mRNA_Ecto-sp13_S_contig608.16736.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig608.16736.1
Unique NamemRNA_Ecto-sp13_S_contig608.16736.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: D7FK30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK30_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 6.300e-111
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 3 
Query:  924 QGCGGRVGNGGPNPMYLGRRFRFIGEDRIYNDGGPSYVLNQASVGLLASHLDDDTCQPHAAKHGEDILVAWCLQKNGVEAFNTRDALGRERFQPFAPAAHFGYRMPQKLEDRVVSGCVVGAWYIIQGIDLKFGRECCSQDSLSFHFVGEQVSRRLHDLIYACPKYQADEAVVARV 1448
            +G  G + NGGPNPMYLGRRFRFIGEDRIYN+GGPSYVLNQASVGLLASHLDDD CQPHAAKH EDILVAWCL+KNGVEAF+TRDALGRERF PF PAAHFGYRMPQKLEDR+VSGCVVGAWYIIQGIDLKFGRECCSQDSLSFH+VGEQVSRRLHDLIYACPKYQAD  VVARV
Sbjct:  176 KGAAGGLENGGPNPMYLGRRFRFIGEDRIYNNGGPSYVLNQASVGLLASHLDDDACQPHAAKHWEDILVAWCLKKNGVEAFDTRDALGRERFHPFTPAAHFGYRMPQKLEDRLVSGCVVGAWYIIQGIDLKFGRECCSQDSLSFHYVGEQVSRRLHDLIYACPKYQADAPVVARV 350
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: D7FTE6_ECTSI (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE6_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.570e-95
Identity = 163/304 (53.62%), Postives = 196/304 (64.47%), Query Frame = 1 
Query:   61 GCFDDSRDRRIMPWAYV-----MSQKEPMSAMQCCLICDDGIDTHFGTQDSNECWCSSEPELSEFGPELNPGDCNMLCDGTTIGETWRDTRDECVRD-HIIPGLRQRGVRCTVSARFLRRP-ADNGATLGLPGKIRRLKLLHTDREWCLLFDQRGISSLTNASFPGS-CNMEDFHKKLLTQIDVWEGAEKGAPRIFCGMHTHGKNHATKVKAVKETWASHCDVFVAFSDVTDLELHTLKIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLRKYLLSDEIKGAAGGLE 948
            GCF DS   RIMP   +     M+Q+ PMSA  C  ICDDG++THFG + S ECWC+ EP+L++ GPEL+P +C+ LC GTT  E         V +     G         V       P +++   +G P   +       D       D+   SS +N    GS C++ED HKKLL Q  VW+GA K  PR+FCG++TH  NHATKVKA+KETWASHCD FVAFSD  DLEL T  IKHEGPEEY+NMWQK+RAIWKYINFHYK DFDW VLGG DLF+IVENLRKYLLS+E+K AAGGLE
Sbjct:   36 GCFADSTIDRIMPNIRLVHLQEMTQQGPMSAETCYFICDDGLNTHFGMEYSTECWCAVEPDLTKHGPELDPIECDHLCFGTTTDEYCGGFNKMSVYEITAYQGCHSEDFEVPVEHVPAWVPGSEDKQIIGQPWDFQE----KFDPVNFFFSDRGDSSSFSNHVRNGSSCDVEDDHKKLLDQTHVWQGARKTTPRVFCGIYTHQNNHATKVKAIKETWASHCDGFVAFSDAADLELQTFMIKHEGPEEYTNMWQKSRAIWKYINFHYKDDFDWFVLGGDDLFIIVENLRKYLLSEEVKRAAGGLE 335
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 4.450e-84
Identity = 153/298 (51.34%), Postives = 182/298 (61.07%), Query Frame = 1 
Query:   61 GCFDDSRDRRIMPWAYVMSQKEPMSAMQCCLICDDGIDTHFGTQDSNECWCSSEPELSEFGPELNPGDCNMLCDGTTIGETWRDTRDECVRDHIIPGLRQRGVRCTVSARFLRRPA-DNGATLGLPGKIRRLKLLHTDREWCLLFDQRGISSLTNAS-FPGSCNMEDFHKKLLTQIDVWEGAEKGAPRIFCGMHTHGKNHATKVKAVKETWASHCDVFVAFSDVTDLELHTLKIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLRKYLLSDEIKGAAGGLE 948
            GC+ DS  +RI+       Q  PMSA  C + CDDG++THFG Q S ECWC   PEL++ G EL  G+C+ LC GTT GE             I  G  +  V    + +  +  A D     G P            + W       G + L+  S  PG+C+  D H+KLL Q+ VWEGA K APRIFCG+ T  +NH T VKA+KETWASHCD FVAFSD TD EL TLKIK EG EE  NMWQK+RAIWKYINFHYK DFDW +LGG DLFLI ENLRKYLLSDE+K A GG++
