mRNA_Ecto-sp13_S_contig609.16751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig609.16751.1
Unique Name	mRNA_Ecto-sp13_S_contig609.16751.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig609.16751.1 vs. uniprot
Match: A0A6H5J8Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Z5_9PHAE)

HSP 1 Score: 708 bits (1828), Expect = 6.360e-254
Identity = 385/467 (82.44%), Postives = 405/467 (86.72%), Query Frame = 1

Query:    1 MDRAVRGPAMDLLAELTVLHSHVEKELERVAVAVNDLLEEYHQAAASTSARLQLSKKRILAALARQRILLWEFSTESEPAAVFACSEDSGGVLGSSHQNPIHEPAVGLIAD-KQCTACGPPGNPSSGLSGQSLERNLDEELQWKHDTLVRMKYLLRRKAGDLGATEAERGAIRRDMGKVDAALRDLQECQQKGLLPPQMDAGEDNDSLGAPKPPTNETARAQDNSSNNGRCYAESVLREVELRLPDGLDVLLGRIAEGVRPSRPRRPTTSADAPAPSTPMQPGTDSPCPMVSNHVPEINAGKEVAEAFGQSGRTVGPNNRVGERCSGSPRSLERLPDAEREQARILKASNVSGQGLLNVRRVGVGHRTTMFAGAEQDFVLQQVKPCRQMKDRPKAVVMAARKEVTEGQDDDDRVLSVADAVNHGALNTKGRALSATVAGRNRKKPSQCIGGAFEGGLAGGGVGKENG 1398
            MD  +RGPAMDLLAELTVLHSHVE+ELE VAVAVNDL EE HQAAASTSARLQLSK RILAAL RQRILLWEFSTESEPAAVFA SEDS G LGS HQNPIH+PAVGLIAD KQCTACG PGNPSSGLSGQ   R LDEELQWK DTLVRMK+LLRRKAGDLGATEA RGAIRRDM KVDAALRDLQECQ  GLLPPQMDAGEDNDSLGA +P  NE AR QDNSSNNGRCYAESVLREVELRLPDGLDVLLGRIAEGVRPSR RRPTT+ADAPAPSTPMQPGTDSPCPM S HVPE N  KE  +AFGQSGRTVGPN+RVGERCSGSPRS ERL DAE E+AR L+A+N  GQGLLNV RVG GHRT +FAGAE+D VLQ+VK C ++KD PKAVVMAARK++ E    +  VLSVA AVN GALNTKG ALSATV GRN+KKPS  IGGAF GGLAGGGVGKENG
Sbjct:    1 MDHTIRGPAMDLLAELTVLHSHVERELEGVAVAVNDLFEEDHQAAASTSARLQLSKNRILAALTRQRILLWEFSTESEPAAVFARSEDSDGNLGSRHQNPIHKPAVGLIADNKQCTACGRPGNPSSGLSGQPPARKLDEELQWKRDTLVRMKHLLRRKAGDLGATEAARGAIRRDMAKVDAALRDLQECQLGGLLPPQMDAGEDNDSLGASQPQKNEKAREQDNSSNNGRCYAESVLREVELRLPDGLDVLLGRIAEGVRPSRRRRPTTTADAPAPSTPMQPGTDSPCPMASYHVPENNTRKEAVKAFGQSGRTVGPNDRVGERCSGSPRSSERL-DAESEEARKLRAANFRGQGLLNVGRVGTGHRTKIFAGAEEDLVLQEVKSCGRVKDSPKAVVMAARKDMAEEHTSNRSVLSVAAAVNLGALNTKGLALSATVTGRNKKKPSHRIGGAFTGGLAGGGVGKENG 466

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig609.16751.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig609.16751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5J8Z5_9PHAE	6.360e-254	82.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig609	contig	Ecto-sp13_S_contig609:11773..13625 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	1401
Hectar predicted targeting category	other localisation
Exons	2
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-26_003250.1
Cds size	1401

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463848.6289988-CDS-Ecto-sp13_S_contig609:11772..12506	1681463848.6289988-CDS-Ecto-sp13_S_contig609:11772..12506	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig609 11773..12506 +
1681463848.6398017-CDS-Ecto-sp13_S_contig609:12958..13625	1681463848.6398017-CDS-Ecto-sp13_S_contig609:12958..13625	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig609 12959..13625 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig609.16751.1	prot_Ecto-sp13_S_contig609.16751.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig609 11773..13625 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig609:11773..13625+
coding sequence from alignment at Ecto-sp13_S_contig609:11773..13625+

