prot_Ecto-sp13_S_contig6079.16734.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6079.16734.1
Unique Nameprot_Ecto-sp13_S_contig6079.16734.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length346
Homology
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: D8LDA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA0_ECTSI)

HSP 1 Score: 641 bits (1654), Expect = 3.280e-231
Identity = 321/347 (92.51%), Postives = 328/347 (94.52%), Query Frame = 0
Query:    1 MTQQRPPNAVRKPSQPFVCHRGIDAGTRYYAVDIEMVTIEGPEDLSARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAA--PWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRPNGVGAGGIGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMSAAGLAWEAAPEFVC 345
            MTQQRPPNAVRKPSQPF CHRGIDAG RYYAVDIEMVTIEGPEDL ARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGL+ATWEEGIP SCVSDFL RHVEEGGV+VGWELH+DL+VLGFEKAA +IRSGERE LP E APIDG SLSF +APGNGSNTSSSSTARSRAVESPDAA  PW   RRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRP G GAGG+GRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKM AAGLAWEAAPEFVC
Sbjct:    1 MTQQRPPNAVRKPSQPFSCHRGIDAGARYYAVDIEMVTIEGPEDLPARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFLTRHVEEGGVLVGWELHSDLNVLGFEKAASQIRSGEREVLPTERAPIDGGSLSFKTAPGNGSNTSSSSTARSRAVESPDAAAWPWVGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRPEGGGAGGLGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMLAAGLAWEAAPEFVC 347          
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: A0A835YNX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX9_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.790e-45
Identity = 117/316 (37.03%), Postives = 155/316 (49.05%), Query Frame = 0
Query:   27 TRYYAVDIEMVTI-EGPEDLSARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAAPWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCF-DRMEE--GAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQAS----LGMLRPNGVGAGGIGRGIHGA-LEKDSGSNTYKLKFRSREGREAYLHCLERKMSAA 333
            +R  A+D EMV   + P + + R  +VS+GVVD  LE LLY R+AVP    + D  FAR    L   W +GIP +      R  V+  G VVGW+L  DL+VLGFE AA  +R+G R ++   G                                            +RVV+++D FR+++  KC L EAY   F DR  +  GAH+AAADAR+ MELF  WRR G PR  + L L F++VN H  +   + Q         LRP         RG  G  LE+D G N +KLKFR    R AY+  + R+M AA
Sbjct:   34 SRCIALDCEMVWANKQPAETTLRPVVVSIGVVDTELENLLYARIAVPPDVDIVDDSFARTSANLHPDWTKGIPHTTAQVLFRTMVQRAGTVVGWQLDGDLEVLGFEVAAAALRAGRRLSVDFGGGVS-----------------------------------------VRVVDLSDHFRSLHNSKCQLSEAYRAVFEDRPAQHWGAHHAAADARLCMELFRRWRRGGCPRS-VPLNLKFYVVNVHGLRRGGAHQERHQTLFEYLRPE--------RGNRGVVLEQDDGRN-FKLKFREENERAAYMCIVRRRMQAA 298          
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: A0A7S0DL02_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL02_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 4.240e-36
Identity = 95/308 (30.84%), Postives = 149/308 (48.38%), Query Frame = 0
Query:   28 RYYAVDIEMVTIEGPEDLSARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAAPWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSR---SRQASLG-MLRPNGVGAGGIGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMS 331
            R YA+D EM+ +   ++   ++A+VS G+VDE +E +LY RV  P    V +  F R  GGL+A + +G+      D + R V+EG ++VGW++ +DL  LG EK+           +P E                                              +++++   F T NG +C L EAY   F R    AHNA  DA++TMEL++ W  A + R+ + + LSFF +N+H FK S    SR  +L   LRP       +       +E+D G N YKLK+R +  R+AY+  +++++S
Sbjct:   42 RAYAIDCEMIEVYLQDNNKLQQAVVSTGIVDESMEVILYARVRKPSSSIVVNDAFVRTSGGLIADYNKGLSIFSTRDVISRLVQEGAIIVGWQIDSDLRALGLEKS-----------IPPE----------------------------------------------QIIDLAYKFVTTNGHRCKLAEAYRTVF-RRNFLAHNAGDDAKVTMELYHYWNEA-QKRQTVRVDLSFFCINWHCFKLSNTGMSRGDALWKFLRPRSTDREVL-------IEEDDGKNAYKLKYRQKADRDAYMLLVKKRLS 283          
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: A0A8J6C368_DIALT (C3H1-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C368_DIALT)

HSP 1 Score: 126 bits (316), Expect = 1.360e-29
Identity = 99/328 (30.18%), Postives = 143/328 (43.60%), Query Frame = 0
Query:   21 RGIDAGTRYYAVDIEMVTIEGPEDLSARR--AMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAAPWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLG--------------MLRPNGVGAGGIGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMSA 332
            + ++ G R +AVD E + +   + L AR     VSVG+V E LET+LY RV +P  C+V D  FAR  G L   W  GI        +R  V++G ++VGW++  DL  L  E                                   +NT                     PR   +V+++D F+T  G KC L EAY   F R    AH+A  DA+MTMEL+N WR      +P  L L ++ V +HS++P    +A LG              +LRP           +  AL K+     + LKFR+   R AY + ++R++ A
Sbjct:   75 QALNNGQRAFAVDCEFIQVRQGKGLDAREFSVTVSVGIVSEMLETILYARVRMPARCQVWDDAFARTVGALQPDWALGIRVDIACALVREFVDDGHILVGWQIEQDLRGLKLEDIL--------------------------------TNT---------------------PREQ-IVDLSDEFKTTQGNKCQLSEAYREIFGRTGS-AHDAIGDAKMTMELYNWWRT--HSMQPTPLRLCWYYVKWHSWRPV---EAGLGAHAGLDEYEAYRWKVLRPERSDRSTCIEELDDALRKE-----FVLKFRTDSERVAYFNLVKRRLCA 337          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDA0_ECTSI3.280e-23192.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNX9_9STRA3.790e-4537.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0DL02_9EUKA4.240e-3630.84Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A8J6C368_DIALT1.360e-2930.18C3H1-type domain-containing protein n=1 Tax=Diacro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 28..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6079contigEcto-sp13_S_contig6079:5569..7759 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6079.16734.1mRNA_Ecto-sp13_S_contig6079.16734.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6079 5197..8252 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6079.16734.1 ID=prot_Ecto-sp13_S_contig6079.16734.1|Name=mRNA_Ecto-sp13_S_contig6079.16734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
MTQQRPPNAVRKPSQPFVCHRGIDAGTRYYAVDIEMVTIEGPEDLSARRA
MVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTS
CVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGA
PIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAAPWEEPRRMRVVEVT
DLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGE
PREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRPNGVGAGGIGRGIHGAL
EKDSGSNTYKLKFRSREGREAYLHCLERKMSAAGLAWEAAPEFVC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf