mRNA_Ecto-sp13_S_contig60947.16760.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60947.16760.1
Unique NamemRNA_Ecto-sp13_S_contig60947.16760.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: D7FMZ3_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMZ3_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.180e-44
Identity = 84/106 (79.25%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRHVLDVAD 318
            QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSV+EYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQ        +  +C   VD+ + D  D
Sbjct:   41 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVEEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQGAIKYEQDELAACKGLVDQCLGDDPD 146
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A7S2B7F7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7F7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.040e-34
Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRHVLDVAD 318
            QNFPR+RAALSLL YCY+ M D+ AA  MYE+LVKICP VDEYK+Y AQ+LYKAG+YPEATRAAVRVD+PQY QRM+ LQ        +  +C A +D+ + D  D
Sbjct:   37 QNFPRARAALSLLGYCYFMMSDFLAAAKMYEELVKICPDVDEYKMYYAQALYKAGLYPEATRAAVRVDNPQYSQRMLMLQSAIKYEQDELAACKALLDQCLPDDPD 142
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A7S2RIL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIL6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.250e-31
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRHVLD 309
            QNFPRSRAALSLL+Y YY +QD+  A  MYEQL K+ P V EY++Y AQSLYKAG+YPEATRA  +VD PQY QRM  LQ           +C A  D  + D
Sbjct:   48 QNFPRSRAALSLLAYSYYMLQDFPNAVRMYEQLTKLFPEVQEYRIYFAQSLYKAGLYPEATRACFQVDDPQYAQRMAMLQAAIKYEQEDLRACEALADTCLTD 150
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A7S2RJ83_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ83_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.170e-30
Identity = 58/103 (56.31%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRHVLD 309
            QNFPRSRAALSLL +CY+ M D+  A  MYE+L+K+CP V+EYK+Y AQSLYKAG+YPEATRA++RVDSPQY QR+  L+        +  +C + +D  + D
Sbjct:   45 QNFPRSRAALSLLGHCYFMMTDFIQAAKMYEELIKVCPDVEEYKMYYAQSLYKAGLYPEATRASMRVDSPQYTQRITMLKAAVKYQMDELGACKSLLDHCLPD 147
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A2R5GSG9_9STRA (Tetratricopeptide repeat protein 30A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSG9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.010e-29
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRHVLD 309
            QNFPRSRAALSLL+Y YY +QDY  A  MYEQL K+ P V EY++Y AQSLYKAG+YPEATRA  +VD PQY QRMV LQ       +   +C +  D+ + D
Sbjct:   55 QNFPRSRAALSLLAYSYYMLQDYPNAVRMYEQLTKLFPDVQEYRIYFAQSLYKAGLYPEATRACFQVDDPQYTQRMVMLQASIKYEQNDLRACESLADQCLAD 157
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A482ST77_9ARCH (Tetratricopeptide repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST77_9ARCH)

HSP 1 Score: 112 bits (281), Expect = 5.930e-28
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQ 240
            QNFPRSRAALSLL YCYY++ D+ +A   YEQLV ICP V+EYK+Y +QSLYK+G+Y EA RAA+RV+  QY QR++ LQ
Sbjct:   34 QNFPRSRAALSLLGYCYYRLGDFTSAAQCYEQLVSICPDVEEYKLYYSQSLYKSGLYAEAMRAAIRVEGEQYSQRVLMLQ 113
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A7S3H5F2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5F2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.250e-27
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQ 240
            QNFPRSRAALSLL YCYY+  D+ +A   YEQLV ICP V+EYK+Y AQSLYKAG+YP+A RAA+RV+  QY QR++ LQ
Sbjct:   42 QNFPRSRAALSLLGYCYYRTGDFTSAAQSYEQLVGICPDVEEYKLYYAQSLYKAGLYPDAVRAAIRVEGEQYAQRVLMLQ 121
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A812TK29_9DINO (Ttc30a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TK29_9DINO)

HSP 1 Score: 112 bits (279), Expect = 1.540e-26
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRHVLDVAD 318
            Q FPRSRAALSLL +CYY MQD+++A   YEQLV+  P V+EYK+YLAQSL+KAG+Y +AT+A +RVD+ +Y+QR++ L         +  +C   VD+ V D  D
Sbjct:   58 QTFPRSRAALSLLGHCYYHMQDFRSAALTYEQLVRFHPEVEEYKMYLAQSLFKAGLYEDATKACMRVDNEKYEQRLLQLHAAIKYEQDELAACTTLVDQCVPDEPD 163
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A813A192_9DINO (Ttc30a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A192_9DINO)

