mRNA_Ecto-sp13_S_contig11960.1675.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: A0A6H5KQ86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ86_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.040e-72 Identity = 362/469 (77.19%), Postives = 368/469 (78.46%), Query Frame = 1
Query: 1 MEDPALTAQEPPVPESPPPLPASGETAPFSTFRPPTPANPVPALKEAASAPASMSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------------------------------AGAAEK-QDAXXAQEQQESEGGXXXXGDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEXXXXXXXXXXXXXXGIKAADEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------GAKSAPGGKKAKEAAKTPASPSSGRKRKSIERLGDNYAVTEGKRSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 1278
MEDPALTAQEPP PE+PPP PASGETAPFST PPTPANPVPALKEAASAPASMS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX AGAAE QDA AQ+QQESEGG XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX XXXXXXX E EEXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G KS+ G KAKEAAKTPASPSSGR+RKSIERLGDNYAVTE K+SVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKV SRLDSKKWPVPMVKEAMDLLEV+
Sbjct: 1 MEDPALTAQEPPAPEAPPP-PASGETAPFSTLHPPTPANPVPALKEAASAPASMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAENGQDAAAAQKQQESEGG-------AXXXXXXXXXXXXXXXXXXXKVDDMEXXXXXXXXXXXXXXXKVDDTKVQEVEKVXXXXXXXVQEEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKGVKSSTKGNKAKEAAKTPASPSSGRRRKSIERLGDNYAVTEDKKSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVASRLDSKKWPVPMVKEAMDLLEVN 461
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: D7FZN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN4_ECTSI) HSP 1 Score: 228 bits (580), Expect = 7.940e-67 Identity = 281/433 (64.90%), Postives = 286/433 (66.05%), Query Frame = 1
Query: 1 MEDPALTAQEPPVPESPPPLPASGETAPFSTFRPPTPANPVPALKEAASAPASMSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAEK-QDAXXAQEQQESEGGXXXXGDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEXXXXXXXXXXXXXXGIKAAD------EEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKSAPGGKKAKEAAKTPASPSSGRKRKSIERLGDNYAVTEGKRSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 1278
MEDPALTAQE P P + PP PASGETAPFSTFRPPTPANPVPALK AASAPA+MS AAE QDA X SEGG GDGV XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX EE XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GKKA PASPSSGRKRKSI+RLGDNYA + K+SVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS
Sbjct: 1 MEDPALTAQELPAPGASPPPPASGETAPFSTFRPPTPANPVPALKGAASAPATMS--------------------------------------------------------------------------------AAENGQDAAXXXXXXXSEGGAGEKGDGVENGGKXXXXXXXKVDGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQXXEEEXXHDDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKAXXXXXXPASPSSGRKRKSIDRLGDNYAAAQDKKSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 353
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: K0R6R1_THAOC (DEK C-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6R1_THAOC) HSP 1 Score: 70.1 bits (170), Expect = 3.010e-9 Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 1000 RSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGI--PD---DEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 1278
++ EIA+G+G AL + PNV EK +T NS + LH+++FGG++KKT LK L+ F G+ PD DEA +KV R+ K + +KEA+ L + S
Sbjct: 157 KTTEIAEGSGEALSEHPNVVEKFKNVTYNSEALHDLHHIVFGGRVKKTLLKGNLMAFRGLVYPDGKEDEAKEKVLGRM--YKLKLGPLKEAIGLADFS 252
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: A0A251ST50_HELAN (Putative homeodomain-like, DEK n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251ST50_HELAN) HSP 1 Score: 68.6 bits (166), Expect = 9.640e-9 Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 943 RKRKSIERLGDNYAVTEGKRSVE--IAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGI--PDDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 1278
R+RKS+ERL AV E + E IAKG G+AL+DIPNVA KL + N + LLH +LFG + K ++K+ +L+FSG P++E K+ + K+ + E D+ +++
Sbjct: 158 RERKSVERL---VAVIEKDTTKEFHIAKGRGTALKDIPNVAFKLSKRKLNDDTLKLLHPILFGRRGKALQVKSNILRFSGFVWPENEEKQKLKVKEKLDKYNKEKLLEFCDIFDIT 270
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: UPI001CB90170 (myb-like protein X n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB90170) HSP 1 Score: 65.1 bits (157), Expect = 1.280e-7 Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1