Sbjct:   44 GCYADSVGKRIL---NSRGQHNPMSAEMCYMFCDDGVNTHFGMQYSGECWCGIHPELNQNGEELAAGECDFLCAGTTTGE-------------ICGGFLKMSVFEITAYKGCQYEALDQPIGRGSPPISGSEDTQIVGQPWDYQEKIDGTNFLSAQSDLPGACDGNDDHQKLLAQVRVWEGAAKTAPRIFCGISTRHQNHRTNVKAIKETWASHCDGFVAFSDKTDQELSTLKIKREGLEEEGNMWQKSRAIWKYINFHYKEDFDWFILGGDDLFLIAENLRKYLLSDEVKSAGGGIK 325
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: D7FK31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK31_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 9.410e-79
Identity = 136/271 (50.18%), Postives = 167/271 (61.62%), Query Frame = 1 
Query:  145 CCLICDDGIDTHFGTQDSNECWCSSEPELSEFGPELNPGDCNMLCDGTTIGETWRDTRDECVRDHIIPGLRQRGVR-CTVSARFLRRP--ADNGATLGLPGKIRRLKLLHTDREWCLLFDQRGISSLTNASFPGSCNMEDFHKKLLTQIDVWEGAEKGAPRIFCGMHTHGKNHATKVKAVKETWASHCDVFVAFSDVTDLELHTLKIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLRKYLLSDEIKGAAGGLE 948
            C ++CDDG++THFGT  S EC C   PEL+  G +L P +C+  C G           D+C   H +        + C      L  P  + +G  +G P   ++      D      F +    S  +      C++ D HKKLL Q+DVWE A   +PR+FCG++TH  NHATKV A+KETWA HCD FVAFSDV D  + + KIKHEGPEEYSNMWQK+RAIWKYINFHYK DFDW VLGG DLFLI+ENLRKYLLSDEI  AAGGL+
Sbjct:    2 CYMLCDDGLNTHFGTLSSRECRCGINPELNIDGGKLEPIECDHHCAGG----------DDCGESHNMVVFEITAYQGCPPEVEALDDPDSSQDGQKIGEPWDYQK----KFDTTNFFKFTEASSFSWVDEEPAEECDINDDHKKLLAQVDVWEDAVTNSPRVFCGIYTHQNNHATKVMAIKETWARHCDGFVAFSDVADDAILSFKIKHEGPEEYSNMWQKSRAIWKYINFHYKDDFDWFVLGGDDLFLIMENLRKYLLSDEIIRAAGGLQ 258
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: A0A6H5L1N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 5.160e-67
Identity = 130/256 (50.78%), Postives = 150/256 (58.59%), Query Frame = 1 
Query:  196 SNECWCSSEPELSEFGPELNPGDCNMLCDGTTIGETWRDTRDECVRDHIIPGLRQRGV-RCTVSARFLRRPADNGATLGLPGKIRRLKLLHTDREWCLL--FDQRGISSLTNASFPGSCNMEDFHKKLLTQIDVWEGAEKGAPRIFCGMHTHGKNHATKVK---AVKETWASHCDVFVAFSDVTDLELHTLKIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLRKYLLSDEIKGAAGGL 945
            + +CWC   PEL++ G EL  G+C+ LC GTT GE             I  G  +  V   T          D     G P            + W      D     S T ++ PG+C   D HKKLL Q+ VWEGA K APRIFCG+ T  +NH T VK   A+KETWASHCD FVAFSD TD +L+TLKIK EG EE  NMWQK RAIWKYINFHYK DFDW +LGG DLFLI ENLRKYLLSDE+K A GG+
Sbjct:  107 NTKCWCGIHPELNQNGEELAAGECDFLCAGTTTGE-------------ICGGFLKMSVFEITAYMGCQYEALDQPIGRGSPPISGSEDTQIVGQPWDFQEKIDATNFLS-TQSALPGACGRNDDHKKLLAQVRVWEGAAKTAPRIFCGISTRHQNHRTNVKVGRAIKETWASHCDGFVAFSDKTDQDLNTLKIKREGLEEDGNMWQKIRAIWKYINFHYKEDFDWFILGGDDLFLIAENLRKYLLSDEVKSAGGGI 348
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: A0A6H5JR56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR56_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 3.640e-66
Identity = 113/171 (66.08%), Postives = 120/171 (70.18%), Query Frame = 3 
Query:  936 GRVGNGGPNPMYLGRRFRFIGEDRIYNDGGPSYVLNQASVGLLASHLDDDTCQPHAAKHGEDILVAWCLQKNGVEAFNTRDALGRERFQPFAPAAHFGYRMPQKLEDRVVSGCVVGAWYIIQGIDLKFGRECCSQDSLSFHFVGEQVSRRLHDLIYACPKYQADEAVVARV 1448
            G + NGGPNPM LGRRFRFIGE RIYN+GGPSYVLNQASVG L +HLDDD CQ HAAKH E IL  W                               YRMP+K E R+  GCVV AWYIIQGID KFGRECCSQ+SLSFH+VGEQVSRRLHDLIYA PKYQAD AVVARV
Sbjct:   88 GGLENGGPNPMCLGRRFRFIGEKRIYNNGGPSYVLNQASVGQLPNHLDDDACQSHAAKHWEGILFEW-------------------------------YRMPKKPEGRLFPGCVVCAWYIIQGIDPKFGRECCSQESLSFHYVGEQVSRRLHDLIYARPKYQADAAVVARV 227
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: D7FK28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK28_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 1.090e-65
Identity = 108/158 (68.35%), Postives = 122/158 (77.22%), Query Frame = 1 
Query:  469 DREWCLLFDQRGISSLTNASFPGSCNMEDFHKKLLTQIDVWEGAEKGAPRIFCGMHTHGKNHATKVKAVKETWASHCDVFVAFSDVTDLELHTLKIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLRKYLLSDEIKGAAGG 942
            D +   L  Q   SSL+  S   +C M D HKK+LT +DVWEGA K  PRIFCG+ TH KNH TKVKA+KETWA +CD FVAFSD  D +LHT +I+HEGPEEY NMWQK+RAIWKYINFHYK DFDW +LGG DLF+IVENLRKYLLSDEI  AAGG
Sbjct:  150 DTKKIFLPTQYSTSSLSGDSSARACAMNDDHKKMLTHVDVWEGASKTMPRIFCGIFTHRKNHFTKVKAIKETWAVNCDGFVAFSDAADPDLHTFQIEHEGPEEYGNMWQKSRAIWKYINFHYKNDFDWFLLGGDDLFVIVENLRKYLLSDEIMHAAGG 307
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: A0A6H5JVG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG9_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 1.660e-65
Identity = 129/252 (51.19%), Postives = 151/252 (59.92%), Query Frame = 1 
Query:  205 CWCSSEPELSEFGPELNPGDCNMLC-DGTTIGETWRDTRDECVRDHIIPGLRQRGVRCTVSARFLRRP--ADNGATLGLPGKIRRLKLLHTDREWCLLFDQRGISSLTNASFPGSCNMEDFHKKLLTQIDVWEGAEKGAPRIFCGMHTHGKNHATKVKAVKETWASHCDVFVAFSDVTDLELHTLKIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLRK-YLLSDEIKGAAGGLE 948
            C C   PEL+  G +L P +C+  C DG   GE+      E     I P            A  L  P  + +G  +G P   +       D      F +    S  +      C++ D HKKLL Q+DVWE A   +PR+FCG++TH KNHATKV A+KETWA HCD FVAFSDV D  +  L IKHEGPEEYSNMWQK+RAIWKYINFHYK DFDW VLGG DLFLIVENLRK YLLSDEI  AAGGL+
Sbjct:   17 CRCGINPELNIDGGKLEPIECDRHCADGNDCGESRNMAVFEITAYQICPR----------EAEALDNPISSQDGQKIGEPWDYQE----KFDTTNFFKFTEDSSFSWVDEEPAEECDINDDHKKLLAQVDVWEDAVTNSPRVFCGIYTHHKNHATKVMAIKETWARHCDGFVAFSDVADDAI--LSIKHEGPEEYSNMWQKSRAIWKYINFHYKDDFDWFVLGGDDLFLIVENLRKVYLLSDEIIRAAGGLQ 252
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: A0A6H5JMC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC5_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 5.820e-65
Identity = 109/172 (63.37%), Postives = 126/172 (73.26%), Query Frame = 3 
Query:  930 CGGRVGNGGPNPMYLGRRFRFIGEDR-IYNDGGPSYVLNQASVGLLASHLDDDTCQPHAAKHGEDILVAWCLQKNGVEAFNTRDALGRERFQPFAPAAHFGYRMPQKLEDRVVSGCVVGAWYIIQGIDLKFGRECCSQDSLSFHFVGEQVSRRLHDLIYACPKYQADEAVVA 1442