HSP 1 Score: 108 bits (270), Expect = 1.700e-26
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQ 240
            QNFPRSRAALSLL YCYY +QD++AAT  YEQLV+  P V+EYK+Y AQSLYKAG+Y +A++ A+ VD  ++ QRM  LQ
Sbjct:   40 QNFPRSRAALSLLGYCYYYLQDFRAATQTYEQLVQFHPEVEEYKIYYAQSLYKAGIYADASKVAMSVDGAEHSQRMSMLQ 119
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BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Match: A0A7S1G6M3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6M3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 7.320e-26
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQSLYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRHVLDVAD 318
            QNFPRSRAALSLL YCYY +QD+  A   YEQLVK  P V+EYK+Y AQ+L++AG+Y EATRAA+RVD  QY  +++ LQ        +   C   +D+ V D  D
Sbjct:   59 QNFPRSRAALSLLGYCYYYLQDFGNAAQAYEQLVKFFPEVEEYKIYYAQTLHRAGVYAEATRAALRVDDSQYHHKLLMLQAAIKYEEDELVPCRTLLDQCVPDDPD 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60947.16760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMZ3_ECTSI5.180e-4479.25Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2B7F7_9STRA6.040e-3462.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RIL6_9STRA8.250e-3157.28Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S2RJ83_9STRA8.170e-3056.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GSG9_9STRA3.010e-2958.25Tetratricopeptide repeat protein 30A n=1 Tax=Honda... [more]
A0A482ST77_9ARCH5.930e-2865.00Tetratricopeptide repeat protein n=1 Tax=archaeon ... [more]
A0A7S3H5F2_9STRA1.250e-2767.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A812TK29_9DINO1.540e-2651.89Ttc30a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A813A192_9DINO1.700e-2663.75Ttc30a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S1G6M3_9STRA7.320e-2652.83Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60947contigEcto-sp13_S_contig60947:374..817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score161.0
Seed ortholog evalue3.1e-37
Seed eggNOG ortholog2880.D7FMZ3
Preferred nameTTC30B
Model size318
KEGG koko:K19683
Hectar predicted targeting categoryother localisation
GOsGO:0001736,GO:0001738,GO:0002009,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005929,GO:0005930,GO:0006464,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007164,GO:0007275,GO:0007368,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0009653,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0010970,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0022607,GO:0030030,GO:0030031,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035720,GO:0035735,GO:0036064,GO:0036211,GO:0036372,GO:0042073,GO:0042886,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048729,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0060429,GO:0070735,GO:0070738,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097014,GO:0097542,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG4340@1,KOG4340@2759
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-25_002860.1
Cds size318
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463849.4163074-CDS-Ecto-sp13_S_contig60947:373..5051681463849.4163074-CDS-Ecto-sp13_S_contig60947:373..505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60947 374..505 +
1681463849.433609-CDS-Ecto-sp13_S_contig60947:631..8171681463849.433609-CDS-Ecto-sp13_S_contig60947:631..817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60947 632..817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60947.16760.1prot_Ecto-sp13_S_contig60947.16760.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60947 374..817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60947.16760.1

>prot_Ecto-sp13_S_contig60947.16760.1 ID=prot_Ecto-sp13_S_contig60947.16760.1|Name=mRNA_Ecto-sp13_S_contig60947.16760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
QNFPRSRAALSLLSYCYYQMQDYKAATTMYEQLVKICPSVDEYKVYLAQS
LYKAGMYPEATRAAVRVDSPQYQQRMVALQVRGSAIPSKGFSCPARVDRH
VLDVAD
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mRNA from alignment at Ecto-sp13_S_contig60947:374..817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60947.16760.1 ID=mRNA_Ecto-sp13_S_contig60947.16760.1|Name=mRNA_Ecto-sp13_S_contig60947.16760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60947:374..817+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAATTTTCCTCGCAGTCGGGCAGCACTGTCCCTGTTGAGCTATTGCTA
CTACCAGATGCAAGACTACAAAGCAGCAACCACCATGTACGAACAGCTCG
TGAAGATCTGCCCCAGCGTTGACGAGTATAAGGTGAGTAATACGGGTCTC
AGCTTGCACAAGGGAGACCTGAGAACCCACCGTAGCTGTAACAAACGTTT
GTTTGGCATGCACATTGGTGTGTCAACACGACAGTTCATGACGCTCATGT
GTTGGCAGGTCTATCTCGCCCAGTCACTGTACAAGGCTGGAATGTATCCA
GAGGCAACGCGAGCAGCAGTTCGAGTCGACAGCCCCCAGTATCAGCAGAG
GATGGTCGCCCTTCAGGTGCGAGGAAGCGCAATCCCCTCAAAAGGTTTTT
CTTGTCCCGCGCGAGTAGATAGACATGTCCTGGATGTAGCAGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60947:374..817+

>mRNA_Ecto-sp13_S_contig60947.16760.1 ID=mRNA_Ecto-sp13_S_contig60947.16760.1|Name=mRNA_Ecto-sp13_S_contig60947.16760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60947:374..817+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAATTTTCCTCGCAGTCGGGCAGCACTGTCCCTGTTGAGCTATTGCTA
CTACCAGATGCAAGACTACAAAGCAGCAACCACCATGTACGAACAGCTCG
TGAAGATCTGCCCCAGCGTTGACGAGTATAAGGTCTATCTCGCCCAGTCA
CTGTACAAGGCTGGAATGTATCCAGAGGCAACGCGAGCAGCAGTTCGAGT
CGACAGCCCCCAGTATCAGCAGAGGATGGTCGCCCTTCAGGTGCGAGGAA
GCGCAATCCCCTCAAAAGGTTTTTCTTGTCCCGCGCGAGTAGATAGACAT
GTCCTGGATGTAGCAGAT
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