mRNA_Ecto-sp13_S_contig6083.16741.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6083.16741.1
Unique NamemRNA_Ecto-sp13_S_contig6083.16741.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6083.16741.1 vs. uniprot
Match: D8LT76_ECTSI (Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT76_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 7.160e-40
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLRAYNTAVTGDDGVERDTAINEAADLLG 201
            MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLR YNTAVTGDDGVERDTAINEAAD+LG
Sbjct:    1 MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLRGYNTAVTGDDGVERDTAINEAADMLG 67
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BLAST of mRNA_Ecto-sp13_S_contig6083.16741.1 vs. uniprot
Match: A0A835ZBQ3_9STRA (Profilin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.450e-12
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   10 WNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLR-AYNTAVTGDDGVERDTAINEAADLL 198
            W+AY+ TQL A+G +CQA I GKADMQ YA  G F L  +Y   VT +DG E    I+E +++L
Sbjct:    3 WDAYISTQLTASGVICQAAILGKADMQIYAQEGGFALYPSYQANVTKEDGTEGVETIDEVSEML 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6083.16741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT76_ECTSI7.160e-4097.01Profilin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT7... [more]
A0A835ZBQ3_9STRA6.450e-1250.00Profilin n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6083contigEcto-sp13_S_contig6083:5426..8531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score138.3
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D8LT76
Model size207
KEGG koko:K05759
KEGG Pathwayko04013,ko04015,ko04810,ko05131,ko05132,map04013,map04015,map04810,map05131,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Profilin
EggNOG OGs2EA0B@1,2SGA6@2759
Ec32 ortholog descriptionprofilin
Ec32 orthologEc-12_005550.1
Cds size207
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.7009172-CDS-Ecto-sp13_S_contig6083:5425..55421681463847.7009172-CDS-Ecto-sp13_S_contig6083:5425..5542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6083 5426..5542 +
1681463847.7161672-CDS-Ecto-sp13_S_contig6083:8441..85311681463847.7161672-CDS-Ecto-sp13_S_contig6083:8441..8531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6083 8442..8531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6083.16741.1prot_Ecto-sp13_S_contig6083.16741.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6083 5426..8531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6083.16741.1

>prot_Ecto-sp13_S_contig6083.16741.1 ID=prot_Ecto-sp13_S_contig6083.16741.1|Name=mRNA_Ecto-sp13_S_contig6083.16741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MSGWNAYVDTQLVATGAVCQAGIFGKADMQCYANAGDFQLRAYNTAVTGD
DGVERDTAINEAADLLGE*
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mRNA from alignment at Ecto-sp13_S_contig6083:5426..8531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6083.16741.1 ID=mRNA_Ecto-sp13_S_contig6083.16741.1|Name=mRNA_Ecto-sp13_S_contig6083.16741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3106bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6083:5426..8531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGCTGGAACGCTTACGTCGACACTCAGCTGGTGGCCACGGGGGC
CGTGTGCCAGGCCGGTATCTTCGGCAAGGCTGACATGCAGTGCTACGCCA
ACGCGGGCGATTTCCAGGTCTGTGCTTTTTGTTTCGGTTTCCGAAACGAC
TTGCTTTCAGTAAGCCCCTTGATTTCATCCGAATTTTGCCTCAAGAGGCA
CCTGTAACTTTTTCCCAGCGTGCCCGTGGTGGTGTGAAAGAGGAGCAACA
GCATTGCAATAAGTGCTGCTGCACCGCTGCAACTTCTTTGCCGACAAGCG
TGCAATCCTGATGGTGCACGCTCACGCGGCCGGCCGGGGGCGCGGCAGGC
TTGCAGTGCTGTTGTGGGTTTGTGCGACGGTCCACAAAGACATATGGTCC
TGTTGGTGATGCGGCGGAACAACCCAGTACTCCTAGCTCTGCGCCATGCG
AATTCTGGCTGCCCGCCGTACCACGCGAAGACGGAAGAGGTCTCCCGCCC
TGGCGTAGCTCAGTTACGATCGAGGGGAGGTCGATAACGCGGCAATGCAT
TGGGCTTGTGTTCAGAAAATACCGAGCGAAAGAGGGAGACATGTTCCGCA
CACACCGAAGAAAAAATGTGAAGGTTCGACGTTCTCAAAATCGTTGTTCA
ACCCGCCCGCCGCGCGTCTCCCATCTTGAGACGGCTGCCAGCCCCCCCCC
TCGCGGCTGATGCCGCCCGGGGTGTGTAGGAGTAGCCACGGCGCCTTGAA
ACAACAACCAGACGCTATTGTGGCAGGTATGCAATGGCTCGCGACGCCTA
TGTGTGTGTGCTATTTTTGCGTCCTTTGTTCAAACCGATTTTCGCCTTTT
TGGAGACCGTTGTCCCCCTACAGTATACATGTAGTCTACCGCTGTACAGC
CACGCAAAAAGGATATTTGAAGGTCCGACGTGGTCATGATCGTGACGAAC
GGACTTTGGGGTAAACACTTGTCAAGCGAGAGCCAAGAGGCCAGAAAAAG
CACACCCCTCAAACGCACACGCCTCCCCACTTTTTGTGCTCTCCATGCGG
AGTACTCCAGAGGAGGTGGCGCGGGGAGGGGAGTCTTGCGTTGAGCTGCT
GTTGAACCGCGTTGCAGCCGCACCCATCTCCGGATGTACTTTCATCTCTT
GCGTCTAAAGATGATTTTTGGAGAGAGCCACAGGTTGTTGCGCTCGACAA
GAATTGGAAGGCGGTGCCGCAGAGGGAGGTGATTTCTGTGTGACCCCGCG
CGGCGCTGTGTTAGTCCTCGATAAAAAGAAGACAACATCTTACCTAGAGG
GAAGGAAGGGCACACATGCTTGAGGGGTTCTACTGAGCCAAGTTGTGGGA
CTTGGGGATACTTTGGAATCGTTGGAAGCACACCTCCTGATTCTCAAGAC
TTGTCATCGGTTGCAATCCCTTGATGCCTTCTATAACAGCAGCATACAGC
TCCCGTCCGAGTCCTCGGAATCAAACATGGTCGTGCAGATCACGCACACT
TGGTATCTTCGCACATCGAACTTACTTCCAGCGTGCCCTCGGGGGAATAG
ATTCCGCACAGCAGTATGTCGGAAGATAAACACCTGAAGCACTCGGGGGA
ATAGGGAGCCTGCAGTCAGGGAATAGAATTCCCATCCTCGGCTATATGCC
GAACGCCACAGAGCGCTAGACAACTTCAGCAAAATTCCAATCAAACTTCA
GGGCAAGTGATGAAGGACGTGCATGCCGTTTAGTCTGTCATCAAGTAGGC
AGATACGTGGGTGGCAGACGCCCCTGGCAGCCTGTTTTGCCTTGCGATGT
TGCGTTTGTTGCACCTCAGCGGTTTTTTCTCCTCATCAAACCCGGTATGC
TCATGCGACATTCTCGCAATGACTTGCAGCAACAGCAGCAGAGGCAGCAG
CAGCTTCGTGTCACGCACATGTTGCTGCGGAGGGGATACGGATTGACGGG
ACCACAGAAATTTTCCGGCAGCGGAAGCTAGCCTGACTAATTTTACCCTC
AACTCGCCCACGCGGAAGACGGTACCTCTATGTGTTAGCCGCTCTACAAG
GACACACCACAAGCCCGCGTTTCGATAACTAAAATCCACGAGGCACGCAA
GCGATATTGCTGTACCTCCCATCGAAAGAAACGTTGTAGGCGTGTTTTAC
CTCGGCCTGTAGACTAGGTATTACAGCCAGGGGGGGGGGGGGGGGGGGGG
GGGGGGCCGAAAAAATTGCGGGGGGGAAACATGAAAAAAAAATTTTTTGG
TGTGTGCACCTTGTGGGGGTGGGACATCAACATGAACAAAGAATTTGTTG
GTGTGTGCACCTTGATGGTGTGGGACATCCGATTCATGGGGTTGGTCTTG
GGTAGACATCAGCAAATCAGCTGCATTCACGACTACTCCCGTAGTCTTCG
TGGTGGTGGTGGTGTGGCCTTAGCAGTGTCGGAAGGAATGTCGTTCGTTG
TTGGCAAGGTCCTCGCGGGTTTCGCATGTTGTGCCCTCAACCTGGACTTG
CAAACAACGGGCACCGTGTCCGAACCCCGGCTGGGCTACGGTGAAGTTGC
GTGTGCAGCCCAAACACCGTTTGTAGTGCCTATAGAACATATCTACGCGA
AGAGTGGGATGGATATTTCGATATTGCTCTCACCCACTCTCTCGTGCTCA
CTGACTCTTTTCTATTCATGTGTATCACTCGCCATTTACCTCACTGTTCT
CTCGAGCCGCTCTAAGGAAAGAACCAAGGTAGACTACACGCGACGCGCTT
CCTCTCACCGAACCCCACCGCATTCAATCAATCTCCTCGGCGCAAGCATG
CCTGTTGCCTGTTGTCAAAAGAGTATGGGGTTCAACAAACGGCAGCATCT
AACAGCTTAGATTCTGAATGCCGCATGTGAGGGGCGCTTCTGTTCGCGCT
TTTCTGAAACCACCAAAACGAAATTTAGGCATGCAATCGACGAACCGACT
AAATATCTACGAAGCAACGTTTGAATTTACTTATGTACTTCTACGTGTGT
GTTGTTTCGGTCGCAGCTCCGAGCGTACAACACGGCCGTCACCGGCGACG
ACGGAGTGGAGAGGGACACCGCCATCAACGAGGCCGCCGATTTGCTCGGT
GAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6083:5426..8531+

>mRNA_Ecto-sp13_S_contig6083.16741.1 ID=mRNA_Ecto-sp13_S_contig6083.16741.1|Name=mRNA_Ecto-sp13_S_contig6083.16741.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6083:5426..8531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGCTGGAACGCTTACGTCGACACTCAGCTGGTGGCCACGGGGGC
CGTGTGCCAGGCCGGTATCTTCGGCAAGGCTGACATGCAGTGCTACGCCA
ACGCGGGCGATTTCCAGCTCCGAGCGTACAACACGGCCGTCACCGGCGAC
GACGGAGTGGAGAGGGACACCGCCATCAACGAGGCCGCCGATTTGCTCGG
TGAGTAG
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