mRNA_Ecto-sp13_S_contig6090.16755.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6090.16755.1
Unique NamemRNA_Ecto-sp13_S_contig6090.16755.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6090.16755.1 vs. uniprot
Match: D7FR08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR08_ECTSI)

HSP 1 Score: 982 bits (2538), Expect = 0.000e+0
Identity = 556/665 (83.61%), Postives = 563/665 (84.66%), Query Frame = 1 
Query:    4 PQEAKQELTEGLRALDHRGENRLPVADIVTALKRMGIELLLKEREIERALRVFEVDNKYTDGASANGIISGGGGGDRSREVEFSLLIDGVVRAWRAEDLYDKQHSLTGNARLDRKVVRLQREFRSISTTKSTNPKTGAVTYSYKMGKVFRKLDVDGDGTVSSFEFKRGLRKLRIGDYLAERDVRRIFRSFDRDLSGSVDYHEFCDFLLHGAVVSGKPQNTPKGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---YGSEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEGKLTLPNLPNVCGYYYGYDSGSGDGLFEPPPDPIMDAARLAMETFAPSGERQQRVRDYFRGKDRNASGKISERNFHRFLIRSGVENTLGGDGACGLIERMDPRATGYIRYNKFLDKVFEKPAASAPAPVAEEPKKGGDKKTQGEETGPILHRIQEAILQSLSRNRPYHGMFRLSDDTGSGLVTLDVFRHTLNMIGSRLTQDEAQMVADRLAARTDGLVDYEELYRLLLKTPPPQQHLCKRPALTPYAGGGVLSWPPPVVLPSTDFAAGMMSLGQPGGGGGADRGDPVLEEVASRVRHRVLEKTQLWGPSFSLSRQFEFHDPRNRGMVTANDFSSVMEQLGVYLSGQETEHLKRLFDRY 1989
            PQEAKQELTEGLRALDHRGENRLPVADIVTALKRMGIELLLKEREIERALR FEVD+KYTDGAS NGIISGGGGGD SREVEFSLLIDGV RAWRAEDLYDKQHSLTGNARLDRKVVRLQREFRSISTTKSTNPKTG VTYSYKMGKVFRKLDVDGDGTVSS EFKRGLRKLRIGDYLAERDVRRIFRSFDR LSGSVDYHEFCDFLLHGAVVSGKPQNTPKGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    YGSEGD                                  D G           G+YYGYDSGSGDGLFE PPDPIMDAARLAMETFAPSGERQQRVRDYFRGKDRNASGKISERNFHRFLIRSGVENTLGGDGACGLIERMDPRATGYIRYNKFLDKVF+KPA  APAP AEEPK+ GDKK +GEET PILHRIQEAILQSLSRNRPYHGMFRLSDDTGSGLVTLDV RH+LNM+GSRLTQ                                   HLCKRPALTPYAGGGVLSWPPPVVLPSTDFAAGMMSLGQPG GGGADRGDPVLEEVASRVRHRVLEKTQLWGPSFSLSRQFEFHDPRNRGMVT NDFSSVMEQLGVYLSGQETEHLKRLFDRY
Sbjct: 1087 PQEAKQELTEGLRALDHRGENRLPVADIVTALKRMGIELLLKEREIERALRAFEVDSKYTDGASVNGIISGGGGGDTSREVEFSLLIDGVGRAWRAEDLYDKQHSLTGNARLDRKVVRLQREFRSISTTKSTNPKTGVVTYSYKMGKVFRKLDVDGDGTVSSLEFKRGLRKLRIGDYLAERDVRRIFRSFDRGLSGSVDYHEFCDFLLHGAVVSGKPQNTPKGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHRRYGSEGDGGE------------------------------SDSGSYL------GGGFYYGYDSGSGDGLFEAPPDPIMDAARLAMETFAPSGERQQRVRDYFRGKDRNASGKISERNFHRFLIRSGVENTLGGDGACGLIERMDPRATGYIRYNKFLDKVFDKPAVPAPAPAAEEPKQEGDKKAKGEETAPILHRIQEAILQSLSRNRPYHGMFRLSDDTGSGLVTLDVLRHSLNMLGSRLTQ-----------------------------------HLCKRPALTPYAGGGVLSWPPPVVLPSTDFAAGMMSLGQPGRGGGADRGDPVLEEVASRVRHRVLEKTQLWGPSFSLSRQFEFHDPRNRGMVTENDFSSVMEQLGVYLSGQETEHLKRLFDRY 1680
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BLAST of mRNA_Ecto-sp13_S_contig6090.16755.1 vs. uniprot
Match: A0A836CEX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX3_9STRA)

HSP 1 Score: 288 bits (736), Expect = 5.770e-80
Identity = 225/686 (32.80%), Postives = 300/686 (43.73%), Query Frame = 1 
Query:   10 EAKQELTEGLRALDHRGENRLPVADIVTALKRMGIELLLKEREIERALRVFEVDNKYTDGASANGIISGGGGGDRSREVEFSLLIDGVVRAWRA----EDLYDKQHSLTGNARLDRKVVRLQREFRSISTTKSTNPKTGAVTYSYKMGKVFRKLDVDGDGTVSSFEFKRGLRKLRIGDYLAERDVRRIFRSFDRDLSGSVDYHEFCDFLLHGAVVSGKPQNTPKGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGSEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEGKLTLPNLPNVCGYYYGYDSGSGDGLFEPPPDPIMDAARLAMETFAPSGERQQRVRDYFRGKDRNASGKISERNFHRFLIRSGVENTLGGDGACGLIERMDPRATGYIRYNKFLDKVFEKPAASAPAPVAEEPKKGGDKK-TQGEETGPILHRIQEAILQSLSRNRPYHGMFRLSDDTGSGLVTLDVFRHTLNMIGSRLTQDEAQ-----------------MVADRLAARTDGLVDYEELYRLLLKTPPPQQHLCKRPALTPYAGGGVLSWPPPVVLPST----DFAAGMMSLGQPGGGGGADRGDPVLEEVASRVRHRVLEKTQLWGPSFSLSRQFEFHDPRNRGMVTANDFSSVMEQLGVYLSGQETEHLKRLFDRY 1989
            +A+ ++  G  A+D +    LP A ++ +LKR+ I L +    +E+AL V E     T G                 EV++ LL+  ++R W A    +    +    TG+  LDRK+  LQ                           VF K+D DGDG +S+ EF+RGLR+  +G YL +RD+RRIF +FD+D +GSVDY EFCDF+LH   V  K   +                                            S+ D                                 GDE    L  L                             A+L M  FAP+  +Q+RV DY R K+  ++G                                               +VFE+    AP P  +    G  KK +Q  +   ILH++QEAILQS +R RPYHG+F LSD+  SGLV LD  +HTL M+G RL   +                    +   L  R+DG+VD+EELYRLLL+TPPP  HL  RP LT + GG VL+WPPPV         D    + S      G  +  GD V+ +VASRVR RVLEKTQ WGP FSLSRQFEFHDP  +G+V   DF++V+EQLGV LS  E + L++LFDRY
Sbjct:  945 DAEMDVLAGFMAMDQQRVGHLPPAKVMASLKRLEITLDMPPAAVEQALGV-EAFQAKTHG-----------------EVDYKLLVAAIMRGWAALTASKGPKGRGGFTTGSDTLDRKLASLQ---------------------------VFDKMDADGDGHLSAAEFRRGLRQQGLGAYLNDRDMRRIFNAFDQDSNGSVDYAEFCDFILH--TVLNKSATSED------------------------------------------SDSDSATSLGTSSSGFDSDDLF---------------GDEHGGHLSTL-------------------------YTKVAKL-MWVFAPTEAKQKRVWDYMRSKEHGSAG---------------------------------------------AGQVFEELKPKAPKPADD----GASKKPSQALDLPSILHQLQEAILQSNARGRPYHGLFALSDEHRSGLVQLDALKHTLGMLGCRLQDADVLKALKSIPATHRARFTHVQIVKALPERSDGMVDFEELYRLLLRTPPPM-HLMPRPHLTHFGGGTVLTWPPPVTASGGAGHGDMCVDLFS------GSTSHCGDVVMMDVASRVRQRVLEKTQQWGPQFSLSRQFEFHDPHGKGLVATEDFANVLEQLGVGLSRHELQRLEQLFDRY 1444
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BLAST of mRNA_Ecto-sp13_S_contig6090.16755.1 vs. uniprot
Match: A0A7S3UVX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVX7_HETAK)

HSP 1 Score: 109 bits (273), Expect = 2.300e-23
Identity = 62/189 (32.80%), Postives = 98/189 (51.85%), Query Frame = 1 
Query: 1039 METFAPSGERQQRVRDYFRGKDRNASGKISERNFHRFLIRSGVENTLGGDGACGLIERMDPRATGYIRYNKFLDKVFEKPAASAPAPVAEEPKKGGDKKTQGEETGPILHRIQEAILQSLSRNRPYHGMFRLSDDTGSGLVTLDVFRHTLNMIGSRLTQDEAQMVADRLAARTDGLVDYEELYRLLLKT 1605
            ++   P+  R++R R+     D   +G++S+R F  +L R+G+   +       L++ +DPR TG + Y  F+ +V + P              G        +   ++HR+Q A+L+S    + YH +F LSD   +GLV    F H L ++G+ L   EAQ++ DR   RTDG VDYEE +RLLL T
Sbjct:    2 LDELEPAAARRRRFREALLQADPRRTGRVSDRRFRAWLERTGLRRRMKEWELSDLLQLLDPRDTGLVAYKLFVRRVVD-PEEEGAGXXXXAAGVGAQGSLTSLQVSELIHRVQGAVLESAKAGKAYHMVFGLSDPGRTGLVAKADFLHALALLGAALDDAEAQVLLDRGTPRTDGKVDYEEFWRLLLAT 189
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BLAST of mRNA_Ecto-sp13_S_contig6090.16755.1 vs. uniprot
Match: A0A7S3YBD6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBD6_HETAK)

HSP 1 Score: 100 bits (248), Expect = 8.890e-21
Identity = 65/187 (34.76%), Postives = 90/187 (48.13%), Query Frame = 1 
