mRNA_Ecto-sp13_S_contig6085.16743.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6085.16743.1
Unique NamemRNA_Ecto-sp13_S_contig6085.16743.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6085.16743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6085contigEcto-sp13_S_contig6085:1849..3460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size818
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_001510.1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.8165278-UTR-Ecto-sp13_S_contig6085:1848..20071681463847.8165278-UTR-Ecto-sp13_S_contig6085:1848..2007Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6085 1849..2007 +
1681463847.8279371-UTR-Ecto-sp13_S_contig6085:2550..27431681463847.8279371-UTR-Ecto-sp13_S_contig6085:2550..2743Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6085 2551..2743 +
1681463847.8381836-UTR-Ecto-sp13_S_contig6085:2994..30021681463847.8381836-UTR-Ecto-sp13_S_contig6085:2994..3002Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6085 2995..3002 +
1681463847.8608575-UTR-Ecto-sp13_S_contig6085:3431..34601681463847.8608575-UTR-Ecto-sp13_S_contig6085:3431..3460Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6085 3432..3460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.8488097-CDS-Ecto-sp13_S_contig6085:3002..34311681463847.8488097-CDS-Ecto-sp13_S_contig6085:3002..3431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6085 3003..3431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6085.16743.1prot_Ecto-sp13_S_contig6085.16743.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6085 3003..3431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6085.16743.1

>prot_Ecto-sp13_S_contig6085.16743.1 ID=prot_Ecto-sp13_S_contig6085.16743.1|Name=mRNA_Ecto-sp13_S_contig6085.16743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MSSSRSANATFLTRRRFLKHDVPRTRHELHRGFATFLSRGGCFLFNWLAW
HVDFISSRYSFSRMQLVLCFIPTRGVCRAFTYQGGLQFKATPTLPLLGEH
ISLCFAAHYFPAASGPVSSCMFDTMHRWPRVKSSCELYSSGV*
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mRNA from alignment at Ecto-sp13_S_contig6085:1849..3460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6085.16743.1 ID=mRNA_Ecto-sp13_S_contig6085.16743.1|Name=mRNA_Ecto-sp13_S_contig6085.16743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6085:1849..3460+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGAACAAGGGCGGGGTCGAGCGAGCGGCGGTGCGAGTGCACCGTTTC
ATGGACGTTGGCGGGCGCAACGCAGCACGGCAAGGCTTGATGATCCAGAT
TGTTTGCACCACCTATGAAACTTTGATCTGCGACGCAAACCCGCCCAGGG
AATGACGAAGTGAGATATATTAACCCCGACATGTTAATACATCCCCACGC
TGATTTTGTAGTAGAGCAAGAAGGCAGGGTTTCATGCATCCTGCAAAGAT
TACCGCACGCAAGACAACACCGTGCACGCACGCACAGAGGGGGGGAGCTA
GAGAGATGTCCGGTTGTGTACCTCTATTTGACCACGAAAGTTCGTTCACC
ACTGCTAGATGATTTGGTTGTTGATTGCCGCAACGAACTTGCCACTAAAG
TGGCAGCACATTGTATTCCTGGGTCGAGACCTCAACGCGGGGGGGCCGCC
GCTCATCCAAGGGCCTGTTTGCTTCTTACGTAGAAGCAGTACGTCGTACG
CTGCATTACATTACCAGACCCGCGGGGAGGCCGTGTAACCCTCGCAGCCC
CCCCCCCCCCCCCCCCCCCCCCCTTGAGGGGCCGCGGCGCTAGATAGGTT
GTGTGTTTTTGAATCATGTTACACCCGGCCAATGCATCATTGAATTCTGT
CGATGAAATATTGCCCACCACATCCGTGCCCCAACACGTCTCTTGTTTGC
AGCCGACCCGGAATCGGACCAGTATTATGCCTGCATCGAACCAATGGGAG
CGAATCGCAACCCCACCATAGGCACGCTCATCAAATTCGCGGATGCACGC
GAGCGAATTAAGGCGTCGAGACTGCGTGGTGTTGGTCGTGCCACCCTGGC
TGTCGCCACCACCCACGAAGGGTACTCCGGGGGGACGCCGAAGAGGTGCG
CTTAACCGCCAATCTAATTCTCAACGGGGCCTAGTCTATCACACATGACA
AACCGCGAGACCCAATGTAAGTATATGCATGCATACCTCACCTTTAGGGC
GGTGTTCGGAAGCACCCGCGAACCTGCAATATTTTGGGTTAATAGGAGGC
ACAAACTACCAACTTCGATACGCCAGCTAATGTTCACAAGCAACACCGTC
CTCCCCCACGCTTGCCGCACGTTCAAATGTTCTCGGAAAAAACCAGGTAG
TTAAATGAGCTCAAGTCGTAGCGCGAATGCAACCTTCCTGACGCGACGCC
GCTTTCTGAAGCACGACGTTCCCAGAACACGACATGAACTCCATCGTGGG
TTCGCGACTTTCCTTTCGCGAGGTGGTTGTTTCCTTTTCAACTGGTTAGC
GTGGCACGTTGATTTCATTTCCTCGCGATATTCTTTTAGCAGAATGCAGT
TGGTTCTGTGCTTCATTCCCACTCGTGGAGTGTGTCGTGCTTTCACGTAT
CAAGGCGGTCTCCAGTTCAAGGCCACACCAACATTGCCTTTACTGGGTGA
ACATATTTCGCTTTGCTTTGCCGCGCATTATTTTCCTGCCGCCTCCGGTC
CAGTTTCAAGTTGCATGTTTGACACAATGCATCGGTGGCCCAGGGTCAAG
TCCTCGTGCGAACTGTATTCGTCAGGTGTGTAGAGAGGGAATGTTTGTTT
GATGTTGTGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6085:1849..3460+

>mRNA_Ecto-sp13_S_contig6085.16743.1 ID=mRNA_Ecto-sp13_S_contig6085.16743.1|Name=mRNA_Ecto-sp13_S_contig6085.16743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6085:1849..3460+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTCAAGTCGTAGCGCGAATGCAACCTTCCTGACGCGACGCCGCTT
TCTGAAGCACGACGTTCCCAGAACACGACATGAACTCCATCGTGGGTTCG
CGACTTTCCTTTCGCGAGGTGGTTGTTTCCTTTTCAACTGGTTAGCGTGG
CACGTTGATTTCATTTCCTCGCGATATTCTTTTAGCAGAATGCAGTTGGT
TCTGTGCTTCATTCCCACTCGTGGAGTGTGTCGTGCTTTCACGTATCAAG
GCGGTCTCCAGTTCAAGGCCACACCAACATTGCCTTTACTGGGTGAACAT
ATTTCGCTTTGCTTTGCCGCGCATTATTTTCCTGCCGCCTCCGGTCCAGT
TTCAAGTTGCATGTTTGACACAATGCATCGGTGGCCCAGGGTCAAGTCCT
CGTGCGAACTGTATTCGTCAGGTGTGTAG
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