prot_Ecto-sp13_S_contig6084.16742.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6084.16742.1
Unique Nameprot_Ecto-sp13_S_contig6084.16742.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length312
Homology
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A6H5LCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCJ5_9PHAE)

HSP 1 Score: 400 bits (1028), Expect = 1.500e-137
Identity = 276/312 (88.46%), Postives = 279/312 (89.42%), Query Frame = 0
Query:    1 MYVPKIHAATAAAAVLAAHEGQARAFHVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGNRAGFFSALLRPTAAALAFCSSSTGWC-SLPRASSLHSHRRRKGATEAVSRQRRGTTAAXXXXXXXLLSMKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGPS 311
            MYVPKIHAATAAAAVLAA EGQARAFHVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       SRGNRAGFF +LLRPTAA LAFCSSSTGW  SLPRA S  SHRRR+G  EAVS       AA       LLSMKASGQGG KGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGE+FVTNFAFYCLVGAVAYAVAETARGKMANQ IPLISAAAEIQLGPS
Sbjct:    1 MYVPKIHAATAAAAVLAAREGQARAFHVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFFCSS-SRGNRAGFFPSLLRPTAATLAFCSSSTGWWRSLPRAPS--SHRRRQGTAEAVSXXXXXXXAATGTT---LLSMKASGQGGEKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQ-IPLISAAAEIQLGPS 305          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: D7G3C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 9.870e-105
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0
Query:  147 MKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGPS 311
            MKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGE+FVTNFAFYCLVGAVAYAVAETARGKMANQ IPLISAAAEIQLGPS
Sbjct:    1 MKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEQFVTNFAFYCLVGAVAYAVAETARGKMANQ-IPLISAAAEIQLGPS 164          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A835YUZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.900e-34
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 0
Query:  163 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            R L    Y+LP+LDG+  GR+V+ AVP +G  V+GVL PALAIW+ VPF+   +F+    + R  + SR +RF++QQAIL+DI  +VLGLL      VAP G +      FY L+ AVAY++    +GK  N+ IP+IS AA+ Q+GP
Sbjct:   76 RLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAPGGADVFATLQFYILISAVAYSLVSNLQGKEPNE-IPIISEAAQRQIGP 222          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A7S0PYH6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYH6_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 3.350e-24
Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = 0
Query:  162 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            +R  GT+ Y+LP+LDG   G  V+  VP  G  V GV+AP +A++ ++PF  +V+FI L +  R    SR +RFN+QQA+L+DI  ++ GL       +  E +   TNF FY  V  V Y+    A+G++ +Q +P++S AA +Q+GP
Sbjct:   45 DRVFGTLPYILPVLDGFGYGIYVYQNVPGAGE-VAGVIAPLVALFQSLPFAGIVLFIGLSLFTRNAGLSRMVRFNIQQALLLDIALIIPGLFSPVTSLLPLELQIIGTNFVFYVCVFTVIYSAWSNAQGELPDQ-VPVLSEAAMMQIGP 191          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A7S4ES88_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT)

HSP 1 Score: 106 bits (265), Expect = 6.810e-24
Identity = 62/148 (41.89%), Postives = 89/148 (60.14%), Query Frame = 0
Query:  163 RALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            R L T+ Y+LP +DG   G  V+  VP +G++  G   P +A ++++PF  LV FI + +  R  + SRF+RFN+QQA+L+DI  +V GL G        E +   TNF FY  V  V YA+   A+GK A  Q+PL+S AA +Q+GP
Sbjct:   75 RVLATLPYVLPAIDGFAYGLYVYQNVPPIGAIA-GAAFPFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLFGPLTKTFPVELQILGTNFIFYAWVLVVGYALFSNAQGK-APDQVPLLSDAASMQIGP 220          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A7S2CM34_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CM34_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 2.700e-23
Identity = 56/149 (37.58%), Postives = 91/149 (61.07%), Query Frame = 0
Query:  162 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            +RA+   VY+LP+LDG   G +++   P++GS  + +L P +  + NVPF  L++FI L    R++  SR++RFN+QQA+L DI  ++  + G A      E +   +NF +Y +V  V Y+  + A+GK  +  +P+IS AA IQ+GP
Sbjct:   35 DRAVSAAVYILPILDGFVFGSNIYATFPLVGSAAYKLL-PLVNTFQNVPFAGLILFIGLSTFTRKEGLSRYVRFNIQQALLTDIALIIPTVFGGAGRMFPLELQAMGSNFVWYAMVTIVCYSWVQIAQGKSPDG-VPVISEAAAIQIGP 181          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A5J4YN77_PORPP (Tic20 family protein Ycf60 n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN77_PORPP)