Query:   22 ELTEGLRALDHRGENRLPVADIVTALKRMGIELLLKEREIERALRVFEVDNKYTDGASANGIISGGGGGDRSREVEFSLLIDGVVRAWRAEDLYDKQHSLTGNARLDRKVVRLQREFRSISTTKSTNPKTGAVTYSYKMGKVFRKLDVDGDGTVSSFEFKRGLRKLRIGDYLAERDVRRIFRSFDRD 582
            +L E    LD  G   L    ++ AL+R+ +   L      R LR F                      D    V +  L+  V +AW  E        LTG+A+LD K++RLQR+FR +S  K  +P+TG   YSY + KVFR LD    G VS  EFK  LR++++G  L  +DV RIF  F+R+
Sbjct:    5 DLGEAFGVLDPGGAGALAPDRVLRALQRVHVHPRLSRARFVRGLRFFH---------------------DAEGHVVYGTLVKAVSKAWGIEK-GKADCGLTGHAKLDAKILRLQRDFRDLSIAKEVDPETGKPQYSYHLKKVFRALDRHRSGRVSPHEFKEALRRMKVGRDLGPKDVARIFYVFNRE 169
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BLAST of mRNA_Ecto-sp13_S_contig6090.16755.1 vs. uniprot
Match: A0A7S1U3R8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3R8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.230e-9
Identity = 58/220 (26.36%), Postives = 98/220 (44.55%), Query Frame = 1 
Query:   16 KQELTEGLRALDHRGENRLPVADIVTALKRMGIELLLKEREIERALRVFEVDNKYTDGASANGIISGGGGGDRSREVEFSLLIDGVVRAWRAEDLYDKQ--HSLTGNARLDRKVVRLQREFRS--ISTTKSTNPKTGAVTYSYK---MGKVFRKLDVDGDGTVSSFEFKRGLRKL---RIGDYLAERDVRRIFRSFDRDLSGSVDYHEFCDFLLHGAVVS 645
            ++++    R LD  G+  + +  +  AL+ + +    +    +R L  F       DG          G G+ +   ++      V RAW+   +       ++TGNARLD K++ LQR+ R+  +   + T  +   V        + +VF  LD    G+VS  EF+ GLR+L   R  D+    DVR  F  FD D  G++D  EF  F+    +++
Sbjct:   68 QEKVLSAFRILDPHGKGHVAMGAVPIALRVLEVSYDARSAAGQRGLAFFRKTFSSGDGDDY-------GRGEAAGRFDYERFAAAVGRAWKVRAIKGGTLLGNITGNARLDLKIIHLQRDIRAQALRHQRRTTGRARRVDLQEMENMLMEVFDGLDARRAGSVSPLEFRDGLRQLGVYRAADWTLG-DVREFFDFFDADGDGAIDVTEFVRFMSQNTLLT 279
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BLAST of mRNA_Ecto-sp13_S_contig6090.16755.1 vs. uniprot
Match: A0A7S2R7I4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7I4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.220e-6
Identity = 73/319 (22.88%), Postives = 123/319 (38.56%), Query Frame = 1 
Query: 1018 MDAARLAMETFAPSGERQQRVRDYFRGKDRNASGKISERNFHRFLIRSGVENTLGGDGACGLIERMDPRATGYIRYNKFLDKVFEKPAASAPAPVAEEPKKGGDKKTQGEETGPILHRIQEAILQSLSRNRPYHGMFRLSDDTGSGLVTLDVFRHTLNMIGSRLTQDEAQMVADRLAARTDGLVDYEELYRLLLKTPPPQQHLCKRPALTPYAGGGVLSWPPPVVLPSTDFAAGMMSLGQPGGGGGADRGDPVLEEVASRVRHRVLEKTQLWGPSFSLSR--QFEFHDPRNRGMVTANDFSSVMEQLGVYLSGQETEHL 1968
             DA R  ++   P G   Q +R Y   +  +  G +S R   R L +  +   L       L+ R+DP +TG I      D + +  +   P         G   + QG     IL +I +A L++          F+  D    G VT  +    L+ +G  L+ ++  +V++ L  R+DGLVDY EL +L+L + P       +P      G G   W              + SLG               +    R+   V ++   WG SF L R  + E     +  +V  +     + ++G+ +  ++ E L
Sbjct:  278 FDARRREVK---PQGLDTQALRRYL-ARHGSRKGLVSARRLLRGLDKFTLSAQLQASDVETLLARLDPGSTGTIPLEALTDPLLQ--SCGVPLHGGGGLDCGVALREQGRRVWHILAQIHDAALEAKKEGWTIRRAFQRFDVRRRGTVTPAIAVDALHTLGCDLSDEDWNLVSELLPPRSDGLVDYVELEKLVLSSTP-------KPKPPQSPGDGTQDWRE------------LSSLG--------------WKRFCRRLDSEVSKQRARWGGSFDLHRFLRRETASRLSGRVVPTSALVEALSRMGLAVDSEDLEAL 557
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6090.16755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FR08_ECTSI0.000e+083.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CEX3_9STRA5.770e-8032.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UVX7_HETAK2.300e-2332.80Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3YBD6_HETAK8.890e-2134.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1U3R8_9STRA8.230e-926.36Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2R7I4_9STRA4.220e-622.88Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6090contigEcto-sp13_S_contig6090:9..8232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score981.5
Seed ortholog evalue2e-283
Seed eggNOG ortholog2880.D7FR08
Model size1989
Hectar predicted targeting categoryother localisation
Exons13
EggNOG OGs2CMPY@1,2QR9X@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-09_002990.1
Cds size1989
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6090.16755.1prot_Ecto-sp13_S_contig6090.16755.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6090 9..8232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463848.8220358-CDS-Ecto-sp13_S_contig6090:8..1111681463848.8220358-CDS-Ecto-sp13_S_contig6090:8..111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 9..111 -
1681463848.835026-CDS-Ecto-sp13_S_contig6090:534..6241681463848.835026-CDS-Ecto-sp13_S_contig6090:534..624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 535..624 -
1681463848.846203-CDS-Ecto-sp13_S_contig6090:1437..16161681463848.846203-CDS-Ecto-sp13_S_contig6090:1437..1616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 1438..1616 -
1681463848.8601296-CDS-Ecto-sp13_S_contig6090:2528..26301681463848.8601296-CDS-Ecto-sp13_S_contig6090:2528..2630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 2529..2630 -
1681463848.8742921-CDS-Ecto-sp13_S_contig6090:3051..31741681463848.8742921-CDS-Ecto-sp13_S_contig6090:3051..3174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 3052..3174 -
1681463848.882933-CDS-Ecto-sp13_S_contig6090:3560..36891681463848.882933-CDS-Ecto-sp13_S_contig6090:3560..3689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 3561..3689 -
1681463848.8945072-CDS-Ecto-sp13_S_contig6090:4150..42911681463848.8945072-CDS-Ecto-sp13_S_contig6090:4150..4291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 4151..4291 -
1681463848.9029918-CDS-Ecto-sp13_S_contig6090:4915..50881681463848.9029918-CDS-Ecto-sp13_S_contig6090:4915..5088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 4916..5088 -
1681463848.9133172-CDS-Ecto-sp13_S_contig6090:5364..57561681463848.9133172-CDS-Ecto-sp13_S_contig6090:5364..5756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 5365..5756 -
1681463848.9274573-CDS-Ecto-sp13_S_contig6090:6411..65241681463848.9274573-CDS-Ecto-sp13_S_contig6090:6411..6524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 6412..6524 -
1681463848.9395506-CDS-Ecto-sp13_S_contig6090:6864..69831681463848.9395506-CDS-Ecto-sp13_S_contig6090:6864..6983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 6865..6983 -
1681463848.958233-CDS-Ecto-sp13_S_contig6090:7480..76401681463848.958233-CDS-Ecto-sp13_S_contig6090:7480..7640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 7481..7640 -
