mRNA_Ecto-sp13_S_contig6075.16729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6075.16729.1
Unique NamemRNA_Ecto-sp13_S_contig6075.16729.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: D7G562_ECTSI (Protein kinase domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G562_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.440e-19
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   28 HASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDSSLVPIVKV 159
            HA+HIILQIVSA+RYCHDRGIA+RDLKMENCLY+DSSLVPIVKV
Sbjct:  198 HAAHIILQIVSAVRYCHDRGIAHRDLKMENCLYEDSSLVPIVKV 241
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: A0A835YS30_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS30_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.480e-6
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   28 HASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDSSLVPIVKV 159
            HA++I   +V+AIRYCHDR + +RDLKM+N L++      IVK+
Sbjct:  156 HAAYIASGVVAAIRYCHDRNVVHRDLKMDNVLFESKRPDSIVKI 199
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: A0A5J4WR44_9EUKA (Putative Calcium/calmodulin-dependent protein kinase type 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WR44_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 6.490e-6
Identity = 21/43 (48.84%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   31 ASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDSSLVPIVKV 159
            AS ++LQ+  A++Y HDRGIA+RDLK+EN LY++++    +K+
Sbjct:  294 ASLLMLQLFQAVKYMHDRGIAHRDLKLENILYENTNFYSPIKI 336
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: A0A8J2FKI3_9DINO (Calmodulin n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2FKI3_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 8.920e-6
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   28 HASHIILQIVSAIRYCHDRGIANRDLKMENCLYKD 132
            +A  ++LQ+ SA++YCH  G+ +RDLK+ENCL KD
Sbjct:  203 NAEGLLLQVFSAVQYCHQMGVVHRDLKLENCLLKD 237
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: A0A835ZF12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF12_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.990e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   31 ASHIILQIVSAIRYCHDRGIANRDLKMENCLYK 129
            A+ I+  IV+AIRYCHDRGIA+RDLK++N +Y+
Sbjct:  554 AADIVRNIVNAIRYCHDRGIAHRDLKLDNIVYE 586
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: G3IIJ5_CRIGR (Sperm motility kinase n=2 Tax=Cricetulus griseus TaxID=10029 RepID=G3IIJ5_CRIGR)

HSP 1 Score: 48.1 bits (113), Expect = 1.360e-5
Identity = 19/40 (47.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:   31 ASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDSSLVPI 150
            A HI  Q+V A+ YCHD GIA+RD+K++N L  D   + +
Sbjct:   50 AQHIFTQLVCAVHYCHDNGIAHRDIKLDNILLDDKGNIKL 89
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: F0W4M7_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.640e-5
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   13 RCCPAHASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDSSLVPIV 153
            R C A A+ +  QI SA+RYCH+R I +RDLK+EN L +    V ++
Sbjct:  138 RLCEAKATFVFQQIFSAVRYCHERNIYHRDLKLENVLVRSDLHVKVI 184
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: A0A812USG8_9DINO (Calmodulin n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812USG8_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 1.670e-5
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   22 PAHASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDS 135
            P     +I  +V A+ YCHD G+A+RDLK ENCL K+S
Sbjct:  175 PQEVKLLIRDVVKALAYCHDHGVAHRDLKFENCLIKES 212
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: A0A812WUC3_9DINO (Colgalt1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812WUC3_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 1.670e-5
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   22 PAHASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDS 135
            P     +I  +V A+ YCHD G+A+RDLK ENCL K+S
Sbjct:  129 PQEVKLLIRDVVKALAYCHDHGVAHRDLKFENCLIKES 166
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BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Match: A0A813B9C8_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B9C8_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 1.680e-5
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   22 PAHASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDS 135
            P     +I  +V A+ YCHD G+A+RDLK ENCL K+S
Sbjct:  175 PQEVKLLIRDVVKALAYCHDHGVAHRDLKFENCLIKES 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6075.16729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G562_ECTSI8.440e-1990.91Protein kinase domain containing protein n=1 Tax=E... [more]
A0A835YS30_9STRA3.480e-650.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A5J4WR44_9EUKA6.490e-648.84Putative Calcium/calmodulin-dependent protein kina... [more]
A0A8J2FKI3_9DINO8.920e-654.29Calmodulin n=1 Tax=Amoebophrya sp. A120 TaxID=2202... [more]
A0A835ZF12_9STRA8.990e-663.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
G3IIJ5_CRIGR1.360e-547.50Sperm motility kinase n=2 Tax=Cricetulus griseus T... [more]
F0W4M7_9STRA1.640e-546.81Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
A0A812USG8_9DINO1.670e-552.63Calmodulin n=4 Tax=Symbiodinium TaxID=2949 RepID=A... [more]
A0A812WUC3_9DINO1.670e-552.63Colgalt1 protein n=1 Tax=Symbiodinium necroappeten... [more]
A0A813B9C8_9DINO1.680e-552.63Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6075contigEcto-sp13_S_contig6075:7513..8438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.524132-CDS-Ecto-sp13_S_contig6075:7512..75811681463846.524132-CDS-Ecto-sp13_S_contig6075:7512..7581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6075 7513..7581 -
1681463846.5349877-CDS-Ecto-sp13_S_contig6075:8345..84381681463846.5349877-CDS-Ecto-sp13_S_contig6075:8345..8438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6075 8346..8438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6075.16729.1prot_Ecto-sp13_S_contig6075.16729.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6075 7513..8438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6075.16729.1

