mRNA_Ecto-sp13_S_contig6079.16734.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: D8LDA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA0_ECTSI) HSP 1 Score: 686 bits (1771), Expect = 3.230e-244 Identity = 343/372 (92.20%), Postives = 350/372 (94.09%), Query Frame = 2
Query: 494 MTQQRPPNAVRKPSQPFVCHRGIDAGTRYYAVDIEMVTIEGPEDLSARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAA--PWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRPNGVGAGGIGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMSAAGLAWEAAPEFVC*KKGARDGYQLSCESFKMHVLEHDR 1603
MTQQRPPNAVRKPSQPF CHRGIDAG RYYAVDIEMVTIEGPEDL ARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGL+ATWEEGIP SCVSDFL RHVEEGGV+VGWELH+DL+VLGFEKAA +IRSGERE LP E APIDG SLSF +APGNGSNTSSSSTARSRAVESPDAA PW RRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRP G GAGG+GRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKM AAGLAWEAAPEFVC KKGARDGYQLSC SFKMHVLE DR
Sbjct: 1 MTQQRPPNAVRKPSQPFSCHRGIDAGARYYAVDIEMVTIEGPEDLPARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLLATWEEGIPASCVSDFLTRHVEEGGVLVGWELHSDLNVLGFEKAASQIRSGEREVLPTERAPIDGGSLSFKTAPGNGSNTSSSSTARSRAVESPDAAAWPWVGRRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLGMLRPEGGGAGGLGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMLAAGLAWEAAPEFVCGKKGARDGYQLSCGSFKMHVLERDR 372
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: A0A835YNX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX9_9STRA) HSP 1 Score: 170 bits (430), Expect = 5.850e-44 Identity = 125/356 (35.11%), Postives = 168/356 (47.19%), Query Frame = 2
Query: 572 TRYYAVDIEMVTI-EGPEDLSARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAAPWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCF-DRMEE--GAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQAS----LGMLRPNGVGAGGIGRGIHGA-LEKDSGSNTYKLKFRSREGREAYLHCLERKMSAAGLAWEAAPEFVC*KKGARD---GYQLSCESFKMHVLEHDR 1603
+R A+D EMV + P + + R +VS+GVVD LE LLY R+AVP + D FAR L W +GIP + R V+ G VVGW+L DL+VLGFE AA +R+G R ++ G +RVV+++D FR+++ KC L EAY F DR + GAH+AAADAR+ MELF WRR G PR + L L F++VN H + + Q LRP RG G LE+D G N +KLKFR R AY+ + R+M AA + P + G+ + SC F H+ E R
Sbjct: 34 SRCIALDCEMVWANKQPAETTLRPVVVSIGVVDTELENLLYARIAVPPDVDIVDDSFARTSANLHPDWTKGIPHTTAQVLFRTMVQRAGTVVGWQLDGDLEVLGFEVAAAALRAGRRLSVDFGGGVS-----------------------------------------VRVVDLSDHFRSLHNSKCQLSEAYRAVFEDRPAQHWGAHHAAADARLCMELFRRWRRGGCPRS-VPLNLKFYVVNVHGLRRGGAHQERHQTLFEYLRPE--------RGNRGVVLEQDDGRN-FKLKFREENERAAYMCIVRRRMQAAHE--DLGPSLPAQESGSEKVTAAVRYSCRLFTAHLYEITR 336
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: A0A7S0DL02_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL02_9EUKA) HSP 1 Score: 142 bits (359), Expect = 2.930e-34 Identity = 100/331 (30.21%), Postives = 155/331 (46.83%), Query Frame = 2