Query: 943 RKRKSIERLGDNYAVTEGK--RSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGI--PDDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 1278
R+RKS+ERL AV + + IAKG G+AL+DIPNVA KL + N I +LHN+L+G + K + K+ +L+FSG ++E K+ R K+ + E DL +++
Sbjct: 211 RERKSVERL---VAVIDKDTVKEFHIAKGRGTALKDIPNVAYKLSKKKLNDDTIKVLHNVLYGRQGKALQHKSNILRFSGFVWTENEEKQKLKIREKLDKFKKEKLLEFCDLFDIT 323
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: A0A565CR92_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CR92_9BRAS) HSP 1 Score: 64.7 bits (156), Expect = 1.680e-7 Identity = 45/126 (35.71%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 916 KTPASPSSGRKRKSIERLGDNYAVTEGKRSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKM-KKTELKAQLLQFSGIP----DDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 1278
+TP S R+RKS+ERL + + ++AKG G+ L+DIPNVA KL R ++ ++ LLH +LFGG+ K +++ +L+FSG +++A DK +LD K + E D+ ++S
Sbjct: 282 RTPFSDRPVRERKSVERL-VALVDKDSSKEFQVAKGKGTPLKDIPNVAYKLSR-KKSDEVLKLLHTILFGGRRGKAAQIRTNILRFSGYTWQGDEEKAKDKAKEKLD--KCNKEKLLEFCDIFDIS 403
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: A0A2P5F893_TREOI (DEK, C-terminal n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5F893_TREOI) HSP 1 Score: 63.2 bits (152), Expect = 5.190e-7 Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 1
Query: 916 KTPASPSSGRKRKSIERLGDNYAVTEGKRSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIPDDEALDKVTSRLDSK--KWPVPMVKEAMDLLEV 1275
+TPAS R+RKS+ERL E + ++IAKG G+ L+DIPNVA KL R + LLH +LFG + K ++K+ + +FSG E DK ++ K K + E DLL++
Sbjct: 183 RTPASYRPVRERKSVERLVATIDK-ESVKEIKIAKGQGTPLKDIPNVAFKLSR-RKTDDTFKLLHTILFGRRGKALQIKSNISRFSGFVWHENEDKQKLKVKEKFDKCNKEKLLEFCDLLDI 302
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: A0A830H4X8_9CHLO (DEK C-terminal domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H4X8_9CHLO) HSP 1 Score: 60.5 bits (145), Expect = 1.760e-6 Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 943 RKRKSIERLGDNYAVTEGKRSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIP----DDEALDKVTSRLDSKKWPVPMVKEAMDLLEVS 1278
R R+ +ER+ Y E + + I +G G+ L DIPNVA KL +++RN + +H LLF K E+K + F G DE +K R ++ V + E MDL ++S
Sbjct: 20 RVRRPVERIDAQYQAPE-RTPLAIPQGRGTPLGDIPNVAFKLTKVSRNDDLAKSVHRLLFRKPAKAMEIKKNVAAFRGYSYEGASDEQAEKAKDRERLDRYTVAGLHELMDLFDIS 134
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: A0A7S2FGG5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FGG5_9CHLO) HSP 1 Score: 58.9 bits (141), Expect = 3.190e-6 Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 1
Query: 943 RKRKSIERLGDNYAVTEGKRSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKMKKTELKAQLLQFSGIP----DDEALDKVTSRLDSKKWPVPMVKEAMDLLEV 1275
R R+ +ER+ Y E + + I +G G+ L DIPNVA KL +++RN + +H LLF K E+K + F G DE +K R ++ V + E MDL ++
Sbjct: 36 RVRRPVERIDAQYQAPE-RTPLAIPQGRGTPLGDIPNVAFKLTKVSRNDDLAKSVHRLLFRKPAKAMEIKKNVAAFRGYSYEGASDEQAEKAKDRERLDRYTVAGLHELMDLFDI 149
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Match: A0A565CQV7_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CQV7_9BRAS) HSP 1 Score: 59.3 bits (142), Expect = 6.600e-6 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 916 KTPASPSSGRKRKSIERLGDNYAVTEGKRSVEIAKGAGSALEDIPNVAEKLGRLTRNSHMIGLLHNLLFGGKM-KKTELKAQLLQFSG 1176
+TP S R+RKS+ERL + + ++AKG G+ L+DIPNVA KL R ++ ++ LLH +LFGG+ K +++ +L+FSG
Sbjct: 282 RTPFSDRPVRERKSVERL-VALVDKDSSKEFQVAKGKGTPLKDIPNVAYKLSR-KKSDEVLKLLHTILFGGRRGKAAQIRTNILRFSG 367 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11960.1675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11960.1675.1 >prot_Ecto-sp13_S_contig11960.1675.1 ID=prot_Ecto-sp13_S_contig11960.1675.1|Name=mRNA_Ecto-sp13_S_contig11960.1675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp MEDPALTAQEPPVPESPPPLPASGETAPFSTFRPPTPANPVPALKEAASAback to top mRNA from alignment at Ecto-sp13_S_contig11960:316..3148- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11960.1675.1 ID=mRNA_Ecto-sp13_S_contig11960.1675.1|Name=mRNA_Ecto-sp13_S_contig11960.1675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2833bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11960:316..3148- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11960:316..3148- >mRNA_Ecto-sp13_S_contig11960.1675.1 ID=mRNA_Ecto-sp13_S_contig11960.1675.1|Name=mRNA_Ecto-sp13_S_contig11960.1675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11960:316..3148- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |