frame = 3
Query: 231 LPPLQGQQQ-AC-HSGHVVERPSGRLQPGRTETQKFLRKQLTGCLWNTSSRCMGFVPS---EFRRTAVMLRDPRDVVLSEFRMRRDFYQQEE-VMAVSVDDFICDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQANPMGMIDLAAFMGLACSEDQARKVWKSHQNAVPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 848
+P ++G+ C + G E G P E + R++L CL+NTS+ C+ ++ S + RR+ V++RDPRDV +SE MR +Y++ + + D F RF+ +VSWTHQR++WHTETV++ SSHV+FY+DL+ + G I +A FMGLACSE+ A +VW++H+N PHGDY+THGLQL TI+WMN TMA LLP +++ WG+TPTD
Sbjct: 238 IPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTSALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTD 449
BLAST of mRNA_Ecto-sp13_S_contig6095.16761.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI) HSP 1 Score: 197 bits (502), Expect = 1.120e-55 Identity = 98/212 (46.23%), Postives = 143/212 (67.45%), Query Frame = 3
Query: 231 LPPLQGQQQ-AC-HSGHVVERPSGRLQPGRTETQKFLRKQLTGCLWNTSSRCMGFVPS---EFRRTAVMLRDPRDVVLSEFRMRRDFYQQEE-VMAVSVDDFICDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQANPMGMIDLAAFMGLACSEDQARKVWKSHQNAVPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 848
+P ++G+ C + G E G P E R++L CL+NTS+ C+ ++PS + RR+ V++RDPRDV +SE MR +Y+ + + D F RF+ +VSWTHQR++WHTETV++ SSHV+FY+DL+ + G I +A FMGL CSE+ A +VW++H+N PHGDY+THGL+ T++WMN TMA LLP +++L WG+TPTD
Sbjct: 172 IPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTSALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTD 383
BLAST of mRNA_Ecto-sp13_S_contig6095.16761.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.160e-50 Identity = 86/175 (49.14%), Postives = 128/175 (73.14%), Query Frame = 3
Query: 336 RKQLTGCLWNTSSRCMGFVPSE---FRRTAVMLRDPRDVVLSEFRMRRD-FYQQEEVMAVSVDDFICDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQANPMGMIDLAAFMGLACSEDQARKVWKSHQNAVPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 848
R++L CLWNT+ RC+ ++ S RR+ V+ RDPRDVV+SE++MR F++ + ++S+++F+ +F+ +VSW HQR++WHT ++ SSHV FYD+LQ +P+G + +A MGL CSEDQA KVWK+H+ A P+G + T L TI++MNATMA LLP +V++ WGLTPT+
Sbjct: 226 RERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTE 399
BLAST of mRNA_Ecto-sp13_S_contig6095.16761.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.570e-46 Identity = 81/175 (46.29%), Postives = 121/175 (69.14%), Query Frame = 3
Query: 336 RKQLTGCLWNTSSRCMGFVPSE---FRRTAVMLRDPRDVVLSEFRMRRDFYQQEE-VMAVSVDDFICDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQANPMGMIDLAAFMGLACSEDQARKVWKSHQNAVPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 848
R +L CL++TS+ C+ +PS RR+ V++RDPR+VV+SE+ MR ++E S+D+FI +F+ +VSW HQR++WHT T++ SSH+ Y++LQ + +G+ID+A FMGL CSE QA KVW ++ P G Y + GL + T+ +MNATMA LLP A++L W +TPT+
Sbjct: 123 RDRLVSCLYDTSASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTE 297
BLAST of mRNA_Ecto-sp13_S_contig6095.16761.1 vs. uniprot
Match: D8LSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW1_ECTSI) HSP 1 Score: 139 bits (349), Expect = 5.930e-36 Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 10 RDGHGISITAKGEPKSGTTWLGRLMPQLALELCGSSTNTWCEMGGLAVYPNEPSPWYEFELLKKGTGEGGGPTLFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFF 336
+ G GIS+ A GEPKSGTTWLGR++P LALELCGS N WC++GG+ + P+ P+ +EFELLK+ G P LFLH+KG +KHVIPGM G P C GGR HR++F
Sbjct: 9 KPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDL-GVPVSCRNGGRLHRDYF 116 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6095.16761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6095.16761.1 >prot_Ecto-sp13_S_contig6095.16761.1 ID=prot_Ecto-sp13_S_contig6095.16761.1|Name=mRNA_Ecto-sp13_S_contig6095.16761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp MGFVPSEFRRTAVMLRDPRDVVLSEFRMRRDFYQQEEVMAVSVDDFICDRback to top mRNA from alignment at Ecto-sp13_S_contig6095:94..4553- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6095.16761.1 ID=mRNA_Ecto-sp13_S_contig6095.16761.1|Name=mRNA_Ecto-sp13_S_contig6095.16761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4460bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6095:94..4553- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6095:94..4553- >mRNA_Ecto-sp13_S_contig6095.16761.1 ID=mRNA_Ecto-sp13_S_contig6095.16761.1|Name=mRNA_Ecto-sp13_S_contig6095.16761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6095:94..4553- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |