mRNA_Ecto-sp13_S_contig6081.16739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6081.16739.1
Unique NamemRNA_Ecto-sp13_S_contig6081.16739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6081.16739.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 631 bits (1627), Expect = 2.200e-222
Identity = 314/332 (94.58%), Postives = 318/332 (95.78%), Query Frame = 1 
Query:    1 MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFHSGGAALRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAVRWVTGAWITGALGAVLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVXXXXXXXXXIVECVEGGTWNMGWSIRRGAGAFVGGSGSSS-IGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 993
            MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFH GGA LRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGA+RWV+GAWITGALGA+LMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIV         IVECVEGGTWNMGWSIR GAGAFVGG GSSS +GGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL
Sbjct:    1 MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMTGFSREESFHGGGAELRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGDLVAYKRKLWLASTAAIVAAVAVLSVLIVECVEGGTWNMGWSIRGGAGAFVGGGGSSSGVGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 332
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BLAST of mRNA_Ecto-sp13_S_contig6081.16739.1 vs. uniprot
Match: A0A835YPN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.960e-24
Identity = 103/337 (30.56%), Postives = 145/337 (43.03%), Query Frame = 1 
Query:    4 IDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLY-MTGFSREESFHSGGAALRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAVRWVTGAWITGALGAVLMYAAASVP--GEEGASFSPQGVTHLVLTTSAACGILGQAVCTA----WALRKARLVFVVSDGDLVAYKRKLWLASTAAIVXXXXXXXXXIVECVEGGTWNMGWSIRRGAGAFVGGSGSSSIGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEYLLLAVEAGFCMALRHDLAPATGGVGVESFVL 993
            +D DYAELL R PP      ++   RAL     +L + T  +   L+ +TG  +E      G  +R+PT+++LG    P  + F  G+ L A+V + L W V+LAH QRL+ARTG+ +YD     A R    A   G   + L + A SVP         + Q   H+   T AA GI   A   A      L  AR VF++S+ D+  ++ KLW                    CV                  VG + S+ I        AV  Q+RW        DC  EWC   S+  + EY++      F  +L+HDLA   G + VE   L
Sbjct:    1 MDDDYAELLARPPPFAGTTHFSVRLRALPVFSAVLALSTVLVAGVLFGVTGKIKELP----GTGVRLPTVSRLGAYP-PGCYVFAGGMHLGAIVFMLLVWAVRLAHTQRLRARTGLEKYDSRGAAARRCADAACAVGTAFSALWFLAGSVPPLARYDGVAAAQDRAHV---TVAALGIAALAAYAAIVCFGVLLWARGVFLLSETDVFWFRWKLW--------------------CVA---------------VLVGAALSTWI--------AVPIQNRW---FPDGADCSLEWCRQASIQAVGEYVMFPAAVLFIFSLKHDLASVHGNLTVERVFL 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6081.16739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIE4_ECTSI2.200e-22294.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPN4_9STRA2.960e-2430.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6081contigEcto-sp13_S_contig6081:1064..5263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2021
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001590.1
Cds size996
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.5927799-CDS-Ecto-sp13_S_contig6081:1063..12611681463847.5927799-CDS-Ecto-sp13_S_contig6081:1063..1261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6081 1064..1261 +
1681463847.6050594-CDS-Ecto-sp13_S_contig6081:2651..27521681463847.6050594-CDS-Ecto-sp13_S_contig6081:2651..2752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6081 2652..2752 +
1681463847.6155663-CDS-Ecto-sp13_S_contig6081:3108..33811681463847.6155663-CDS-Ecto-sp13_S_contig6081:3108..3381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6081 3109..3381 +
1681463847.6265955-CDS-Ecto-sp13_S_contig6081:3814..42381681463847.6265955-CDS-Ecto-sp13_S_contig6081:3814..4238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6081 3815..4238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.6370203-UTR-Ecto-sp13_S_contig6081:4238..52631681463847.6370203-UTR-Ecto-sp13_S_contig6081:4238..5263Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6081 4239..5263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6081.16739.1prot_Ecto-sp13_S_contig6081.16739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6081 1064..4238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6081.16739.1

>prot_Ecto-sp13_S_contig6081.16739.1 ID=prot_Ecto-sp13_S_contig6081.16739.1|Name=mRNA_Ecto-sp13_S_contig6081.16739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp
MIDQDYAELLGRSPPSGEVLEWTFPARALADAFVLLLVGTPALCCTLYMT
GFSREESFHSGGAALRIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFW
CVKLAHHQRLQARTGVARYDIEAEGAVRWVTGAWITGALGAVLMYAAASV
PGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFVVSDGD
LVAYKRKLWLASTAAIVAVVAVLSVLIVECVEGGTWNMGWSIRRGAGAFV
GGSGSSSIGGFDDETAAVGDQDRWEDNVSSSRDCDTEWCYSRSLLGLWEY
LLLAVEAGFCMALRHDLAPATGGVGVESFVL*
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mRNA from alignment at Ecto-sp13_S_contig6081:1064..5263+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6081.16739.1 ID=mRNA_Ecto-sp13_S_contig6081.16739.1|Name=mRNA_Ecto-sp13_S_contig6081.16739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6081:1064..5263+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGACCAGGACTACGCGGAGCTTTTGGGGCGCTCCCCCCCTTCTGG
AGAGGTGTTGGAGTGGACCTTCCCCGCCCGCGCGCTGGCTGATGCGTTCG