HSP 1 Score: 104 bits (260), Expect = 5.660e-23
Identity = 73/170 (42.94%), Postives = 102/170 (60.00%), Query Frame = 0
Query:  145 LSMKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSV-RRQDTSRFIRFNVQQAILVDILTVVLGL---LGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            ++M+  G+GGGK   + +R LGT+ YL+P+LD L  G+ VF  VP   ++V G L P L ++   PF+   +F+ L + V R Q+  RFIRFN QQAIL+DILT++  L   LG+ A  V  EG   V N  FY LV  V YA     +G+  ++ IP ISA+   Q+GP
Sbjct:   77 VTMQMWGRGGGKPGPI-DRVLGTLPYLVPLLDSLVYGKYVFEKVPY-STVVLGPLVPLLEVYRGTPFLAFGIFLALFILVVRNQNVPRFIRFNTQQAILLDILTIIPNLFNGLGSRAPAVIVEG---VNNTVFYGLVACVIYATISNLQGEYPDK-IPGISASVSQQIGP 240          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A7S0JI91_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JI91_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 2.420e-22
Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 0
Query:  162 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            +R  GT+ YLLP LDG   G  ++  VP       G +AP +A++ ++PF  LV+FI L    R    SR +RFN+QQA+L+DI  ++ GL     G +  E +   TN  FY  +  V YA    A+GK+ +Q +PL+S AA +Q+GP
Sbjct:   56 DRLFGTLPYLLPSLDGFGYGAYIYQNVPGAAQAA-GAVAPFVALFQSLPFAGLVLFIGLSFFTRNAGLSRLVRFNIQQALLLDIALIIPGLFSPVTGLLPAELQIIGTNLVFYVCLFTVLYATWCNAQGKLPDQ-VPLLSEAALMQIGP 202          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A7S2ZG79_9RHOD (Tic20 family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD)

HSP 1 Score: 100 bits (249), Expect = 9.590e-22
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 0
Query:  121 GATEAVSRQRRGTTAAXXXXXXXLLSMKASGQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFI-ILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            GA   +   RR    A        +SM  +    GK E  ++R    + Y LP+LD L  G  +F   P+   LV   LAP  AI+  +PF+ L +F  +  + VR  + +RFIR+N QQAI++D++ ++  L G AA  +     E   N  FY ++ AV YAV E  RG++ N+ IPL+S + + Q+GP
Sbjct:   19 GAVRGLCDSRRVGNGAHVVHRSVKVSMSYNS---GKPEG-KDRFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVRNTNINRFIRYNAQQAIMLDLILIIPALFGGAAAQMPRFIAETGANTVFYSILAAVGYAVIENIRGELPNK-IPLVSESVDSQIGP 204          
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Match: A0A7S0I0B2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I0B2_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.180e-20
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 0
Query:  162 NRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLISAAAEIQLGP 310
            +RA    VYL P+ DG+  G+ +F +VP+ G+L   +L  A A +D++PF  L+ FI L    R    SRF+RFN+QQAIL+DI  ++    G     V  E ++ ++N  FY +V A+ Y+    A+GK  +Q +P++S AA   +GP
Sbjct:   81 DRAFAAAVYLFPITDGIFFGKFLFTSVPVFGALCLPILQ-ASAAFDSIPFSGLIFFIGLSSMSRNPGLSRFLRFNLQQAILLDIAFIIPNFFGGVGQMVPIEVQQVLSNTVFYSMVLAIGYSWFSIAQGKTPDQ-VPVVSEAANQAIGP 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6084.16742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCJ5_9PHAE1.500e-13788.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C5_ECTSI9.870e-10598.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUZ7_9STRA2.900e-3446.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0PYH6_9EUKA3.350e-2439.60Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4ES88_CHRCT6.810e-2441.89Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2CM34_9EUKA2.700e-2337.58Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A5J4YN77_PORPP5.660e-2342.94Tic20 family protein Ycf60 n=2 Tax=Porphyridium pu... [more]
A0A7S0JI91_9EUKA2.420e-2239.60Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2ZG79_9RHOD9.590e-2235.08Tic20 family protein Ycf60 n=2 Tax=Rhodosorus mari... [more]
A0A7S0I0B2_9EUKA1.180e-2038.26Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 163..304
e-value: 2.0E-11
score: 44.0
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510FAMILY NOT NAMEDcoord: 67..308
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 67..308
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 286..311
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..197
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 241..261
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 262..266
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 221..240
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 267..285
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 198..220
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableTMHMMTMhelixcoord: 198..220
NoneNo IPR availableTMHMMTMhelixcoord: 267..285
NoneNo IPR availableTMHMMTMhelixcoord: 240..262

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6084contigEcto-sp13_S_contig6084:2166..6120 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6084.16742.1mRNA_Ecto-sp13_S_contig6084.16742.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6084 2166..6399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6084.16742.1 ID=prot_Ecto-sp13_S_contig6084.16742.1|Name=mRNA_Ecto-sp13_S_contig6084.16742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp
MYVPKIHAATAAAAVLAAHEGQARAFHVNNNNHASSSSRLLLRGVPHSSA
AVHSSSSNRMTVATTAAALPYCCSSSRGNRAGFFSALLRPTAAALAFCSS
STGWCSLPRASSLHSHRRRKGATEAVSRQRRGTTAATATTATTLLSMKAS
GQGGGKGESVRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLA
PALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVL
GLLGTAAGYVAPEGEEFVTNFAFYCLVGAVAYAVAETARGKMANQQIPLI
SAAAEIQLGPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20