protein sequence of mRNA_Ecto-sp13_S_contig609.16751.1

>prot_Ecto-sp13_S_contig609.16751.1 ID=prot_Ecto-sp13_S_contig609.16751.1|Name=mRNA_Ecto-sp13_S_contig609.16751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=467bp
MDRAVRGPAMDLLAELTVLHSHVEKELERVAVAVNDLLEEYHQAAASTSA
RLQLSKKRILAALARQRILLWEFSTESEPAAVFACSEDSGGVLGSSHQNP
IHEPAVGLIADKQCTACGPPGNPSSGLSGQSLERNLDEELQWKHDTLVRM
KYLLRRKAGDLGATEAERGAIRRDMGKVDAALRDLQECQQKGLLPPQMDA
GEDNDSLGAPKPPTNETARAQDNSSNNGRCYAESVLREVELRLPDGLDVL
LGRIAEGVRPSRPRRPTTSADAPAPSTPMQPGTDSPCPMVSNHVPEINAG
KEVAEAFGQSGRTVGPNNRVGERCSGSPRSLERLPDAEREQARILKASNV
SGQGLLNVRRVGVGHRTTMFAGAEQDFVLQQVKPCRQMKDRPKAVVMAAR
KEVTEGQDDDDRVLSVADAVNHGALNTKGRALSATVAGRNRKKPSQCIGG
AFEGGLAGGGVGKENGG

mRNA from alignment at Ecto-sp13_S_contig609:11773..13625+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig609.16751.1 ID=mRNA_Ecto-sp13_S_contig609.16751.1|Name=mRNA_Ecto-sp13_S_contig609.16751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig609:11773..13625+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGCGCGGTAAGGGGGCCTGCGATGGATCTGCTCGCCGAGCTGAC
AGTTCTTCACAGCCATGTTGAGAAAGAGCTCGAACGTGTTGCGGTCGCCG
TAAACGACTTGTTGGAGGAGTATCATCAAGCAGCAGCATCAACGTCGGCA
AGACTGCAGCTGTCGAAAAAAAGGATCCTGGCGGCTCTCGCTCGGCAGCG
GATCCTTCTATGGGAGTTCTCGACAGAGAGCGAGCCGGCAGCGGTGTTCG
CTTGCTCGGAAGATAGCGGCGGGGTTCTCGGGAGCAGCCACCAAAATCCA
ATCCACGAACCGGCCGTTGGCTTGATTGCGGATAAACAATGCACCGCGTG
CGGCCCGCCCGGCAACCCCAGCAGCGGTTTGAGCGGCCAATCGCTGGAGA
GAAATTTGGACGAGGAGCTCCAGTGGAAGCACGATACGCTCGTCCGAATG
AAGTATCTTCTACGACGGAAGGCGGGAGACCTGGGAGCGACGGAGGCGGA
GAGAGGGGCGATCAGGCGCGACATGGGCAAGGTCGATGCCGCGCTGCGAG
ATCTCCAGGAATGTCAGCAAAAAGGCCTCCTTCCGCCTCAGATGGATGCC
GGCGAGGACAATGACTCCCTAGGAGCACCAAAGCCCCCGACGAACGAAAC
GGCCCGAGCGCAGGACAACAGTTCCAACAACGGCCGCTGCTACGCCGAAT
CTGTTCTTCGCGAGGTTGAGCTTCGGCTTCCCGAGTGAGTTAGTTGTACT
ATATACAGTGTAGATAGTGCAGAGGCCGCGTGCAGACTACAGTGCGCGCC
AACGAACATTGCGCATAATCTATGAGCCATCATGGTTTCACCTGCGGTAG
AATTGGAGTTCCTCTGTATGTATGTATTACTGCCCTTTCCGTGCTAAAGT
TCTTCGCTCGCCATGGAAAGACTGGTGGATCTCTCGGCTTTCCGGCGCAC
TCCGTCGTGGTGACCAGAGAACATACATCTACCTCCAGCTGCCTCGGGTC
GACAAAGACGCCCTTAGTGGGTTTCAACGTTGCCATCTGTCTTCGCAATA
GAAACCGGTTCGATCTCTCTCTCTCTCTCTCTCCGTTCAGCACCTTCTAA
CATCCGTACTCTTCCTCTTGTTATAGAATTCGAGAAGCCCATGCACTCAG
CCTTCTTACAATCACCCTCCTGTCGCCTCCAAGCAGCGGTCTCGACGTGC
TACTGGGACGCATAGCGGAAGGAGTTCGACCTTCTCGTCCAAGAAGACCG
ACAACTTCAGCCGACGCTCCTGCACCTTCTACACCAATGCAGCCCGGAAC
CGACTCACCCTGTCCCATGGTCTCGAATCACGTGCCAGAGATCAACGCGG
GGAAAGAGGTGGCAGAAGCCTTTGGTCAATCAGGGCGCACGGTAGGCCCG
AACAACAGAGTCGGGGAAAGGTGCAGCGGAAGTCCCAGGAGTTTAGAGAG
GCTGCCAGATGCTGAAAGGGAACAAGCTAGAATACTCAAAGCGTCCAATG
TTAGCGGACAGGGGCTGTTGAACGTTAGAAGAGTAGGCGTTGGCCACCGC
ACAACAATGTTCGCCGGAGCAGAACAAGACTTCGTGCTGCAGCAGGTGAA
GCCGTGCCGACAAATGAAAGACCGGCCGAAAGCGGTCGTGATGGCGGCGA
GGAAGGAGGTGACTGAAGGGCAGGACGACGACGACAGGGTCTTGAGCGTA
GCAGATGCAGTGAACCACGGAGCCTTGAACACGAAAGGCCGGGCTCTTTC
GGCTACCGTTGCGGGTCGGAACAGGAAGAAACCGAGTCAGTGTATCGGCG
GGGCATTCGAGGGAGGGTTGGCTGGTGGTGGTGTCGGCAAGGAGAACGGT
GGT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig609:11773..13625+

>mRNA_Ecto-sp13_S_contig609.16751.1 ID=mRNA_Ecto-sp13_S_contig609.16751.1|Name=mRNA_Ecto-sp13_S_contig609.16751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig609:11773..13625+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGCGCGGTAAGGGGGCCTGCGATGGATCTGCTCGCCGAGCTGAC
AGTTCTTCACAGCCATGTTGAGAAAGAGCTCGAACGTGTTGCGGTCGCCG
TAAACGACTTGTTGGAGGAGTATCATCAAGCAGCAGCATCAACGTCGGCA
AGACTGCAGCTGTCGAAAAAAAGGATCCTGGCGGCTCTCGCTCGGCAGCG
GATCCTTCTATGGGAGTTCTCGACAGAGAGCGAGCCGGCAGCGGTGTTCG
CTTGCTCGGAAGATAGCGGCGGGGTTCTCGGGAGCAGCCACCAAAATCCA
ATCCACGAACCGGCCGTTGGCTTGATTGCGGATAAACAATGCACCGCGTG
CGGCCCGCCCGGCAACCCCAGCAGCGGTTTGAGCGGCCAATCGCTGGAGA
GAAATTTGGACGAGGAGCTCCAGTGGAAGCACGATACGCTCGTCCGAATG
AAGTATCTTCTACGACGGAAGGCGGGAGACCTGGGAGCGACGGAGGCGGA
GAGAGGGGCGATCAGGCGCGACATGGGCAAGGTCGATGCCGCGCTGCGAG
ATCTCCAGGAATGTCAGCAAAAAGGCCTCCTTCCGCCTCAGATGGATGCC
GGCGAGGACAATGACTCCCTAGGAGCACCAAAGCCCCCGACGAACGAAAC
GGCCCGAGCGCAGGACAACAGTTCCAACAACGGCCGCTGCTACGCCGAAT
CTGTTCTTCGCGAGGTTGAGCTTCGGCTTCCCGACGGTCTCGACGTGCTA
CTGGGACGCATAGCGGAAGGAGTTCGACCTTCTCGTCCAAGAAGACCGAC
AACTTCAGCCGACGCTCCTGCACCTTCTACACCAATGCAGCCCGGAACCG
ACTCACCCTGTCCCATGGTCTCGAATCACGTGCCAGAGATCAACGCGGGG
AAAGAGGTGGCAGAAGCCTTTGGTCAATCAGGGCGCACGGTAGGCCCGAA
CAACAGAGTCGGGGAAAGGTGCAGCGGAAGTCCCAGGAGTTTAGAGAGGC
TGCCAGATGCTGAAAGGGAACAAGCTAGAATACTCAAAGCGTCCAATGTT
AGCGGACAGGGGCTGTTGAACGTTAGAAGAGTAGGCGTTGGCCACCGCAC
AACAATGTTCGCCGGAGCAGAACAAGACTTCGTGCTGCAGCAGGTGAAGC
CGTGCCGACAAATGAAAGACCGGCCGAAAGCGGTCGTGATGGCGGCGAGG
AAGGAGGTGACTGAAGGGCAGGACGACGACGACAGGGTCTTGAGCGTAGC
AGATGCAGTGAACCACGGAGCCTTGAACACGAAAGGCCGGGCTCTTTCGG
CTACCGTTGCGGGTCGGAACAGGAAGAAACCGAGTCAGTGTATCGGCGGG
GCATTCGAGGGAGGGTTGGCTGGTGGTGGTGTCGGCAAGGAGAACGGTGG
T