TCTTGCTGCTGGTCGGCACCCCTGCTCTCTGTTGCACGCTCTACATGACA
GGCTTCTCCCGGGAGGAGAGCTTTCACAGCGGGGGTGCCGCGTTGCGGGT
GAGTCATTGCCGCATCATGCTGCAGGTAAAGCTTTGCTGTCGTCGCCGGT
TGCTAGGCGCTTCGGACATCAGGACAGCGAGAAAGATTTTTGAGCACGTA
TCTGCTGTCCAGAAGCTGTTCATGCTACAGGTGCTGCTGCTGGTGAACAG
CCGCAGCAGGACGTTGGGGAGGCTGCTGCCGCTGTCTTTACTGCCGTAGG
TTGCACCCACGCCCCAACCTTTCGGATAAACGTTTGCCTTCGATGGGCTG
CATATGCGGTTGCTGGGACCAGGATGGTTCGGTTGTTGTAGTCGACAAAG
AGAGGATCGTCCGCGCTGACCTGTGCGATATGATGGGTAGAGTTGTTGGT
ACATACGCAAAGCACACGCTAGACTAGAAGTGCAGGTTCAGCATGTCAGG
GTGGTGTTCTCGTACCCTCCGCGCCGTGCGTGGACCAGTCGTCGCAGCTC
TAGTTCTTGAGCGCGTGGAGTAAAGCCATTGAGGGGAAACAAGCGGTTAG
GTTGTTGTGCAATGTACTACTAACCAATGCTATAATAATAAGAACAGGCA
ACAGGTGATGGTTCGTTCGCGCAGAGCGACAAGCGCCAATAATCGTTGAA
ACCCCGTAAAGGTTCCCCCCCCCCTTCCGTGCTTCGGGCTTGAATCTACC
GGGGTGTTACTGTAAGGGTACCAGAGGGTTTAAGGGTGGGGCAGCGAAGG
CTTCGTGAGCTTGAGTGAGGGAGGGCGGGGGGCACACGGACGGGCACAGA
GTGTAACGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTTGATGCACCGGGCTGT
AGGACAGGACAAGGTTCCAGGGCGCTTTCTACAACGTTACGTCCCTCGCC
CGTCGCTGACATAATGCTCTCGTCGTTTCAAGTCTCTGATGTATTGTTGT
ACCGAGTGAAAACTTGAAGGCCGCCCAAACCCATAGGCATTTGTCGGCTT
TGTGCGGGGACCACTATTGTGACACAGCAGTGTTTTTAAATTTGGTGTAC
CTCCTCACTACCCTTTTACTCCTCTCGTGTCCTCGCAGATTCCGACCCTT
ACGCAGCTTGGCATGCGGAACAACCCCGTCGGGTTCACCTTTAGAGCCGG
CATACAGCTAGCCGCCGTCGTCGCCGTCCCTCTCTTCTGGTGAGCTATGC
ATGTGCATGCGATCGTCAATTTCCCAGCTGCTATACGATCGTCCCTCTGT
TCTTGTGTGACGACGGGTGTATCGTAGGTTAGGGTTGAACGAATGCGACA
CACTCGTTGTCGTGTATTGCTTCATTCCATAGCACTGTCACTCCGACTGC
TGGCTTGTGCCACACATTTTTGGACTGTGTATTTGAAGTACGTACGATAT
CTTCTTGCACTACTAGCGATGCCCGGTCTCCGATCAGACGCGACGACAGT
TGGTCACACCACGAACGATGAATATGATGCCCACTCCTACGAACCCCCTC
ACGCCTTCGCCCCCCCCTCAAAACTTCCACCCTGCCATGACCAAGGTGTG
TCAAATTGGCCCATCACCAGCGACTACAAGCCCGCACGGGTGTCGCGCGT
TACGACATCGAGGCCGAGGGAGCCGTAAGGTGGGTAACCGGGGCCTGGAT
CACGGGCGCACTGGGCGCCGTTCTCATGTACGCCGCGGCCAGCGTGCCGG
GGGAAGAGGGCGCGTCGTTCTCGCCGCAGGGCGTGACTCACCTGGTGCTC
ACCACGTCGGCGGCGTGCGGGATTTTGGGGCAGGCGGTGTGCACGGCTTG
GGCGCTTCGGAAGGCCAGGTGTGTACGGGTATCGGGCCGCGTGTACATCC
ACTTCATTCGTGGTCATGGTCACACTATCGAACAGTCGCTCGCATGCTGG
TGACGGCACGAAGAACGAAGCGCACCTAGGCGTTGCGACCTCGAGGCAAA
GCTTGCGCGGGCGAGTGGAAGGGAAACGTTTGGTGTTGGATTTGGTCGGG
GGGGGGGGGGGGACCGACTAAGACCACGTTGTTTATTCTCATGTGGTTTT
TAGTGGGTTTCTGTTGATGGCGGTGTAGCTCACGCTGGTTGAGCGCTCCG
GAAGGCCAAGTGTGGGTGCTGGGGAAAGGGTCGGTGCTAGTACGTTTCCG
AGAAAGTTACAACACGCCGCGCCGCCCACCAATTGCCAACCAACCGGTGA
AACGTCAACCAACCCCCCCTCGCGCACGCACGGGTCTGCGTGTGAACACA
GGCTGGTGTTCGTCGTGTCCGACGGTGATCTGGTGGCCTACAAGCGTAAG
CTGTGGCTGGCGTCAACGGCGGCGATCGTGGCGGTGGTGGCGGTACTTTC
GGTGCTGATCGTCGAGTGCGTGGAGGGCGGCACCTGGAACATGGGTTGGA
GTATACGCCGCGGTGCCGGCGCGTTCGTTGGGGGGAGCGGTAGTAGTAGT
ATTGGCGGTTTCGACGACGAAACGGCAGCGGTTGGGGATCAAGACCGGTG
GGAGGACAACGTGAGCAGTAGTCGCGACTGCGACACAGAGTGGTGTTACT
CCCGAAGCCTGCTGGGGTTGTGGGAGTACCTACTCCTCGCGGTGGAGGCC
GGGTTTTGCATGGCTCTGAGGCACGACCTGGCTCCGGCTACCGGCGGCGT
CGGGGTGGAGAGCTTCGTGCTATAGAATGCGCTCCGCGCTTTAGTTCAGG
CAGATCTCGCTGCTCTTGCTTCGTGGGTTGCCACAGAGCCGTTCGCGCCC
GTTGTCTTCGTTCAGAGCCATGCCCCAGGGTTTCACACAGGCGGCGTTTC
TAGTATAGACGAGTATTCTCCGAGCGTCATGCATGGACTGGCATCTTGCT
GTCGTGACCTCTAGGCGATAAGTTAGATTCGAATCGAGTCAAGACTTTAG
AATGAAGGTGGTGATTGTCTCGAGGGTCAAGAAATGAGGGATGGACCGCC
AGGGTCTTTTTGGGAAAGTTTTCGCTTGTGTTCGTTGTTGCTGTTGCTGT
TGAGAAGATCCGGGGTTCGAAGCTATTTCTCCCGGGCCGTGTGAACATTG
TTGACCACAACACAATGCCATTCAACGAGTAGGCTGAGGCCTTTACTCGT
ACTCTTCTGACGCTCTGCCCGGAATTAGGTAGCGGAATTCTGTTTGTGCG
TTCGTGTTGGAAGATTGATCACCTCAATGCACGTGCCGGACAAGGGAGAC
GGGTGGTCCAGGGTACATAGAAGCAGCTGTGAGGGCGTCGGTTTGCGTTG
TACATTTTTACCTGTAGAGATTCGTTGCACTCTCATGAGGTTCGTGTTGT
AGGGTTGCGAGGTGGGGTGGGATCGGGAGATGACGAGTGGTGTAACGTTT
GCGGTGCAGAGGGGAGTATACGTAAACATCTGATCGCAGCTTGCAGAAAT
TTAGCTTCCATCGGGCGGGATTCGAGAATTTGTTTACTACAGTATATTTA
CAGTTCGGTATTTGGAATGAAACTAATTATGGGTTGAACTGGCGGCGTCC
GGTCACCGGGGCCTACTGTGCCAATATAGCTACGTGTTTGTCATACACGT
TCAAGTTTGTCCGTCAGGGTATCGGTTATTCTTTCGTGATTGGAAGAGCC
TCACAATTGCTCTGCAGAAGCCCGCGAGCCCCCCCTTCGATCTTTGTCCG
TCCCTCTATCTCACCATTCCGATCTTACGTTTGTATCCAGAGTTTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6081:1064..5263+

>mRNA_Ecto-sp13_S_contig6081.16739.1 ID=mRNA_Ecto-sp13_S_contig6081.16739.1|Name=mRNA_Ecto-sp13_S_contig6081.16739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6081:1064..5263+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGACCAGGACTACGCGGAGCTTTTGGGGCGCTCCCCCCCTTCTGG
AGAGGTGTTGGAGTGGACCTTCCCCGCCCGCGCGCTGGCTGATGCGTTCG
TCTTGCTGCTGGTCGGCACCCCTGCTCTCTGTTGCACGCTCTACATGACA
GGCTTCTCCCGGGAGGAGAGCTTTCACAGCGGGGGTGCCGCGTTGCGGAT
TCCGACCCTTACGCAGCTTGGCATGCGGAACAACCCCGTCGGGTTCACCT
TTAGAGCCGGCATACAGCTAGCCGCCGTCGTCGCCGTCCCTCTCTTCTGG
TGTGTCAAATTGGCCCATCACCAGCGACTACAAGCCCGCACGGGTGTCGC
GCGTTACGACATCGAGGCCGAGGGAGCCGTAAGGTGGGTAACCGGGGCCT
GGATCACGGGCGCACTGGGCGCCGTTCTCATGTACGCCGCGGCCAGCGTG
CCGGGGGAAGAGGGCGCGTCGTTCTCGCCGCAGGGCGTGACTCACCTGGT
GCTCACCACGTCGGCGGCGTGCGGGATTTTGGGGCAGGCGGTGTGCACGG
CTTGGGCGCTTCGGAAGGCCAGGCTGGTGTTCGTCGTGTCCGACGGTGAT
CTGGTGGCCTACAAGCGTAAGCTGTGGCTGGCGTCAACGGCGGCGATCGT
GGCGGTGGTGGCGGTACTTTCGGTGCTGATCGTCGAGTGCGTGGAGGGCG
GCACCTGGAACATGGGTTGGAGTATACGCCGCGGTGCCGGCGCGTTCGTT
GGGGGGAGCGGTAGTAGTAGTATTGGCGGTTTCGACGACGAAACGGCAGC
GGTTGGGGATCAAGACCGGTGGGAGGACAACGTGAGCAGTAGTCGCGACT
GCGACACAGAGTGGTGTTACTCCCGAAGCCTGCTGGGGTTGTGGGAGTAC
CTACTCCTCGCGGTGGAGGCCGGGTTTTGCATGGCTCTGAGGCACGACCT
GGCTCCGGCTACCGGCGGCGTCGGGGTGGAGAGCTTCGTGCTATAG
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