1681463848.970804-CDS-Ecto-sp13_S_contig6090:8067..82321681463848.970804-CDS-Ecto-sp13_S_contig6090:8067..8232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6090 8068..8232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6090.16755.1

>prot_Ecto-sp13_S_contig6090.16755.1 ID=prot_Ecto-sp13_S_contig6090.16755.1|Name=mRNA_Ecto-sp13_S_contig6090.16755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=663bp
QPQEAKQELTEGLRALDHRGENRLPVADIVTALKRMGIELLLKEREIERA
LRVFEVDNKYTDGASANGIISGGGGGDRSREVEFSLLIDGVVRAWRAEDL
YDKQHSLTGNARLDRKVVRLQREFRSISTTKSTNPKTGAVTYSYKMGKVF
RKLDVDGDGTVSSFEFKRGLRKLRIGDYLAERDVRRIFRSFDRDLSGSVD
YHEFCDFLLHGAVVSGKPQNTPKGRRHHHHRHRRPHTGGGYGFLSSNGHR
SSCRRRRRRHHRRYGSEGDGGESDSGSYLGGRRSDGWGSSSSSGSSSGGS
SSGDEGKLTLPNLPNVCGYYYGYDSGSGDGLFEPPPDPIMDAARLAMETF
APSGERQQRVRDYFRGKDRNASGKISERNFHRFLIRSGVENTLGGDGACG
LIERMDPRATGYIRYNKFLDKVFEKPAASAPAPVAEEPKKGGDKKTQGEE
TGPILHRIQEAILQSLSRNRPYHGMFRLSDDTGSGLVTLDVFRHTLNMIG
SRLTQDEAQMVADRLAARTDGLVDYEELYRLLLKTPPPQQHLCKRPALTP
YAGGGVLSWPPPVVLPSTDFAAGMMSLGQPGGGGGADRGDPVLEEVASRV
RHRVLEKTQLWGPSFSLSRQFEFHDPRNRGMVTANDFSSVMEQLGVYLSG
QETEHLKRLFDRY
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mRNA from alignment at Ecto-sp13_S_contig6090:9..8232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6090.16755.1 ID=mRNA_Ecto-sp13_S_contig6090.16755.1|Name=mRNA_Ecto-sp13_S_contig6090.16755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8224bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6090:9..8232- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCCCAAGAGGCCAAGCAAGAGCTGACGGAGGGGCTGCGAGCACTGGA
TCACCGCGGAGAGAATCGGTTGCCAGTCGCGGATATCGTTACGGCCCTGA
AGCGAATGGGGATCGAGCTTCTCCTCAAGGAGAGGGAGATTGAGAGGGCG
CTGCGTGTGTTCGAGGTGTGTCTACAGAACAGTGCCATCCAAACATTACG
AGGAGACACTCCGCCCCCTGACGCCCCCTGACCCAACCGCAAAGAAGAGT
CAAAACGAACCGCCAGGAAAAAATGCAACGTCGTGTACATCGAACGTTTA
TTGTTCGTAGGCGAACATGATCAGAACGAATACTGAGATGGTCATCGACA
ATTTACACGGTGGCAATAACGATAACAAATGCAGACGGCGACCAAGTCCA
ATACATCAATAATAATAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACCGTGTCCACTACAGTATAGGACGAAACACTTTGCGAATGTCC
CTTTGAAAAATCGTAGGGACACAGCGTCCTTCTTGGGAAGACCCTAAACC
ACTTGTCTTTTGTGTTTGAACAACCCCTTTTGTTCATCCAAGGTGGACAA
CAAATACACTGATGGAGCCTCGGCCAATGGCATCATCAGTGGTGGCGGCG
GTGGTGACAGAAGCCGTGAGGTGGAGTTCTCGCTGCTGATCGATGGCGTC
GTCAGGGCCTGGAGAGCGGAAGATCTTTACGACAAGCAGCACTCACTCAC
GGGTAAGTGTTCTGGAAATAGTCGCTCACCCAATGTGTTCCTTTCTTCTC
CCCGCCCCGCCGTGCGCACTCGTATTATGTGCCATCACCTCGCTTTTGCT
TTCTCCCTCTCTGCCTCGCTCGCCTTTTGCACACTAATATTATTTCCACA
TACTAGTACTGCCATTCCCAAATCCTAGTTAATCGTGTGTTGTCTCCTAA
CACGTACAGCGGCACTGCTCTCAAGGAACCCCCCCTCGCTTGCGGCGGTT
ATGGAGAAAAAAACACCAAGTACTGTAGCAGTAATAGAGAAAAGTCAGTA
GCAACACTTACGGAAGGGATCATCCCCAAAGCTACCCCTGTTTTTACGTA
TTCTGTCCGTTGCATGTCACAAACGCGACAGAGTTTGCCGGATGCATGTT
CTTTTTGTCGTACCAGACGGTGGCCACAGCAAATGAACAGATAGACCTCC
TTACAAAGAATTCCTCGTCCTCGTATAATCTCTTGCGCTTTTCCGCCAGG
GAACGCTAGGTTGGACAGGAAGGTGGTGCGCCTCCAGAGGGAGTTCCGGT
CGATCTCTACCACAAAATCCACCAACCCCAAGACGGGGGCGGTCACGTAC
TCCTACAAAATGGGGAAGGTGTGGGCGGACATCGACTTCTAATATGCTCG
TAGTTTGTTCTTGGAAAAAGCTGATTTAGGTTGTCTGTCAAATTAGCGCA
CAGTGGACACCTGTCTTAGGAATTCTCCAGTTCTTGACGGTAGCTTCGAA
ATTCGAGCGCGACTCTGTCGTGTCGAATTTTGTTGCGCACGGTTCGTGCG
TATGATGAGCACTGGAAACGCCGAACCGGCTTGCCAGTCCAGCGCTGCAG
GGACTTGGGAAATCACCAAGCCTTCGACACTTCCCCATGGTTAGAGATAG
ATTTGCCGTCGAGGAACACCAAGTCTATGATCGTCTGTGGAAAATGCGCG
AAAAATAGGTTTTCCGAAAGCTTGACGTGGATGGCGACGGGACTGTCAGC
TCTTTTGAGTTCAAGAGGGGTCTGAGGAAGCTCAGGATCGGTGACTACCT
CGCCGAGAGGGACGTGCGAAGGTGCGGCGCGATCGTGGGAGTAAGAACAG
CATCTTCCCGTCGGAATGTACTGAGACCGGCGAGGGTCGTTTCTACCACG
TCGCTATCCCTTGCGTTGTCTTAAAGAAAATGCGCAAGATAGCTCGTGTG
GGTGTTCATCATGGACTGTTACTAATTGTTTGCGAGCCCTTCTGTTCTAC
AGATTGGCAAAGATCGGTGTAACTCGGCCAGAATCTAGACATCATCTGTT
GTTGTGGCAAGAAAGCTCTCCTCGGCAACATCGTCCAGGTGCCATCTATC
AGTAGGCGGGAAGCGTTCGTGATGTCCTCCTAAAATTCGCACAGGAACAA
GCACGCGAAGACGCGATGCAACCCTTGCTGCTCCTGTGATATACGTGGTG
CCTGACGCAGAACCCACCTTAGTAACTGATGTGACAGCCAATCACGCGCG
ATCACGGGGACAAACCATCAACGTGTTTCCATCTTGTCGGTCATGATGTG
CTTCATTCACTAAATAAACAGCGGTTCCATGACCTTGTCTTCCTCTCAGC
CTCTCTCTCACGCCCGAGCTACCCAAAATTAGACGTCGGTTTTCTAACCC
CAAACATGATTTTATGTTGCAAACGCTTCCATCCTGTCATCAACGACCAC
GACGATACCAACTGGAACCCTATCAGGATTTTCCGATCTTTCGACCGCGA
CCTCAGCGGTAGCGTCGACTACCACGAGTTCTGCGACTTCCTCCTCCACG
GCGCCGTTGTTAGCGGCAAGCCCCAGAACACTCCGAAAGGGCGACGACAC
CACCACCACCGCCACCGACGCCCGCACACCGGCGGTGGGTACGGGTTTTT
ATCCTCGAACGGACACAGGAGTTCCTGTCGCAGGCGGCGACGGCGACACC
ACCGCCGATATGGATCGGAGGGCGACGGCGGAGAGAGCGATAGCGGGAGC
TACTTGGGAGGCCGTAGATCGGATGGGTGGGGGAGTAGCAGCAGCAGCGG
CAGCAGCAGCGGGGGTAGCAGCAGTGGAGACGAAGGCAAGCTGACTTTAC
CTAACCTCCCGAACGTATGTTCTGTTGAAGTAGTCTGAGCAGGGGGGCCT
TCCCCTAAGTACGCGTAACTTGGACTCCTCACAAGATCGGTGGGGACATC
GTTCGCTCGTCTCCTAAGGGACCAATGACCAACGGATCCCTCGTCAATAT
CGATCGGGAACGGCATGTGCTCCACCTGCAGCAAGGCGGACACTCTCTAT
TCCTCGCCGCCGTTGTTGTTGATCTCTACGCATCCCTGCCATGTGTGATG
GTGTCCACCGCGGCACCGGGTGTCGATACTCCGACCCTAAATAGGTGGCT
ACTACTACGGTTACGACAGCGGCAGCGGGGACGGGCTGTTCGAGCCCCCA
CCCGACCCGATCATGGACGCGGCGAGACTGGCGATGGAGACCTTTGCACC
ATCGGGGGAGCGACAGCAACGTGTGCGGGACTACTTCCGGGGCAAGGACA
GGAACGCCTCCGGGAAGGTGATAGAGTCACCCAGAAACACAAGGCCATGT
ATCGCACGATATGTTCGCATGTTGAGTTTCTCCTGTGCCACCCATCCCCG
GTTCGCGTCAGGGCTACATCTCTGATTATCTGTTCTGGTCGCTACGTTTT
CTATCTCGCACCCTTTTCAAGTCTCCCTGTTTGCTGAGGACGGTTTCAGC
CGACGTTGTCTTGTGCTATCATGTTTCGTTGCTGAGGGCAAAAAAAACTT
TCGACTTTCAGACATTTGGTGGAACTTGAAACCTGAAACGAGCAGAATTC
GGCGCGACTCACGCCATACTGTGTCTGGAAAGAACCAATATACATCCACT
TCTCCTTCGTTCTTCTCCCTTTCCACCACTCGCTTGCCTCGTCTACTGAG
CATTTGTTGGAGGACAACTTCTACCAGCGCACCGCGTATCGGCTGCATGC
CTTCTAGTACCGTACGCACGGGCCCTTGCCTTACCCCTCGCTCCTACCCG
ACGCTGGCGGCGGCTCTCGCCCTCCCCCCACTGTACTGTTGGTTTCTTTC
CAAAGCACAACAAATCCATCTCTTCCACATATGAGGGTCGGTGATGGAAT
AGCAAATAATTTACAGTGCTTTCTGTCCTCGTGCTCTACAGATATCCGAG
AGGAATTTTCACCGGTTCTTAATTCGTTCCGGGGTTGAGAATACCCTCGG
AGGCGACGGCGCTTGCGGCTTGATAGAAAGGATGGACCCCAGAGCGACCG
GTTACATCCGTTACAACAAGTTCCTCGACAAGGTGATTGGCTCACTGTGG
ACGGGGCAGGGTGTGGGGCTGGGGGCTAGATCAAGGATTGGGTATTGGTC
GTAAGCAGAGCCTTCACTTTTCCAACGGGCGAGGGGTTTGAGCACCGGGT
TAAAACAGCACGCATACGCTCGTGATAGTATGTGGTGAGAAAGAACTTTT
AGAACGGCGTATGTAAGAGGCCTGAAGGGTAGGACAAACGTTGTGAACAG
AGGAAGTGAGAAGTCGGATCTTGCTGTGTGGCCGGGATTCGTTGTGCCGT
AACATTTTTCGTTGACAAGCCGTAGTAGATGCAGAGGACGGAGTGCTTTG
TCTGGGCGACGTTCAATCAGGCCAAAAGCTCTTGAGGGAGCGGGGAGGGG
AGAGGAGCACATGCTCATGACCGGCCAACTCTATTCAGAAACCAGAACGG
GTGTTAATGTTTGCTGATCACGTGCCGACCGATTGATCGGCAGGTGTTTG
AAAAGCCCGCGGCGTCGGCACCGGCACCGGTAGCCGAAGAGCCGAAAAAG
GGCGGAGATAAGAAGACCCAAGGCGAAGAGACGGGCCCCATCCTCCATCG
CATCCAGGAGGCTATACTTCAGGTGTCTGCTGAAACTCTTGTCAGAAGAA
CTAATAGTCTCAGCTCGTGGTAACTGAAAAGCAACAGCAATTCGTCCATC
CTCCAAGGCGGAGGATACGACGGAAACTCGAGGGTCGTTGCGTCCCGCAC
TCATGTATTGCCGTTTCCTTTCAAGGCCGTCGTTTCTGAAACGCTTGTCG
TTCGCGCGTCTTTGATTTTGGTTCAAATACGAAATCAAAGCGGTGCCCGT
TCGTTTCACGCCCCCCCCCGCACCAGAACGGTTGAACGACTGCGGCATGC
ATGCACGGCTATGAGTACACCCCCTCCGATCGAAAATCACAATAAGTGAT
GAAGAATGACTTAGCCAGTTGTAGGTGCTGAACTCCCTTTCCCACCTTCT
TCCGACAGTCCCTGTCGCGAAATCGGCCGTACCACGGGATGTTCCGGCTT
TCCGACGACACTGGCTCCGGTTTGGTGACGCTCGACGTTTTTCGACACAC
CCTCAACATGATCGGATCCAGGCTGACTCAGGTACATTCCTCCAGGCAGC
GTCGGCGTATTGGCATTCACCGCCGTTGATGTCCGGAACGCCAAACGGTG
TGTTTTGGGACGAGGGTGTAAATATTTTTGTTTGAACCACCCTGAGTATC
CCTAAGGTTCCAACATTGCACCGAGTACCTACGGCAGTTCGGTTGCAGCG
TGTCCCATACACCGCTCAATCGTATTGTATCCGCTGTTGGGGAGGTCGAA
GTTTGCTACGTGGGATAAACCAGTGCAGAGAACGTGTGGTAGCCTCGATA
AGCCATTCATTGTAGATTTGGTTTGTGAAGCGATGCCGTGCCCGACATGA
GGGATAAACACACAACTTCTCCTTCGCAGCACGCCTGTCGCTTTCGAAAC
ATCAGCCCAACTTCGGATATTTGCGGTGTTTGACTATGCCCTGAGTATTC
AGGATGAGGCTCAGATGGTGGCCGACCGACTAGCTGCACGAACGGACGGG
CTGGTGGATTACGAAGAGCTGTACCGCCTTTTGCTGAAAACCCCGCCCCC
ACAGGTACAAAATTCGCTCTCGATAACATTGCCACTTCTTCCCATGGCCA
TGGATGCAACGTAACCATCATTCCTCCTTCAACCTCGTGGTACCGATCAT
TGCGTCAACCCGACCTGAAAATACGACGGCGAAAACCATAATGTTTCTGA
TTGGACATATGGCCTTGGTTGACGTTGGCAATCAGTGGGCGTTGGTTTTC
ACAAAGCGACAAACCAATATCAATACACTGAAACAGAGGAAGGGGGGGTT
CGTTTTGTGCGCTACACTTCTCTCCTTTGTCGGCATACTCCCTGACAGGC
CCGTTCTGCTATTGCCCCGCAATAAAATAACCCGACGTGGCTCTCGGTCT
AGACCCCCCACTCACGATTGTCTCTCGATTGAATACTTTTCATACCAAGA
TGTCGGTGTTCTCTTTGCCATAACCCTCCCCCCCCCCTTACACTATCACC
AATGACGCTTTGCCTGCTTCGACCGTTCCTCGCTCGCAATGCTGTCACAC
CCAACTTACTGAAATTCACTACACTGAAACTCAAGGCTATAAAAATACTC
TAGTTGGCTTGTATCCAACGTCACGGGGGTGGGTCCGATTCAGCTCACTG
TTATCCTTCAACCGTCGTAACTCTTGGATTCCAGTGCGGCAATCTGACAA
CATAAAAACAAGACAGGTTGATATCCAGTCAAACGTCATGGACACCAGTG
TTCCACCAACGAAACCAAACCCAAGGCTGTCCATGTGAATCCGAACCAAT
GTCGAAAGAAGCCAATGGAGACCGATTCCATGCCATGCAGATAGCTACTG
TTCACACGCGCAAAAAAAAATGTCATCAGCTTCGAGTACATGCCCCATCG
CAACAAAAGTGACACGGCCAATTGTATGTGTGTGCCTAATGGCAACAACC
ACTACGTGTGTTGGAGCAGCACCTCTGCAAGAGGCCGGCCCTGACGCCGT
ACGCGGGGGGCGGGGTGTTGTCATGGCCTCCCCCCGTGGTGCTCCCGTCA
ACGGACTTCGCTGCTGGAATGATGTCGCTCGGGCAGCCCGGGGGGGGTGG
TGGTGCTGATCGCGGGGACCCCGTGCTCGAAGAGGTTGCTTCGAGGTACC
GTTATGCTTTCAGGGCTTGCGTATCTGGGTAGAAGCAGCGTGGTTGCATC
TGTGAGAGGCTCGAAGCTACGGTGGGCCAGCGACAAGAAGTATATCGGGA
GAGTGGTCAACTGTGCGTAGCGCAACGGGGTAACGGAAAGTGACTTGACG
CCAATGAAAACAAGCGCCCGCCCACATCCACCTCCCTGACAGAACGGAAA
ACAAACAGAAAGAACAGTACCTCGTTGTCGGTGCTCGGAGCGAATTTACT
CACTTTGACGCCGAATCGATAATATAGCTTCTACGATCGCTTACATCGCT
CGGAAAAACTCCAGGTAACATGGGATGAGTGGCTTGCTCCGAGCCTAGTT
GGCATATTTAGACTTCTTGTCTTCAGCATGAATCCGTAAAAACTGTGTTG
AGGAGAGAAGTGGGTAAAACCGTGACATCTTAGAGCAAACGGGTTGAAGA
CTGGACTCGAGCGTACACAACTCTAGGAGGCGCACGCATCTTTATGGTTG
TAGCGGGGGAGGGGGAGTAGACAGATGGGCATAGTTTCATACCTGTGGTG
TGTTTTGAAGACCAGAAGGAAGGGTACAACGTGTATTATTTTGGGTGCCT
TGAGGTCGGACTCACAGCCGGAAACGGGAGTAAAGTCTTGAAGGGAAGGG
CCGTGGGGAAAATATGGGTACCCGCAGTTGCAGTGAGAGTAGTGTGGGCG
TAGAACATGTACGTCAGACCACATTTGCATGCGCTGCGAATGCTCTGTTG