>prot_Ecto-sp13_S_contig6075.16729.1 ID=prot_Ecto-sp13_S_contig6075.16729.1|Name=mRNA_Ecto-sp13_S_contig6075.16729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MTRLRCCPAHASHIILQIVSAIRYCHDRGIANRDLKMENCLYKDSSLVPI
VKV*
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mRNA from alignment at Ecto-sp13_S_contig6075:7513..8438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6075.16729.1 ID=mRNA_Ecto-sp13_S_contig6075.16729.1|Name=mRNA_Ecto-sp13_S_contig6075.16729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6075:7513..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACGTTTGCGTTGTTGCCCGGCTCATGCTTCGCACATCATCCTACA
GATTGTGTCCGCCATACGCTATTGTCATGACAGAGGAATTGCGGTGAGTT
TTCCTATGCTGTGCCGTTTAGGCGCACCGGCGTGATTCGCCTTCAAGACA
GCAGCCCAGGCGGGCAGAGAGTGAAAAACCCTGTGAATGAAAGCATGAAA
CGCGTCTCGACAGTTTGTTTTGTTCTGTTCGCAGGGGTAAAAGGTGAAAT
GAAAGGACTTGCCTTGGTTTCTCCCTGGGGTAGACCTTGTACCTAGGCTG
TGGTGCCATGCAACAATCGTTTGTTGGTGGCCCCAGCAGGGTATGTATTT
GCGTGCTCCCGTTATTTCTGGTTGATGTCCATTGTGTTGTAAGACCTGCG
CCTCCCAGGGTAATGAGCTTAATTTTTAGAATGAGTGCTGCTGACTTTTG
GGTGAACCGATATATTTGTGACGCCGAGAGATGCCCTCGTCCGCTAAGAA
GTTTCGGTATAAACTGCAGCCGCAGGTGTCCGTCCTGTTCCGGATAGCCA
GTGTCCTGCAATCCCGTTGCAGGACGTATTTCCGTTCTTTTCCGAGTGTC
GGGGATCTGGTGTCTGTGCGTACAGTAGCCCGCAGTTCGACGGGGTGAAC
GGTGCCAAGGGGCGCTTCCCTTGGCGGCGGAGGGACTGTCTTCCACGTGC
GCTTTCTCTTGGGCCTAATGATCTTGTTCTCACCCACTCCCGAAAGGGCT
GCAGAAGCGCACCCCTGTCATAGGGATAGATAGCCCGCGTGATCCCGCGT
CCGAGTGTGCGATTCTGATCAATGGTCTGTTCGCGTGTGTCGTGTGCGTC
CATCCAGAATCGGGATCTCAAGATGGAAAACTGCCTCTACAAAGACTCCT
CGCTCGTGCCCATCGTCAAGGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6075:7513..8438-

>mRNA_Ecto-sp13_S_contig6075.16729.1 ID=mRNA_Ecto-sp13_S_contig6075.16729.1|Name=mRNA_Ecto-sp13_S_contig6075.16729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6075:7513..8438- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACGTTTGCGTTGTTGCCCGGCTCATGCTTCGCACATCATCCTACA
GATTGTGTCCGCCATACGCTATTGTCATGACAGAGGAATTGCGAATCGGG
ATCTCAAGATGGAAAACTGCCTCTACAAAGACTCCTCGCTCGTGCCCATC
GTCAAGGTTTGA
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