mRNA_Ecto-sp13_S_contig609.16748.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig609.16748.1
Unique NamemRNA_Ecto-sp13_S_contig609.16748.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig609.16748.1 vs. uniprot
Match: A0A6H5JG23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG23_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 4.880e-98
Identity = 227/283 (80.21%), Postives = 233/283 (82.33%), Query Frame = 1 
Query:  127 MRLHLPLLFLLEF----TGSASGLKISPPR--------RTHTSCTPLKATAGRGGSKVPRKERTSAPDGSKDTREAWRWGGFVRPKVYPASKQSKNKSSSSDAVNNKNGNGGIGAAGSDIGTAMAIVSQTTEVVVATIASTGAANALLTPLYRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXDGNITTSPWVAHLRAALPQPVKETYSTVAAVPGQLAKSGEEAAESLSAAKXXXXXXXXXXXXXPDRARGAATQALETARTAREVIMEAPGRVEE 939
            MRLH+ LLFLLEF    TGSASGLKISPPR        RTHTSCTPLKATAGRGGSKVPRKERTSAPDGSKDTREAWRWGGFVRPKVYPASKQ+KN                IG AGSD GTAMAIVSQTTEVVVATIASTGAANALLTPL+RWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXX     T+PWVAHLR  LPQPVK+TYSTVAAVPGQLAKSGE+AA SLSAAK    XXXXXXXXX  RARGA  QALETARTARE I E PGRVEE
Sbjct:    1 MRLHVLLLFLLEFMLEFTGSASGLKISPPRFTAVTTSGRTHTSCTPLKATAGRGGSKVPRKERTSAPDGSKDTREAWRWGGFVRPKVYPASKQNKNXXXXXXXXXXXXXXD-IGTAGSDTGTAMAIVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXTNPWVAHLRVVLPQPVKKTYSTVAAVPGQLAKSGEQAAASLSAAKENLAXXXXXXXXXXXRARGATMQALETARTAREAITEVPGRVEE 282
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BLAST of mRNA_Ecto-sp13_S_contig609.16748.1 vs. uniprot
Match: D7FH24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH24_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.270e-36
Identity = 120/146 (82.19%), Postives = 124/146 (84.93%), Query Frame = 1 
Query:  460 MAIVSQTTEVVVATIASTGAANALLTPLYRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXDGNITT-SPWVAHLRAALPQPVKETYSTVAAVPGQLAKSGEEAAESLSAAKXXXXXXXXXXXXXPDRARGAATQALETAR 894
            MAIVSQTTEVVVATIASTGAANALLTPL+RWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXX       +PWVA LRAALPQPVK+TY TVAAVPGQLAKSGE+AA SLSAAK         XXX P RARGAATQALET R
Sbjct:    1 MAIVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPWVALLRAALPQPVKKTYRTVAAVPGQLAKSGEQAAASLSAAKDNLAAAAEVXXXAPGRARGAATQALETTR 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig609.16748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG23_9PHAE4.880e-9880.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH24_ECTSI1.270e-3682.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig609contigEcto-sp13_S_contig609:471..1418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size939
Hectar predicted targeting categorysignal peptide
Exons2
Cds size813
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463848.384178-CDS-Ecto-sp13_S_contig609:470..12091681463848.384178-CDS-Ecto-sp13_S_contig609:470..1209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig609 471..1209 -
1681463848.3983345-CDS-Ecto-sp13_S_contig609:1218..12921681463848.3983345-CDS-Ecto-sp13_S_contig609:1218..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig609 1219..1292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463848.409092-UTR-Ecto-sp13_S_contig609:1292..14181681463848.409092-UTR-Ecto-sp13_S_contig609:1292..1418Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig609 1293..1418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig609.16748.1prot_Ecto-sp13_S_contig609.16748.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig609 471..1292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig609.16748.1

>prot_Ecto-sp13_S_contig609.16748.1 ID=prot_Ecto-sp13_S_contig609.16748.1|Name=mRNA_Ecto-sp13_S_contig609.16748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
MRLHLPLLFLLEFTGSASGLKISPPRRTHTSCTPLKATAGRGGSKVPRKE
RTSAPDGSKDTREAWRWGGFVRPKVYPASKQSKNKSSSSDAVNNKNGNGG
IGAAGSDIGTAMAIVSQTTEVVVATIASTGAANALLTPLYRWSSSRKRVA
EAVEAAAAAKRREQQQQRALFEQQQQEDGNITTSPWVAHLRAALPQPVKE
TYSTVAAVPGQLAKSGEEAAESLSAAKENLAAVAEAVATAPDRARGAATQ
ALETARTAREVIMEAPGRVEE
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mRNA from alignment at Ecto-sp13_S_contig609:471..1418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig609.16748.1 ID=mRNA_Ecto-sp13_S_contig609.16748.1|Name=mRNA_Ecto-sp13_S_contig609.16748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig609:471..1418- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTGCACTGGAACTGCACTGCCCGACAGGCACACGATGCGCCGGATGTG
CAATGCCTGAAAACGTCTTTGTTGATGGGTATAGAAGGAGTGGATCTCTC
GCCAGCCGTGCCGTATTCTCGCCATCATGCGGCTCCATCTTCCGCTTCTC
TTCCTGCTGGAGTTTACAGGCAGTGCAAGCGGTTTGAAAATCTCACCCCC
GTCCACAAGCAGACGAACACACACATCATGCACGCCGCTGAAGGCAACAG
CGGGCCGTGGTGGTAGCAAGGTTCCGCGAAAAGAGCGTACCAGCGCTCCT
GACGGGAGCAAGGACACCAGGGAGGCTTGGAGGTGGGGCGGCTTCGTCCG
TCCCAAGGTGTATCCTGCTTCCAAGCAGAGCAAGAACAAGTCATCAAGCA
GCGACGCCGTAAACAACAAGAACGGCAACGGCGGTATTGGCGCCGCCGGC
AGCGACATCGGCACCGCCATGGCCATCGTGTCGCAGACCACCGAGGTAGT
GGTAGCCACGATCGCCAGCACTGGCGCGGCGAACGCTTTACTCACGCCGC
TGTACAGGTGGTCCTCCTCGAGGAAGCGCGTCGCGGAGGCGGTGGAGGCG
GCAGCGGCGGCAAAGAGACGCGAACAGCAACAGCAGCGGGCACTCTTCGA
GCAACAACAGCAAGAGGACGGCAACATAACAACTAGCCCCTGGGTAGCAC
ACCTCAGGGCCGCGCTGCCTCAACCCGTCAAGGAGACCTACAGCACGGTC
GCCGCTGTGCCCGGGCAGCTCGCCAAGAGCGGCGAGGAAGCAGCGGAAAG
CCTGTCGGCGGCGAAGGAAAACCTCGCGGCGGTGGCGGAGGCGGTAGCGA
CGGCGCCGGACCGCGCGCGCGGCGCGGCAACGCAGGCCCTAGAGACGGCC
AGAACGGCCCGGGAGGTGATCATGGAGGCGCCCGGCCGCGTGGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig609:471..1418-

>mRNA_Ecto-sp13_S_contig609.16748.1 ID=mRNA_Ecto-sp13_S_contig609.16748.1|Name=mRNA_Ecto-sp13_S_contig609.16748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig609:471..1418- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCTCCATCTTCCGCTTCTCTTCCTGCTGGAGTTTACAGGCAGTGC
AAGCGGTTTGAAAATCTCACCCCCCAGACGAACACACACATCATGCACGC
CGCTGAAGGCAACAGCGGGCCGTGGTGGTAGCAAGGTTCCGCGAAAAGAG
CGTACCAGCGCTCCTGACGGGAGCAAGGACACCAGGGAGGCTTGGAGGTG
GGGCGGCTTCGTCCGTCCCAAGGTGTATCCTGCTTCCAAGCAGAGCAAGA
ACAAGTCATCAAGCAGCGACGCCGTAAACAACAAGAACGGCAACGGCGGT
ATTGGCGCCGCCGGCAGCGACATCGGCACCGCCATGGCCATCGTGTCGCA
GACCACCGAGGTAGTGGTAGCCACGATCGCCAGCACTGGCGCGGCGAACG
CTTTACTCACGCCGCTGTACAGGTGGTCCTCCTCGAGGAAGCGCGTCGCG
GAGGCGGTGGAGGCGGCAGCGGCGGCAAAGAGACGCGAACAGCAACAGCA
GCGGGCACTCTTCGAGCAACAACAGCAAGAGGACGGCAACATAACAACTA
GCCCCTGGGTAGCACACCTCAGGGCCGCGCTGCCTCAACCCGTCAAGGAG
ACCTACAGCACGGTCGCCGCTGTGCCCGGGCAGCTCGCCAAGAGCGGCGA
GGAAGCAGCGGAAAGCCTGTCGGCGGCGAAGGAAAACCTCGCGGCGGTGG
CGGAGGCGGTAGCGACGGCGCCGGACCGCGCGCGCGGCGCGGCAACGCAG
GCCCTAGAGACGGCCAGAACGGCCCGGGAGGTGATCATGGAGGCGCCCGG
CCGCGTGGAGGAG
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