mRNA_Ecto-sp13_S_contig60893.16747.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60893.16747.1
Unique NamemRNA_Ecto-sp13_S_contig60893.16747.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.440e-23
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKASCGLI 162
            K IILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVK +  L 
Sbjct:  295 KAIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKDNRALF 348
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 7.430e-22
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAH 138
            KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAH
Sbjct:  199 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAH 244
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: A0A7S3XJB6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJB6_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 3.450e-17
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKASCGLI 162
            +VI+LEEDLE+APDFFE F A+APLLD+D TL+A SAWNDNGQ  HV     L+
Sbjct:  111 RVIVLEEDLEVAPDFFELFGALAPLLDTDPTLLAASAWNDNGQRGHVAEPAALL 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: D7SZ77_VITVI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Vitis vinifera TaxID=29760 RepID=D7SZ77_VITVI)

HSP 1 Score: 76.3 bits (186), Expect = 7.440e-17
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKASCGLI 162
            +VIILE+D+EIAPDFF+YF A A LLD+D+++MAVS+WNDNGQ   V   C L 
Sbjct:   42 RVIILEDDMEIAPDFFDYFEAAAALLDNDKSIMAVSSWNDNGQKQFVHDPCKLF 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: A0A7S2XX81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX81_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.590e-16
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVK 144
            +VIILEEDLEIAPDFFE+F A+A  LD+DETL+AVSAWNDNG  ++VK
Sbjct:   15 RVIILEEDLEIAPDFFEFFGALASALDTDETLLAVSAWNDNGMESNVK 62
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: A0A2K3P617_TRIPR (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3P617_TRIPR)

HSP 1 Score: 74.7 bits (182), Expect = 5.320e-16
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 141
            +VIILE+D+EIAPDFF+YF AMA LLD D+++MAVS+WNDNGQ   V
Sbjct:   42 RVIILEDDMEIAPDFFDYFEAMATLLDKDKSIMAVSSWNDNGQRQFV 88
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: A0A4Y7II95_PAPSO (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7II95_PAPSO)

HSP 1 Score: 77.8 bits (190), Expect = 8.460e-16
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 141
            +VIILE+D+EIAPDFFEYF A A LLDSD+T+MAVS+WNDNGQ  +V
Sbjct:   94 RVIILEDDMEIAPDFFEYFEAAAALLDSDKTIMAVSSWNDNGQKQYV 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: A0A7J7H3F4_CAMSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7H3F4_CAMSI)

HSP 1 Score: 73.9 bits (180), Expect = 9.910e-16
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKASCGLI 162
            +VIILE+D+EI+PDFF+YF A   LL+SD+++MAVS+WNDNGQ   V+  C  I
Sbjct:   42 RVIILEDDMEISPDFFDYFEAAVALLESDKSIMAVSSWNDNGQKQFVQDPCKFI 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: UPI000E700E10 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like isoform X1 n=3 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E700E10)

HSP 1 Score: 77.8 bits (190), Expect = 1.910e-15
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 141
            +VIILE+D+EIAPDFFEYF A A LLDSD+T+MAVS+WNDNGQ  +V
Sbjct:  204 RVIILEDDMEIAPDFFEYFEAAAALLDSDKTIMAVSSWNDNGQKQYV 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Match: F0YJW4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJW4_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 3.270e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 141
            +VI+LEEDLE+APDFF++F+A+AP LD D TL+A SAWNDNG    V
Sbjct:   22 RVIVLEEDLEVAPDFFDFFAAVAPALDGDATLLAASAWNDNGVRGRV 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60893.16747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXV4_ECTSI8.440e-2388.89Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5L776_9PHAE7.430e-22100.00GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S3XJB6_HETAK3.450e-1766.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7SZ77_VITVI7.440e-1762.96Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A7S2XX81_9STRA1.590e-1675.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2K3P617_TRIPR5.320e-1670.21Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A4Y7II95_PAPSO8.460e-1674.47Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A7J7H3F4_CAMSI9.910e-1659.26Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
UPI000E700E101.910e-1574.47alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
F0YJW4_AURAN3.270e-1565.96Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60893contigEcto-sp13_S_contig60893:55..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score97.4
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D7FXV4
Preferred nameMGAT1
Model size162
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons2
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
Cds size162
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463848.2140958-CDS-Ecto-sp13_S_contig60893:54..881681463848.2140958-CDS-Ecto-sp13_S_contig60893:54..88Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60893 55..88 +
1681463848.234288-CDS-Ecto-sp13_S_contig60893:538..6661681463848.234288-CDS-Ecto-sp13_S_contig60893:538..666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60893 539..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60893.16747.1prot_Ecto-sp13_S_contig60893.16747.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60893 55..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60893.16747.1

>prot_Ecto-sp13_S_contig60893.16747.1 ID=prot_Ecto-sp13_S_contig60893.16747.1|Name=mRNA_Ecto-sp13_S_contig60893.16747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
KVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKAS
CGLI
back to top

mRNA from alignment at Ecto-sp13_S_contig60893:55..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60893.16747.1 ID=mRNA_Ecto-sp13_S_contig60893.16747.1|Name=mRNA_Ecto-sp13_S_contig60893.16747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60893:55..666+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTCATCATTCTCGAGGAAGACCTCGAGATAGGTGAGAGCCACAACAA
CCCAACCCTGGCTGTACCCCTTATAGCTCGAGGACATCATCGTTCACTGC
GATCGTCGTGGGTGGTGGTGTAGGGAAGGGGGAGTAAAAGTCAATCCGGT
AGGATGACCGTGGATCGTAATACTTGCGCATTGTTTTCTTATTTTCACCC
GACCATAAGCGTTGGTTCGTGGCTGGCTGTTGTTTTTTTGACGGCCGTTC
ACTTATGACACGGGGTGACGTTGGAACCGGTTCGTATCTGTCACCCCAAG
ACCCAAGACAGGTTGAACATCAATCGTTGCGGCGGGTCGATAGCTGTCAT
GCCTTAGGAGCGACGTAAGTACAAAATGTATCTTGTGGTAGGTATTTCGT
ACATACCCACGCCCTCCTCCCCAACGTCCTTCCGCCTCCCCTCCCCCTCC
CCCCCACTCCTACCCTCACCGCGGCACATTTCAGCTCCGGACTTTTTCGA
GTACTTTTCGGCGATGGCGCCGCTGCTAGATTCGGACGAGACACTGATGG
CGGTTTCGGCCTGGAACGACAACGGTCAGGCCGCCCACGTGAAGGCGAGT
TGTGGCTTGATT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60893:55..666+

>mRNA_Ecto-sp13_S_contig60893.16747.1 ID=mRNA_Ecto-sp13_S_contig60893.16747.1|Name=mRNA_Ecto-sp13_S_contig60893.16747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60893:55..666+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTCATCATTCTCGAGGAAGACCTCGAGATAGCTCCGGACTTTTTCGA
GTACTTTTCGGCGATGGCGCCGCTGCTAGATTCGGACGAGACACTGATGG
CGGTTTCGGCCTGGAACGACAACGGTCAGGCCGCCCACGTGAAGGCGAGT
TGTGGCTTGATT
back to top