mRNA_Ecto-sp13_S_contig6076.16731.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6076.16731.1
Unique NamemRNA_Ecto-sp13_S_contig6076.16731.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6076.16731.1 vs. uniprot
Match: D8LNH8_ECTSI (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH8_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.140e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 VRDVEESKRVNANVQDRLAQRQTGEAQKEDARQHFWPHLLGEDMRLH 141
            VRD+EESKRVNANVQDRLAQRQTGEAQKEDARQHFWPHLLGEDMRLH
Sbjct:   40 VRDLEESKRVNANVQDRLAQRQTGEAQKEDARQHFWPHLLGEDMRLH 86
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BLAST of mRNA_Ecto-sp13_S_contig6076.16731.1 vs. uniprot
Match: A0A6H5KJM3_9PHAE (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.940e-19
Identity = 47/55 (85.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 VRDVEESKRVNANVQDRLAQRQTGEAQKEDAR--------QHFWPHLLGEDMRLH 141
            VRDVEESKRVNANVQDRLAQRQTGEAQKEDAR        QHFWPHLLGEDMRLH
Sbjct:  201 VRDVEESKRVNANVQDRLAQRQTGEAQKEDARCLDAVMVSQHFWPHLLGEDMRLH 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6076.16731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNH8_ECTSI5.140e-2297.87Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A6H5KJM3_9PHAE3.940e-1985.45Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6076contigEcto-sp13_S_contig6076:7444..8555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.4
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D8LNH8
Preferred nameAPC2
Model size141
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG2165@1,KOG2165@2759
Cds size141
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.6818671-CDS-Ecto-sp13_S_contig6076:7443..75381681463846.6818671-CDS-Ecto-sp13_S_contig6076:7443..7538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6076 7444..7538 +
1681463846.6965818-CDS-Ecto-sp13_S_contig6076:8509..85551681463846.6965818-CDS-Ecto-sp13_S_contig6076:8509..8555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6076 8510..8555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6076.16731.1prot_Ecto-sp13_S_contig6076.16731.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6076 7444..8555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6076.16731.1

>prot_Ecto-sp13_S_contig6076.16731.1 ID=prot_Ecto-sp13_S_contig6076.16731.1|Name=mRNA_Ecto-sp13_S_contig6076.16731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
VRDVEESKRVNANVQDRLAQRQTGEAQKEDARQHFWPHLLGEDMRLH
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mRNA from alignment at Ecto-sp13_S_contig6076:7444..8555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6076.16731.1 ID=mRNA_Ecto-sp13_S_contig6076.16731.1|Name=mRNA_Ecto-sp13_S_contig6076.16731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1112bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6076:7444..8555+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGGGACGTTGAAGAATCGAAGCGAGTTAACGCCAACGTGCAGGACCG
ACTCGCCCAACGGCAGACCGGCGAGGCTCAGAAGGAGGACGCCCGGTAAG
CTATGTACCACGCGGTTAGCCGTACCACTATATCCTCGATCCTCGTTTGT
ACCTCTTTTTCAGCACAATGCTGCTGAACCCGCGTTTTTTTTTTTGCGGT
GGACGTGTGTTTTCTCTTGCGGGGCCCCCGTTGAGATCTACGCGGCCTGA
AAAAACGTCGCGGGGGCGGTAATGTGTGTGGGTGCAGTGTAGTATTGATT
TCGGTGCTGCCGGCGCCTTGGGTCAACAATGCCCCTGCCATGTCGCTGTA
GTAGGCATGGAAGTAGATTGCTATACTCAAGTCATGCTTTCTGCTGTGAT
GCAGGCTCTTTACAGGGACCACGGCCGCCGTCTAGTCCTGTGGCTTACGG
GATGAATGTATTTCCTGCTTCCATGTTTGATCGCCAAAACACACACAAAC
ATCTTAGACTTGCCCACGACATCCCCTCGTGGGATCCCGAGTCATGGTCT
TGAAGAAGCATTTGGTGTTTTCAACCTCACTGATACTGACGTCTTTTCAT
TGGTCAGCTGGTTAGCGCGGTCGATGTTTACCACGGAAACACACACACAC
ACACATGGTGTGGAAGAGGGCAAGAGCTTCGAACCACATGACCTTTCCCA
CAACAAACGACGCAGGGCCAGAGAAGAAGTGTCGAAAAGTTGCTGTCAAA
GCAAGGAGGATGATGGTGAAAGCACTCCAAAACGAACTCGAGTACAAGGT
AGCAGCCTTCGTAGACGCGTGCAGTTTTCTTCTGTTGCTTCCGTTTCTGT
CTTTAATCCGGAGAATAGGTGAGCCTTTCCCCCATGCCGCCCCCTCAAGG
GGTCCCAGGTAATGATGGCCTTTAGAAGTGTGTTGTGTTTTCAGCCGCAC
TGAGACCGACGTCTTATCATTGGTCAGCCGGTTAGCGCGGTCGATGCTAA
TAACAGAAACAAACACACACACACACACACACACACACGCAGGTGCCTTG
ATGCTGTCATGGTGAGCCAGCACTTCTGGCCGCACCTCCTCGGAGAGGAC
ATGCGGCTGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6076:7444..8555+

>mRNA_Ecto-sp13_S_contig6076.16731.1 ID=mRNA_Ecto-sp13_S_contig6076.16731.1|Name=mRNA_Ecto-sp13_S_contig6076.16731.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6076:7444..8555+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGGGACGTTGAAGAATCGAAGCGAGTTAACGCCAACGTGCAGGACCG
ACTCGCCCAACGGCAGACCGGCGAGGCTCAGAAGGAGGACGCCCGCCAGC
ACTTCTGGCCGCACCTCCTCGGAGAGGACATGCGGCTGCAC
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