prot_Ecto-sp13_S_contig6081.16739.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6081.16739.1
Unique Nameprot_Ecto-sp13_S_contig6081.16739.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length332
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6081.16739.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 631 bits (1627), Expect = 5.480e-228
Identity = 314/332 (94.58%), Postives = 318/332 (95.78%), Query Frame = 0 
Query:    1 MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFHSGGAALRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAVRWVTGAWITGALGAVLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVXXXXXXXXXIVECVEGGTWNMGWSIRRGAGAFVGGSGSSS-IGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 331
            MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFH GGA LRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGA+RWV+GAWITGALGA+LMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIV         IVECVEGGTWNMGWSIR GAGAFVGG GSSS +GGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL
Sbjct:    1 MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFHGGGAELRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAGAFVGGGGSSSGVGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332
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BLAST of mRNA_Ecto-sp13_S_contig6081.16739.1 vs. uniprot
Match: A0A835YPN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.360e-18
Identity = 74/215 (34.42%), Postives = 106/215 (49.30%), Query Frame = 0 
Query:    2 IDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLY-MTGFSREESFHSGGAALRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAVRWVTGAWITGALGAVLMYAAASVP--GEEGASFSPQGVTHLVLTTSAACGILGQAVCTA----WALRKARLVFVVSDGDLVAYKRKLW 209
            +D DYAELL R PP      ++   RAL     +L + T  +   L+ +TG  +E      G  +R+PT+++LG    P  + F  G+ L A+V + L W V+LAH QRL+ARTG+ +YD     A R    A   G   + L + A SVP         + Q   H+   T AA GI   A   A      L  AR VF++S+ D+  ++ KLW
Sbjct:    1 MDDDYAELLARPPPFAGTTHFSVRLRALPVFSAVLALSTVLVAGVLFGVTGKIKELP----GTGVRLPTVSRLGAYP-PGCYVFAGGMHLGAIVFMLLVWAVRLAHTQRLRARTGLEKYDSRGAAARRCADAACAVGTAFSALWFLAGSVPPLARYDGVAAAQDRAHV---TVAALGIAALAAYAAIVCFGVLLWARGVFLLSETDVFWFRWKLW 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6081.16739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIE4_ECTSI5.480e-22894.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPN4_9STRA2.360e-1834.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 166..187
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 106..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..228
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 188..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 229..331
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..105
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 147..165
NoneNo IPR availableTMHMMTMhelixcoord: 165..187
NoneNo IPR availableTMHMMTMhelixcoord: 125..147
NoneNo IPR availableTMHMMTMhelixcoord: 82..104
NoneNo IPR availableTMHMMTMhelixcoord: 33..52
NoneNo IPR availableTMHMMTMhelixcoord: 208..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6081contigEcto-sp13_S_contig6081:1064..4238 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6081.16739.1mRNA_Ecto-sp13_S_contig6081.16739.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6081 1064..5263 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6081.16739.1 ID=prot_Ecto-sp13_S_contig6081.16739.1|Name=mRNA_Ecto-sp13_S_contig6081.16739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp
MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMT
GFSREESFHSGGAALRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFW
CVKLAHHQRLQARTGVARYDIEAEGAVRWVTGAWITGALGAVLMYAAASV
PGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGD
LVAYKRKLWLASTAAIVAVVAVLSVLIVECVEGGTWNMGWSIRRGAGAFV
GGSGSSSIGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEY
LLLAVEAGFCMALRHDLAPATGGVGVESFVL*
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