Query: 506 RPPNAVRKPSQPFVCHRGIDAGTRYYAVDIEMVTIEGPEDLSARRAMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAAPWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSR---SRQASLG-MLRPNGVGAGGIGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMS 1486
R R+P P R R YA+D EM+ + ++ ++A+VS G+VDE +E +LY RV P V + F R GGL+A + +G+ D + R V+EG ++VGW++ +DL LG EK+ +P E +++++ F T NG +C L EAY F R AHNA DA++TMEL++ W A + R+ + + LSFF +N+H FK S SR +L LRP + +E+D G N YKLK+R + R+AY+ +++++S
Sbjct: 23 RGSGRARRPEGPLSPGRRA----RAYAIDCEMIEVYLQDNNKLQQAVVSTGIVDESMEVILYARVRKPSSSIVVNDAFVRTSGGLIADYNKGLSIFSTRDVISRLVQEGAIIVGWQIDSDLRALGLEKS-----------IPPE----------------------------------------------QIIDLAYKFVTTNGHRCKLAEAYRTVF-RRNFLAHNAGDDAKVTMELYHYWNEA-QKRQTVRVDLSFFCINWHCFKLSNTGMSRGDALWKFLRPRSTDREVL-------IEEDDGKNAYKLKYRQKADRDAYMLLVKKRLS 283
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Match: A0A8J6C368_DIALT (C3H1-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C368_DIALT) HSP 1 Score: 126 bits (316), Expect = 5.550e-28 Identity = 99/328 (30.18%), Postives = 143/328 (43.60%), Query Frame = 2
Query: 554 RGIDAGTRYYAVDIEMVTIEGPEDLSARR--AMVSVGVVDERLETLLYGRVAVPRGCKVTDGVFARMQGGLMATWEEGIPTSCVSDFLRRHVEEGGVVVGWELHNDLDVLGFEKAAREIRSGEREALPIEGAPIDGRSLSFMSAPGNGSNTSSSSTARSRAVESPDAAPWEEPRRMRVVEVTDLFRTMNGLKCTLQEAYAHCFDRMEEGAHNAAADARMTMELFNLWRRAGEPREPLGLPLSFFLVNFHSFKPSRSRQASLG--------------MLRPNGVGAGGIGRGIHGALEKDSGSNTYKLKFRSREGREAYLHCLERKMSA 1489
+ ++ G R +AVD E + + + L AR VSVG+V E LET+LY RV +P C+V D FAR G L W GI +R V++G ++VGW++ DL L E +NT PR +V+++D F+T G KC L EAY F R AH+A DA+MTMEL+N WR +P L L ++ V +HS++P +A LG +LRP + AL K+ + LKFR+ R AY + ++R++ A
Sbjct: 75 QALNNGQRAFAVDCEFIQVRQGKGLDAREFSVTVSVGIVSEMLETILYARVRMPARCQVWDDAFARTVGALQPDWALGIRVDIACALVREFVDDGHILVGWQIEQDLRGLKLEDIL--------------------------------TNT---------------------PREQ-IVDLSDEFKTTQGNKCQLSEAYREIFGRTGS-AHDAIGDAKMTMELYNWWRT--HSMQPTPLRLCWYYVKWHSWRPV---EAGLGAHAGLDEYEAYRWKVLRPERSDRSTCIEELDDALRKE-----FVLKFRTDSERVAYFNLVKRRLCA 337 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6079.16734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6079.16734.1 >prot_Ecto-sp13_S_contig6079.16734.1 ID=prot_Ecto-sp13_S_contig6079.16734.1|Name=mRNA_Ecto-sp13_S_contig6079.16734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp MTQQRPPNAVRKPSQPFVCHRGIDAGTRYYAVDIEMVTIEGPEDLSARRAback to top mRNA from alignment at Ecto-sp13_S_contig6079:5197..8252- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6079.16734.1 ID=mRNA_Ecto-sp13_S_contig6079.16734.1|Name=mRNA_Ecto-sp13_S_contig6079.16734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6079:5197..8252- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6079:5197..8252- >mRNA_Ecto-sp13_S_contig6079.16734.1 ID=mRNA_Ecto-sp13_S_contig6079.16734.1|Name=mRNA_Ecto-sp13_S_contig6079.16734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6079:5197..8252- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |