prot_Ecto-sp13_S_contig6083.16741.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6083.16741.1
Unique Nameprot_Ecto-sp13_S_contig6083.16741.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length69
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6083.16741.1 vs. uniprot
Match: D8LT76_ECTSI (Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT76_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 7.160e-40
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0 
Query:    1 MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLRAYNTAVTGDDGVERDTAINEAADLLG 67
            MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLR YNTAVTGDDGVERDTAINEAAD+LG
Sbjct:    1 MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLRGYNTAVTGDDGVERDTAINEAADMLG 67
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6083.16741.1 vs. uniprot
Match: A0A835ZBQ3_9STRA (Profilin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.450e-12
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0 
Query:    4 WNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLR-AYNTAVTGDDGVERDTAINEAADLL 66
            W+AY+ TQL A+G +CQA I GKADMQ YA  G F L  +Y   VT +DG E    I+E +++L
Sbjct:    3 WDAYISTQLTASGVICQAAILGKADMQIYAQEGGFALYPSYQANVTKEDGTEGVETIDEVSEML 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6083.16741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT76_ECTSI7.160e-4097.01Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT7... [more]
A0A835ZBQ3_9STRA6.450e-1250.00Profilin n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.30coord: 1..68
e-value: 4.8E-15
score: 57.7
IPR005455ProfilinPFAMPF00235Profilincoord: 3..42
e-value: 3.8E-9
score: 36.9
IPR027310Profilin conserved sitePROSITEPS00414PROFILINcoord: 1..9
IPR036140Profilin superfamilySUPERFAMILY55770Profilin (actin-binding protein)coord: 2..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6083contigEcto-sp13_S_contig6083:5426..8531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6083.16741.1mRNA_Ecto-sp13_S_contig6083.16741.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6083 5426..8531 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6083.16741.1 ID=prot_Ecto-sp13_S_contig6083.16741.1|Name=mRNA_Ecto-sp13_S_contig6083.16741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLRAYNTAVTGD
DGVERDTAINEAADLLGE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005455PFN
IPR027310Profilin_CS
IPR036140PFN_sf