             GGR+ NGGPNPMYLGRR R   +D  I+N GG SYVLNQASV LLAS+LD+D CQPH     ED++VA CL+KNGV AF+TRD  GRERF P+ PA HFGYRMP + EDR VSG VVG WYI   IDL FG E CS DSLSFH+V E + RRL+ L+Y+C +  AD  V A
Sbjct:  253 AGGRI-NGGPNPMYLGRRLRPFNDDEWIFNSGGASYVLNQASVRLLASYLDEDACQPHKKTSWEDVMVAMCLKKNGVVAFDTRDESGRERFHPYTPAVHFGYRMPMRPEDRFVSGIVVGDWYISMAIDLVFGLEGCSSDSLSFHYVDEDLMRRLYHLVYSCDRDPADAVVQA 423
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BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Match: D7G568_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G568_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 1.060e-59
Identity = 95/138 (68.84%), Postives = 113/138 (81.88%), Query Frame = 1 
Query:  535 GSCNMEDFHKKLLTQIDVWEGAEKGAPRIFCGMHTHGKNHATKVKAVKETWASHCDVFVAFSDVTDLELHTLKIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLRKYLLSDEIKGAAGGLE 948
            G C++ D HK+L+ Q+DVW GA K APRIFCG++T+  NH TK+KA+KETWAS CD FVAFSD  DL + + KIKHEGPEE+ NMWQK+RAIWKYI+ HY  DFDW VLGG D+FLIVENLRKYLLSD+IK AAGG +
Sbjct:   96 GVCDLNDSHKQLIAQVDVWGGAAKTAPRIFCGVYTYHANHDTKIKAIKETWASRCDGFVAFSDQVDLAVPSFKIKHEGPEEWDNMWQKSRAIWKYIDRHYINDFDWFVLGGDDIFLIVENLRKYLLSDDIKKAAGGFK 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig608.16736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK30_ECTSI6.300e-11190.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTE6_ECTSI1.570e-9553.62WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FK39_ECTSI4.450e-8451.34WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK31_ECTSI9.410e-7950.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1N0_9PHAE5.160e-6750.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR56_9PHAE3.640e-6666.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK28_ECTSI1.090e-6568.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVG9_9PHAE1.660e-6551.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMC5_9PHAE5.820e-6563.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G568_ECTSI1.060e-5968.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig608contigEcto-sp13_S_contig608:7134..13845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score305.1
Seed ortholog evalue5.1e-80
Seed eggNOG ortholog2880.D7FTE6
Model size1448
KEGG koko:K00731
KEGG ReactionR05908
KEGG Pathwayko00512,ko01100,map00512,map01100
KEGG ModuleM00056
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity
EggNOG OGsKOG2246@1,KOG2246@2759
EC2.4.1.122
Cds size1251
COG Functional cat.S
CAZyGT31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig608.16736.1prot_Ecto-sp13_S_contig608.16736.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig608 7134..13648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.2888036-CDS-Ecto-sp13_S_contig608:7133..71901681463847.2888036-CDS-Ecto-sp13_S_contig608:7133..7190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 7134..7190 +
1681463847.3035688-CDS-Ecto-sp13_S_contig608:8226..83101681463847.3035688-CDS-Ecto-sp13_S_contig608:8226..8310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 8227..8310 +
1681463847.3191442-CDS-Ecto-sp13_S_contig608:8944..90071681463847.3191442-CDS-Ecto-sp13_S_contig608:8944..9007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 8945..9007 +
1681463847.330133-CDS-Ecto-sp13_S_contig608:9602..99461681463847.330133-CDS-Ecto-sp13_S_contig608:9602..9946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 9603..9946 +
1681463847.3435016-CDS-Ecto-sp13_S_contig608:10702..108231681463847.3435016-CDS-Ecto-sp13_S_contig608:10702..10823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 10703..10823 +
1681463847.3532372-CDS-Ecto-sp13_S_contig608:11335..114121681463847.3532372-CDS-Ecto-sp13_S_contig608:11335..11412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 11336..11412 +
1681463847.3620768-CDS-Ecto-sp13_S_contig608:11666..118231681463847.3620768-CDS-Ecto-sp13_S_contig608:11666..11823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 11667..11823 +
1681463847.3744605-CDS-Ecto-sp13_S_contig608:12154..123781681463847.3744605-CDS-Ecto-sp13_S_contig608:12154..12378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 12155..12378 +
1681463847.3848212-CDS-Ecto-sp13_S_contig608:12670..127711681463847.3848212-CDS-Ecto-sp13_S_contig608:12670..12771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 12671..12771 +
1681463847.4014652-CDS-Ecto-sp13_S_contig608:13625..136481681463847.4014652-CDS-Ecto-sp13_S_contig608:13625..13648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig608 13626..13648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463847.4117298-UTR-Ecto-sp13_S_contig608:13648..138451681463847.4117298-UTR-Ecto-sp13_S_contig608:13648..13845Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig608 13649..13845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig608.16736.1

>prot_Ecto-sp13_S_contig608.16736.1 ID=prot_Ecto-sp13_S_contig608.16736.1|Name=mRNA_Ecto-sp13_S_contig608.16736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=417bp
MTDQVQKHARAPAAPAARRAGCFDDSRDRRIMPWAYVMSQKEPMSAMQCC
LICDDGIDTHFGTQDSNECWCSSEPELSEFGPELNPGDCNMLCDGTTIGE
TWRDTRDECVRDHIIPGLRQRGVRCTVSARFLRRPADNGATLGLPGKIRR
LKLLHTDREWCLLFDQRGISSLTNASFPGSCNMEDFHKKLLTQIDVWEGA
EKGAPRIFCGMHTHGKNHATKVKAVKETWASHCDVFVAFSDVTDLELHTL
KIKHEGPEEYSNMWQKARAIWKYINFHYKYDFDWSVLGGGDLFLIVENLR
KYLLSDEIKGAAGGLEMEAQIQCTSEGVSVLSAKIAYTTTGDRHMCSTRR
LWGCWRVTWTMIPASHTLQNTGKISWLLGAYRKMAWRRSTLGTLLDVSDS
NPSRPQLTSGIACPRS*
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mRNA from alignment at Ecto-sp13_S_contig608:7134..13845+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig608.16736.1 ID=mRNA_Ecto-sp13_S_contig608.16736.1|Name=mRNA_Ecto-sp13_S_contig608.16736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6712bp|location=Sequence derived from alignment at Ecto-sp13_S_contig608:7134..13845+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGATCAGGTCCAAAAACACGCACGGGCACCTGCCGCACCTGCCGC
AAGGCGAGTGAGTTCTGACAGTCCCGCCCTCCCGAAGCAAAAAAAATAAT
ACTGGTGCATATCTTTCGGATTGTAGACACCAAACACAAACGCTTATGCA
TTTTGCGCACGCAGCACGCACACAGCTCACACACCAACGCAATCATCACC
CTGCATGGCCCAAAGCCGTACTGACAGTACCCTCCCGGTATCAGCACCTG
TGTAGCAAAATTTCCTGTCCGTAGATCCGGTGTCTGGTTCCGTGCCGGTC
GCTGCACAGGGTTGTGGTTGTGCTAATAAAGGGCGGAAGGCTCCAGCTGC
AGGTGTGATGAAGCTCCTAAACCTCTCGGTGCTCTTTGTGCATCTTCCTA
CGCATCAGGCAGGTGAGGGTGTCGCTAATCAGCTGATTCTTGCAAGTTGT
GGACCGTAATCGGCTGCTGAACACATCGGCGCACTCAGCAGCGTCGCCGA
TTGACTGACGAGTTGGGAATGGGTTACGGGTTTCATGCACACAAAAGCAT
GTTTTCCAAATGATCAATTACATATGTCTCTCGTCGATGCTGTTGAGGAC
TGAAATTTTGGCTCGCAGTAGGGTGGTTTCAGATTTATTCGGTAAGGTTT
GGCCCTGTGTCACCATTTCAATACTCTCTCCCCTCCCTTCCACTCTCTTG
GGCAAGCTAGAAATCATTGTTTTTGGAAGAGAGATGGTTTCCATCCCGTT
GATCCTCAGCGGGTATTGGTACTCTATGTTTCCATCGCCATCGTATTCTA
TTTTCAGGCTGTATCGTCGAGTCCGACCAGACAGCATCAACCACCAACCC
TTTTGAACACGCATGAATCGGGCCGAGCACTTGGAAACACCTAGTCTACG
CGTCTTGCGTCCCTACAAAATTATTTCTCCTCAACTACAACGCGCGACCA
ATCGTGGGCTTAGCCCAATACCGGTGGCAGCCTTGTTCCCCGTACCGTTC
CGAACGCCCTCCCGAACGCCGTTGCCCACGCTATTGTAAACGCCAACTCC
TTTCCTTCCGCTTCCGCTTCAAAGGCTGCCCCGCTGACTATAGGCTGGCT
GCTTCGACGACTCGAGAGACCGTCGGATCATGCCTTGGGCGTACGTGATG
AGTCAGAAGGAGCCCATGTCTGCCATGGTAAAGAATATGTTTTGGTTCGT
TGGAGTCGAAGTCTCGAGAGGCGAACTCAAGATAGGGGCAGAGAAGGGGG
GCGGTTGTCTGCAATCCCCCACGGGGGCAGTTTTTCACAGGGTGTGCGTG
CAAGTCTTCTCTGGTGATGTCCTCACCGCACCGCAAAACACCTACGGCAC
CGCCCAGAGTGCTCTTGGGTGGGCTGTGATGCGACCATGTCGCCATAAGC
ATCTTAACAAAAAGAAACGGAGGAAATCATGAAGCAAACGAAGAACCGTC
AACTCCAGGGGGGCACTTGCTTTTTTGTTCTATAAGCATTTTTCGGGGGC
GGGACAAATTTGCGGTGAGGCGTGGCAACTCCTAAGTTTGCAAACAATCG
GCGTTTGGATTTTCCTCAATTGGTATTTTCAGGTACCTATGGTGTGGATG
CGACTCGTTTACCGTCCCTCTGGCTCTTGGTACAACCTTCCTTGCGGGTC
CTGTTACTTTCTCTTTGTGCACGAACATGCCTAGCGTAGCAGTTTCGAGA
CACATGCGTATGATCCGGTAACGTTTCCAGCTTACTCGATCGATATCTCC
AAAAAAACTCACGTTGCTCGCTTGTGTCCCATTAACTCGTCTCACCTTTT
TGAGCAATCAGCAATGCTGCCTGATCTGCGACGACGGGATAGATACGCAC
TTCGGCACGCAGGACTCTAACGAGGTGAGTACGCGACACAGGTTGACCGC
CTACTGGAATTCACCTGGCTGTGTCTTTGCCAACACCTTGACCGTGGGCC
TTCAACGGTTTCTGGTTGGTAGCCGTCTCTATCCATGACGATGTCCGTAC
CAATTGCCGAACTGAAAAATGGCATGATGGGTTTGGGTTAGGTTGACGAT
TTTCCTTCCGAAGGTTCGAAGCAATGATTGTGATATTCGTACCAGCTGCG
ACTCAAGTCGTCAGGTGCTAAATTCTGTAAACTTGTCGGCCCGTTTGGGT
CGGTGCACACGATCGCCACGTGCGAGAGTTGGCGTATCGTGTTTGACGAC
CCCCGTGTTTCCTTTTCAGCCAGTCGAGTGCCGTCCATTCCCGCCCGGGT
GCTGAGTGCCATGAATATGCGCCCCCGCCCAAGCAGCATGGCACTGTATT
GCCAAGAACCCTTGCTCAGGGTGTTGCATGCATACAAAGGTATATCTAGG
TCGTAACTGAGGCAAAATACCACGTCCAGACCAAGCATGTGCTGAACGGA
AGAAATTCGGGGCAACTCGTTCCCGCCAAAGATCTTTTTGGCTATGCCGT
GGAAAACTCATATCGACAGTGCTGGTGCTCCAGTGAACCCGAGCTAAGCG
AGTTTGGTCCCGAACTAAACCCCGGCGACTGCAACATGCTGTGCGACGGT
ACTACCATCGGTGAGACGTGGAGGGATACACGAGATGAGTGTGTACGAGA
TCACATCATACCAGGGCTGCGACAGCGAGGAGTTCGATGTACCGTCTCAG
CACGCTTCCTCAGAAGGCCAGCAGATAATGGGGCAACCCTAGGACTACCA