TTGTCTGGCGCTTCTCTTGTTGACTGTGTTACCTCAATTGCTGCCGCGAA
ATCATTAGGGTTAGACATCGGGTCTTGGAGAAGACGCAGCTGTGGGGACC
CAGCTTCAGCCTTTCACGCCAGTTCGAGTTTCACGACCCCCGCAATAGGT
AGAGACCGAATAGAACCGGTTGATGCGTGGTCCAGTGAGAAGACTACAGA
TCGCCTGAACATTGTTGGCGTGCCGCTATGCCAACTTGTCGTGGTTCTTT
TCCATTCGAAACATTTCCACACAGTGCACGACTCACCGCACGTTGATCTA
CAAGCGAGTATCGCCATCAAAGCCAGTGTATCGACTTCCACCAGTGTCGC
CACTCGCCCTTCAGGAAAATATGGCTAAAAGATGTCGTTCAAATTGCCGC
CGAGAGACCTTGCCTGCAAGAGGGAGAGAGAGCCCGGCCCACGCCGTTGA
GTAGGGAATCTTTTTTTGTTTGTGCGGGGGCTGCCTGCTTGTTACCCTAG
CTCAGTAGTACCATTTTGCATGCCCCCTCCACCTCTGCGCTTGCTTGCGG
TTACGAACATCTGAACATTAGGGGCATGGTGACAGCAAATGACTTTTCGT
CGGTGATGGAGCAGCTAGGCGTGTATCTCTCCGGCCAGGAGACCGAACAC
CTGAAACGCCTTTTCGACAGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6090:9..8232-

>mRNA_Ecto-sp13_S_contig6090.16755.1 ID=mRNA_Ecto-sp13_S_contig6090.16755.1|Name=mRNA_Ecto-sp13_S_contig6090.16755.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1989bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6090:9..8232- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCCCAAGAGGCCAAGCAAGAGCTGACGGAGGGGCTGCGAGCACTGGA
TCACCGCGGAGAGAATCGGTTGCCAGTCGCGGATATCGTTACGGCCCTGA
AGCGAATGGGGATCGAGCTTCTCCTCAAGGAGAGGGAGATTGAGAGGGCG
CTGCGTGTGTTCGAGGTGGACAACAAATACACTGATGGAGCCTCGGCCAA
TGGCATCATCAGTGGTGGCGGCGGTGGTGACAGAAGCCGTGAGGTGGAGT
TCTCGCTGCTGATCGATGGCGTCGTCAGGGCCTGGAGAGCGGAAGATCTT
TACGACAAGCAGCACTCACTCACGGGGAACGCTAGGTTGGACAGGAAGGT
GGTGCGCCTCCAGAGGGAGTTCCGGTCGATCTCTACCACAAAATCCACCA
ACCCCAAGACGGGGGCGGTCACGTACTCCTACAAAATGGGGAAGGTTTTC
CGAAAGCTTGACGTGGATGGCGACGGGACTGTCAGCTCTTTTGAGTTCAA
GAGGGGTCTGAGGAAGCTCAGGATCGGTGACTACCTCGCCGAGAGGGACG
TGCGAAGGATTTTCCGATCTTTCGACCGCGACCTCAGCGGTAGCGTCGAC
TACCACGAGTTCTGCGACTTCCTCCTCCACGGCGCCGTTGTTAGCGGCAA
GCCCCAGAACACTCCGAAAGGGCGACGACACCACCACCACCGCCACCGAC
GCCCGCACACCGGCGGTGGGTACGGGTTTTTATCCTCGAACGGACACAGG
AGTTCCTGTCGCAGGCGGCGACGGCGACACCACCGCCGATATGGATCGGA
GGGCGACGGCGGAGAGAGCGATAGCGGGAGCTACTTGGGAGGCCGTAGAT
CGGATGGGTGGGGGAGTAGCAGCAGCAGCGGCAGCAGCAGCGGGGGTAGC
AGCAGTGGAGACGAAGGCAAGCTGACTTTACCTAACCTCCCGAACGTATG
TGGCTACTACTACGGTTACGACAGCGGCAGCGGGGACGGGCTGTTCGAGC
CCCCACCCGACCCGATCATGGACGCGGCGAGACTGGCGATGGAGACCTTT
GCACCATCGGGGGAGCGACAGCAACGTGTGCGGGACTACTTCCGGGGCAA
GGACAGGAACGCCTCCGGGAAGATATCCGAGAGGAATTTTCACCGGTTCT
TAATTCGTTCCGGGGTTGAGAATACCCTCGGAGGCGACGGCGCTTGCGGC
TTGATAGAAAGGATGGACCCCAGAGCGACCGGTTACATCCGTTACAACAA
GTTCCTCGACAAGGTGTTTGAAAAGCCCGCGGCGTCGGCACCGGCACCGG
TAGCCGAAGAGCCGAAAAAGGGCGGAGATAAGAAGACCCAAGGCGAAGAG
ACGGGCCCCATCCTCCATCGCATCCAGGAGGCTATACTTCAGTCCCTGTC
GCGAAATCGGCCGTACCACGGGATGTTCCGGCTTTCCGACGACACTGGCT
CCGGTTTGGTGACGCTCGACGTTTTTCGACACACCCTCAACATGATCGGA
TCCAGGCTGACTCAGGATGAGGCTCAGATGGTGGCCGACCGACTAGCTGC
ACGAACGGACGGGCTGGTGGATTACGAAGAGCTGTACCGCCTTTTGCTGA
AAACCCCGCCCCCACAGCAGCACCTCTGCAAGAGGCCGGCCCTGACGCCG
TACGCGGGGGGCGGGGTGTTGTCATGGCCTCCCCCCGTGGTGCTCCCGTC
AACGGACTTCGCTGCTGGAATGATGTCGCTCGGGCAGCCCGGGGGGGGTG
GTGGTGCTGATCGCGGGGACCCCGTGCTCGAAGAGGTTGCTTCGAGGGTT
AGACATCGGGTCTTGGAGAAGACGCAGCTGTGGGGACCCAGCTTCAGCCT
TTCACGCCAGTTCGAGTTTCACGACCCCCGCAATAGGGGCATGGTGACAG
CAAATGACTTTTCGTCGGTGATGGAGCAGCTAGGCGTGTATCTCTCCGGC
CAGGAGACCGAACACCTGAAACGCCTTTTCGACAGGTAC
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