GGAAAAATTCGACGCCTCAAGCTTCTTCATACCGACCGAGAGTGGTGTCT
CCTCTTTGACCAACGTGGTATCTCCTCTTTGACCAACGCCAGTTTTCCTG
GGTCGTGCAATATGTGAGTTCCAATCGCCAGTTTAGTATCTTCATGCACT
TCTTTGCGAGGGAAGTGGCAATCCCTACGAACTGAAGGCACATTGTGGCC
GATCGGTCGACGTTCTCGGCAAGGTCTGGCGGGTTGTTGGAAGCGGAGTC
TTTTCGACATCCCGGCCCGACGTTTCATCTGCAGCGGTTGTTTTCAAGGT
CGTGCCAAGTCGAAGTTAGAAGATCATTGCTTTTCATGGACCCACGACAT
GACAACTGTGTCTACCGCGTGGTGGCAGTCGACCTCCTCTCTATATATGG
GGGGTTTGAATATGTGGTGCCTCATGAAGACTCACGGCGTATCAATGGAA
CTTTCCATGAGATATATTGTGTAAATCAAGTACCAAGAACACCCAATGTC
GTGGAAACACAAGATATCCTCTAGGTCTTCTTTCTTTTCCCACCGGCGAG
GGTTCAGCATGAAAGGTAGCATCAGCAGTTTTTCACCCATTCCGACTAGC
ACAGACAAAGAGCGACACACGTCGGATAGCACGCATGGTGATGCTGATCT
GGGGAACGCAAACTGAACACCTCGTTTTGGATCTGGGCAACTTCTGCGAG
CACCACGTCGAATCGGTAGGTCTTGCATTCCAGACGAGTTAGCCGCTTTG
ACGAAGGGTATATCTGTTTCTGTTCGGCTCCGCGCTATATACTACGAAGT
ACATGATACACTGGTTGTGCTTGTTTTTTTAAGGGGGTGTTATTTTCTTG
ATGTCCTCCATACTCTCAGGGAAGACTTCCACAAGAAACTCCTAACCCAG
ATCGACGTCTGGGAAGGTGCCGAAAAAGGTGCACCGAGAATATTCTGCGG
TATGCACACGCACGGAAAGAACCACGCGACGAAAGTGAAGGTAGGTCAGT
AGTGGATAGAGTCAGACGACCCTTGGTGAATGGGGAGTGCTGGCAATATT
GCTCGTAGCGCCGCACAGATATGGTTGTCTTGTGATTCACGTCTCCGCGC
CAGGGCTTGTCATGAGACGATACACTACTGCTGGGCTCTCTGTGTGTAGA
AACGATACGATCCAACCAAAAGAAATGTATCGTTGGTTGCTTTCACATTA
CACTTTTGAAGCATTTGCAAACGCAGTTTGATGCCCGACCTCCGACTTTC
GACGACCGTACGTAATACCCCCGGAACTACGAAGTGTTGTTGCAGTCTTT
ACGCGAATTTGCGCAACCCCTAGCACATCACTACACTCCGTAAGTCGCCA
GTAGTTTAGACGGATATTTCGCGCAGAAGATTCCTGCGGTAGGAATGATA
TAGCGAGCCCAGACATCCTCGGTATCGTGCTCGCCATGCACAATATGCTT
TCCTATTGGTTCTGCTGGGCGGGGGGCGTTCGCATGGGGTGCTGAACTGC
AGGCGGTTAAGGAGACATGGGCGTCGCACTGCGATGTGTTCGTGGCTTTC
AGCGACGTCACTGACCTCGAACTTCATACGTGAGAATCTTTATGGTGGTT
TTCGTTGGTTCGGAACTGCACTGTGTTCAGCGAAAACGGCTGCGCAAGGG
CTACGAAGTATAGAGATGACCATGTCCCGGACAGTCTATTGAGTGTCGCA
TTTCCAATAGGAACGACCAACCGAGCCCATTTTCCGCGACGTGCGTATTT
TCTTGATTGCGCATAATTTCACCGAAATAGTCTGCCAAAAATGTTTCCTG
GGCGCAAAATGTCGTTCGCGCGCCACAAGGAAGGCTTAAAATCAAGCACG
AAGGCCCTGAAGAGTACAGCAACATGTGGCAGAAGGCCAGGGCAATATGG
AAGTACATCAACTTCCACTACAAGTACGATTTCGACTGGTCCGTTCTTGG
CGGTGGCGACCTCTTCCTTATCGTGGAGAACTTGCGAAAGGTGTGCTGGA
GTACGACGACGAAAATTCAGCTCTCGAAACCTTTCTACTCGGGGTCCGGA
TTGTGTAATCACACGTTGTCTCATTCCAAGGCGACTTGCGATTGTACTTC
GATGTCTAATGTACCGCTTTCACTCGCGAATTGTCGCTAGTAAAATAACA
TCACTCGCACATGGAGAGTACTCAGGTTTTCCCCTAACGCAATCGTGTAG
TATGTGTTCATATTCGGGATGACATCACGAAGCCCAACACAGGCTGCTGG
ACATCAGTTTACCGTATGTTCTTAACTGCCAAATACTACGTCGGTTTGCC
CCCCTTCTTCCCCGTATCAAGTACCTGCTATCGGATGAGATCAAGGGTGC
GGCGGGAGGGTTGGAAATGGAGGCCCAAATCCAATGTACCTCGGAAGGCG
TTTCCGTTTTATCGGCGAAGATCGCATATACAACGACGGGGGACCGTCAT
ATGTGCTCAACCAGGCGTCTGTGGGGCTGTTGGCGAGTCACTTGGACGAT
GATACCTGCCAGCCACACGCTGCAAAACACGGGGAAGATATCCTGGTGAG
TAGTGGTAGTAGTGTAGCGAGAAGCACCCGACATTACGGGGCGGAAGGGT
TGAGGGGGGGTGAAGACGACGAAAGGCGCAAAGCGAGGAATCCCTTCTGC
AATAGTTCAATCGTGGAGTTGACCCTCTCCACCAGACCGAAATTTGACCG
CGGTCGCGTTTTCCTCCCGTAATACCAAGGAAGACCAACGGCAAAAGTCT
AGAACAAAACCTTCAGTTGGAAAGATTGAGTCCGGTTTCGCACGTACAAG
GGACAGTGACACTGCATGGGCGCTTTCTGCACGCCAGGTTGCTTGGTGCT
TACAGAAAAATGGCGTGGAGGCGTTCAACACTCGGGACGCTCTTGGACGT
GAGCGATTCCAACCCTTCGCGCCCGCAGCTCACTTCGGGTGAGCGTCAAC
GGTAGATCGTTGCCTTTTTCAGTACGATTGGCGGCATTACGCCGTACAGA
AACAACACCGTGTCTTCTGTTGTCGTCTCCGACGTACTCCGAGTATGCAA
CAACATTCAGAACTGTGCAGATGCCAGTTCTTGTTTGCCACGAGAACAAC
CAGCCAACCAGAAAAAACCACACATCGTGTTTTTTGTTTCCCGAGCAATG
ACCTCGCAATCCGTTCCCTAGTAGGCACTTATAGGCGGGTGGGCTCGTGG
GGTGCTTGTGGTTTGCTGGGACACAAGGGGACTTGGGGGGGCTTGGGGGG
GTGCTTGTGGTATTCTGTGAAACAAGGGGACCTATGTCATTGGTTCTGTC
ATCCACCAATCGAAAAAATAGTGCCAACACGTTTACTTGTTAGTGTTGCT
GTTTTCGCGTTAAAACCGTTTCCGGCCTCTGCCCAGTACCTTTGAGCATA
TGCTCGAAAAATCCCAGAAGTGCTATAGGCTCTACACAGCAGCAACAGAG
TCAGCAGCATTGCTGTGTTGCGTGTGTAGTGGCAAGATTCCTCCCAAATT
CCCTCGACTACCGCTACAATGTTCAGTCGTGACATCTGACCGCTAATTCG
AGGGTCTGTTCTCCAACAGTTTGAGTGATAGTCCCTCCGTCCGCCACTAA
TGAAGGAAGGAGGCAGTTTCTGCCCCAGGAAGAAGACGTGTTTCACCGTT
TAGTTTTCCACATCCTTATCCACGCACGACGCTTCATTTCGATGGTTGCC
ATGTGTCACGTCTTGCATGTTCTTCAGAGGAAGTTGCCGTGAAGAAAACA
TGTCTCGTTGCGCTCTACTGTAGCTGGGTCGTATCTTTGCAGGTATCGCA
TGCCCCAGAAGCTAGAGGACCGTGTTGTTTCAGGATGCGTGGTTGGTGCG
TGGTACATCATTCAGGGCATTGATCTGAAGTTCGGCCGCGAGTGTTGCTC
ACAAGACTCCCTCAGCTTCCACTTCGTGGGCGAGCAGGTCTCGAGACGAC
TTCACGATCTCATCTATGCCTGCCCGAAGTATCAAGCAGATGAAGCCGTA
GTCGCCAGAGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig608:7134..13845+

>mRNA_Ecto-sp13_S_contig608.16736.1 ID=mRNA_Ecto-sp13_S_contig608.16736.1|Name=mRNA_Ecto-sp13_S_contig608.16736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig608:7134..13845+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGATCAGGTCCAAAAACACGCACGGGCACCTGCCGCACCTGCCGC
AAGGCGAGCTGGCTGCTTCGACGACTCGAGAGACCGTCGGATCATGCCTT
GGGCGTACGTGATGAGTCAGAAGGAGCCCATGTCTGCCATGCAATGCTGC
CTGATCTGCGACGACGGGATAGATACGCACTTCGGCACGCAGGACTCTAA
CGAGTGCTGGTGCTCCAGTGAACCCGAGCTAAGCGAGTTTGGTCCCGAAC
TAAACCCCGGCGACTGCAACATGCTGTGCGACGGTACTACCATCGGTGAG
ACGTGGAGGGATACACGAGATGAGTGTGTACGAGATCACATCATACCAGG
GCTGCGACAGCGAGGAGTTCGATGTACCGTCTCAGCACGCTTCCTCAGAA
GGCCAGCAGATAATGGGGCAACCCTAGGACTACCAGGAAAAATTCGACGC
CTCAAGCTTCTTCATACCGACCGAGAGTGGTGTCTCCTCTTTGACCAACG
TGGTATCTCCTCTTTGACCAACGCCAGTTTTCCTGGGTCGTGCAATATGG
AAGACTTCCACAAGAAACTCCTAACCCAGATCGACGTCTGGGAAGGTGCC
GAAAAAGGTGCACCGAGAATATTCTGCGGTATGCACACGCACGGAAAGAA
CCACGCGACGAAAGTGAAGGCGGTTAAGGAGACATGGGCGTCGCACTGCG
ATGTGTTCGTGGCTTTCAGCGACGTCACTGACCTCGAACTTCATACGCTT
AAAATCAAGCACGAAGGCCCTGAAGAGTACAGCAACATGTGGCAGAAGGC
CAGGGCAATATGGAAGTACATCAACTTCCACTACAAGTACGATTTCGACT
GGTCCGTTCTTGGCGGTGGCGACCTCTTCCTTATCGTGGAGAACTTGCGA
AAGTACCTGCTATCGGATGAGATCAAGGGTGCGGCGGGAGGGTTGGAAAT
GGAGGCCCAAATCCAATGTACCTCGGAAGGCGTTTCCGTTTTATCGGCGA
AGATCGCATATACAACGACGGGGGACCGTCATATGTGCTCAACCAGGCGT
CTGTGGGGCTGTTGGCGAGTCACTTGGACGATGATACCTGCCAGCCACAC
GCTGCAAAACACGGGGAAGATATCCTGGTTGCTTGGTGCTTACAGAAAAA
TGGCGTGGAGGCGTTCAACACTCGGGACGCTCTTGGACGTGAGCGATTCC
AACCCTTCGCGCCCGCAGCTCACTTCGGGTATCGCATGCCCCAGAAGCTA
G
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