mRNA_Ecto-sp13_S_contig6075.16728.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6075.16728.1
Unique NamemRNA_Ecto-sp13_S_contig6075.16728.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: D7G562_ECTSI (Protein kinase domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G562_ECTSI)

HSP 1 Score: 512 bits (1318), Expect = 2.790e-166
Identity = 267/300 (89.00%), Postives = 277/300 (92.33%), Query Frame = 1 
Query:  790 HYGSGTLTNTSSGRASGKLANRRVRVGAKRWAAGKEGPPDAGGSGAPRGTVEPLDGRPRLDPNGDEGAVDPDALKAAILAV*ADATVSREGLHRMLRAAQRKPFREDSEPISREGKVAHSAAIRARTSGEASLMNGERDRWCMKMNDDWAEEAFKAMDHDYSGSITFTDFVAGCLVEKQVGEAALQTAFARLDLGRSGLTSLDDVELSLGEDFREDEMARNMRANSTREDGQVAYNGFKKCLLRGALPKSQVVTPARSRSASFRVLSKMVSSNDLNKMDVEGGKDLEAEERAVVKAVAFT 1689
            HYGSGTLTNTSSGRASGKLANRRVRVGAKR  AGKEGPPD GGSG PRGT EPLDGRPRLDP GDEG VDPDALKAA+LAV ADATVSREGLHRMLRA QRKPFREDSEP+S EGKVAHSAAI AR+SGEASL++GERDR CMKMNDDWAEE F+AMDHD+SGSITFTDFVAGCLVEKQVGEAALQTAFARLDL RSGL SLDDV+L LGEDFRED+M RNMRA STREDGQVAYN FKKCLL GALP SQVVTPARSRSASFR LSKMVSSNDLNKMDVEGGKDL+AEERAVVKA AFT
Sbjct:  493 HYGSGTLTNTSSGRASGKLANRRVRVGAKRSTAGKEGPPDVGGSGEPRGTAEPLDGRPRLDPTGDEGVVDPDALKAALLAVQADATVSREGLHRMLRAVQRKPFREDSEPVSSEGKVAHSAAISARSSGEASLIHGERDRRCMKMNDDWAEEIFRAMDHDHSGSITFTDFVAGCLVEKQVGEAALQTAFARLDLDRSGLISLDDVKLYLGEDFREDDMVRNMRAISTREDGQVAYNDFKKCLLWGALPNSQVVTPARSRSASFRALSKMVSSNDLNKMDVEGGKDLDAEERAVVKAAAFT 792
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: A0A6H5KUQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ0_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 8.260e-57
Identity = 119/241 (49.38%), Postives = 157/241 (65.15%), Query Frame = 3 
Query:   24 IYHVIDFGLCAEIKDGVTSRAFVGTVRYTA-S*ILKVDGHNVACDLWSLGVMASALVSGQFPWYSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQRAARLMEGGAPLSKASMMAVLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFKDGLQE-RWPVLDDPSW------PNTPPPGGDSSILGTVSTQNGCPLGGG 722
            I  +IDFGLC E+K+G TS AFVGT+ Y +   ++K   H + CD+WS+GVMA ALV G+ P+ ++        IKYS   +  E WKGVS LCRDFI+KCL K PKK +TA  AQ HPW+++AA+ MEG APLSK SM+A++ +Q  + F+K+ +ELVAYSYEP+QIKDLEL F  MDK GKG + L +FK  + E R  +    S       P   P GG+ +    V+  NG P+GGG
Sbjct:  188 IVKIIDFGLCKELKNGETSSAFVGTMTYASPEMVMKNKRHGIECDVWSVGVMAYALVGGRLPFNAEDPAALQHQIKYSQQSYADETWKGVSALCRDFIDKCLHKLPKKRMTAKQAQLHPWIRKAAKQMEG-APLSKDSMLALVNFQKTNLFEKVALELVAYSYEPSQIKDLELRFREMDKTGKGFVTLADFKAAVMELRLSIAQKESGVAAAARPGEKPAGGEPTNPEVVAPSNGRPVGGG 427
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: D7FPG2_ECTSI (Calcium-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPG2_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 8.100e-43
Identity = 85/164 (51.83%), Postives = 114/164 (69.51%), Query Frame = 3 
Query:  120 ILKVDGHNVACDLWSLGVMASALVSGQFPWYSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQRAARLMEGGAPLSKASMMAVLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFKDGLQE 611
            ++K   H + CD+WS+GVM  ALV G+ P+ ++        IKYS   +  E WKGVS LCRDFI+KCL K PKK +TA  AQ HPW+++A + MEG APLSK SM+A++ +Q  + F+K+ +ELVAYSYEP+QIKDLEL F  MDK G+G + L +FK  + E
Sbjct:    2 VMKNKRHGIECDVWSVGVMTYALVGGRLPFNAEDPAALQHQIKYSQQSYADETWKGVSALCRDFIDKCLHKLPKKRMTAKQAQLHPWIRKATKEMEG-APLSKDSMLALVNFQKTNLFEKVALELVAYSYEPSQIKDLELRFREMDKTGRGFVTLADFKAAVME 164
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: A0A835YS30_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS30_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.620e-35
Identity = 81/203 (39.90%), Postives = 117/203 (57.64%), Query Frame = 3 
Query:   18 DDIYHVIDFGLCAEIKDGVT-SRAFVGTVRYTAS*ILKVDGHNVACDLWSLGVMASALVSGQFPWYSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQ------RAARLMEGGA---PLSKASMMAVLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFK 596
            D I  +IDFGL  +    V  +   VGT  Y+A  ILK  GH + CD+WS+GV+  ALV   FP++    D+    IKY+   F    W GVSPLC+DFI++CLVK PKK +TA  AQ+HPWL+       A R   GG     +   +   + ++Q+ + F+K+ ME++AY  +P + + L  +F+ +DK G G + L EFK
Sbjct:  194 DSIVKIIDFGLSEKFGSCVDKAHDLVGTRLYSAPEILKNAGHGLPCDMWSIGVIVFALVGNAFPFFDRDPDILASEIKYARYKFAGPAWDGVSPLCKDFIDRCLVKNPKKRMTAPQAQEHPWLRGGTAWANAIRGKAGGGCDGRMKARTRRCMGEFQDNNLFKKVAMEVIAYILDPEETESLAREFIALDKDGDGVLSLPEFK 396
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: A0A0G4H210_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H210_VITBC)

HSP 1 Score: 109 bits (273), Expect = 6.720e-21
Identity = 65/205 (31.71%), Postives = 108/205 (52.68%), Query Frame = 3 
Query:   33 VIDFGLCAEIKDGVTS-RAFVGTVRYTAS*ILKVDGHNVACDLWSLGVMASALVSGQFPWYSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQRAARLMEGGAPLSKASMMA-----VLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFKDGLQERWPVLD 629
            +IDFG    + +   S R+ VGT+ Y A  +L    +  ACD+WS+GV+A  L+SGQ P+YS ++D   + I      F    W+ VS   +DFI +CL+  P K +T   A  HPWLQ     +    PLS   + +     + K+   +  ++ V+ ++AYS    +I  ++  F   D++G G I+ ++F   ++ER+ + D
Sbjct:  182 LIDFGFSMRLHNVPESTRSIVGTIYYIAPEVLTHQHYTSACDMWSMGVIAYMLMSGQPPFYSKNRDEVIRRISKGHYSFEGRVWEDVSAEGKDFIRRCLLLNPVKRLTVEQAIHHPWLQG----LHNTNPLSSREIPSDTLTNMKKFVRATHLKRAVLTVLAYSLSSDEIDSIQNIFQAFDREGCGTIKFDDFCAIMKERFEISD 382
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: A0A0V0QWH0_PSEPJ (Protein kinase-like domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QWH0_PSEPJ)

HSP 1 Score: 102 bits (254), Expect = 5.110e-19
Identity = 65/198 (32.83%), Postives = 105/198 (53.03%), Query Frame = 3 
Query:   33 VIDFGLCAEIKDGVTSRAFVGTVRYTAS*ILKVDGHNVACDLWSLGVMASALVSGQFPWYSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQRAAR----LMEGGAPLSKASMMAVLK-YQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFKDGLQE 611
            +IDFGL  +++    +   VGT  Y A  IL    +++ACD+WS+GV+   L+SG  P+  ++++     I++        +W  VSP  +D I+K L K PKK +TA+ A QHPW +   R     +        A ++ +LK +Q  S F++ VM++        +I+ L+ +F  +DK   G IRLEE +  L E
Sbjct:  179 IIDFGLSNKLQKKFDTM--VGTPYYVAPEILAQKPYDLACDMWSVGVILYILLSGIPPFVGNNRNEMFYKIEHCLYTLTSSEWTRVSPSAKDLIKKLLEKNPKKRLTASQALQHPWFENYERDRRVSLNSNDDKVDARILNMLKNFQTVSKFKREVMKVFVNQINGKEIQILKENFQKIDKDNTGLIRLEELQQALDE 374
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: A0A7S2GZH2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GZH2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.380e-18
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 3 
Query:   33 VIDFGLCAEIKDGVTSRAFVGTVRYTAS*ILKVDGHNVACDLWSLGVMASALVSGQFPW-----YSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQRAARLMEGGAPLSKASMMAVLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFKDGL 605
            +IDFGL      G      VGT+ YTA+  +    ++  CD+WS+GV+A  L+SG+ P+       D + +   +        P++ W   S   ++FI + LV  P    TAA AQ+ PWL R+ R  +  +P    S+++   +QN    +K++ E+++Y+  P Q+K L  +F  +DK   GEI L++ K  L
Sbjct:  223 IIDFGLSKHFIPGERQHENVGTL-YTAAPEVLRKNYDERCDVWSIGVIAYVLLSGEAPFGGCYGEKDRRPIITNITSGIYHFEPEDTWANRSQEAKEFIRRLLVTDPNDRPTAAEAQKLPWLLRSRRQSQSLSPAVVRSLISFKNFQND--LRKLLCEVLSYTLLPCQVKSLRREFSKLDKDATGEISLQDLKCAL 415
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: A0A7S2GZG6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GZG6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.740e-18
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 3 
Query:   33 VIDFGLCAEIKDGVTSRAFVGTVRYTAS*ILKVDGHNVACDLWSLGVMASALVSGQFPW-----YSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQRAARLMEGGAPLSKASMMAVLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFKDGL 605
            +IDFGL      G      VGT+ YTA+  +    ++  CD+WS+GV+A  L+SG+ P+       D + +   +        P++ W   S   ++FI + LV  P    TAA AQ+ PWL R+ R  +  +P    S+++   +QN    +K++ E+++Y+  P Q+K L  +F  +DK   GEI L++ K  L
Sbjct:  242 IIDFGLSKHFIPGERQHENVGTL-YTAAPEVLRKNYDERCDVWSIGVIAYVLLSGEAPFGGCYGEKDRRPIITNITSGIYHFEPEDTWANRSQEAKEFIRRLLVTDPNDRPTAAEAQKLPWLLRSRRQSQSLSPAVVRSLISFKNFQND--LRKLLCEVLSYTLLPCQVKSLRREFSKLDKDATGEISLQDLKCAL 434
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: A0A8J8T9Q2_HALGN (Protein kinase domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T9Q2_HALGN)

HSP 1 Score: 91.3 bits (225), Expect = 2.920e-16
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 3 
Query:   39 DFGLCAEIKDGVTSRAFVGTVRYTAS*ILKVDGHNVACDLWSLGVMASALVSGQFPWYSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQ 386
            DFGL   +     S    GT+ Y A  +L+ + ++ +CDLWSLG +  AL+SG  P+   S+    +M  +SPL F    WK VSP+ +DFI + L+K P + +T   A QHPW++
Sbjct:  190 DFGLAKFLGPTERSTEPFGTLGYVAPEVLRKEPYSFSCDLWSLGCITYALLSGSLPFDHQSQSETIKMTIHSPLIFDLPCWKEVSPVAKDFISQLLIKDPTQRMTIEKALQHPWIK 305
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BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Match: C5LM50_PERM5 (Calcium-dependent protein kinase 1, putative n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LM50_PERM5)

HSP 1 Score: 92.8 bits (229), Expect = 7.410e-16
Identity = 56/194 (28.87%), Postives = 90/194 (46.39%), Query Frame = 3 
Query:   33 VIDFGLCAEIKDGVTSRAFVGTVRYTAS*ILKVDGHNVACDLWSLGVMASALVSGQFPWYSDSKDVCCQMIKYSPL*FPKEKWKGVSPLCRDFIEKCLVKKPKKIITAA*AQQHPWLQRAARLMEGGAPLSKASMMAVLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLLMDKQGKGEIRLEEFKDGLQER 614
            +IDFG       GV      GT  Y A  +LK   H+  CD+WSLGV+   L+SG  P+    +    + ++ +   F    W  VS   ++FI + L K P +  +   A Q PWL++  R  +    L  + +  +  +      ++  + L+A +    Q++ LE  F ++DK G G I LEE    L E+
Sbjct:  189 LIDFGFSQRFTSGVPLTRVCGTCFYVAPEVLK-GTHDQKCDIWSLGVITYMLLSGMPPFTGRDEQAILRSVRAAKYSFSASVWDDVSQEAKEFIMRLLTKDPARRPSCKEALQDPWLRKTWR-GDQEPSLDTSVLTNLYHFAAAGVMKRAALGLIAMTMSTPQVRQLEEQFRVLDKDGNGVITLEELTTALTEK 380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6075.16728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G562_ECTSI2.790e-16689.00Protein kinase domain containing protein n=1 Tax=E... [more]
A0A6H5KUQ0_9PHAE8.260e-5749.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPG2_ECTSI8.100e-4351.83Calcium-dependent protein kinase n=1 Tax=Ectocarpu... [more]
A0A835YS30_9STRA6.620e-3539.90Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A0G4H210_VITBC6.720e-2131.71Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0V0QWH0_PSEPJ5.110e-1932.83Protein kinase-like domain n=1 Tax=Pseudocohnilemb... [more]
A0A7S2GZH2_9STRA3.380e-1831.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2GZG6_9STRA3.740e-1831.63Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A8J8T9Q2_HALGN2.920e-1638.79Protein kinase domain-containing protein n=1 Tax=H... [more]
C5LM50_PERM57.410e-1628.87Calcium-dependent protein kinase 1, putative n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6075contigEcto-sp13_S_contig6075:587..7279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2593
Hectar predicted targeting categoryother localisation
Exons9
Cds size570
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6075.16728.1prot_Ecto-sp13_S_contig6075.16728.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6075 4406..6420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.3573253-UTR-Ecto-sp13_S_contig6075:586..15991681463846.3573253-UTR-Ecto-sp13_S_contig6075:586..1599Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6075 587..1599 -
1681463846.3711402-UTR-Ecto-sp13_S_contig6075:2535..26301681463846.3711402-UTR-Ecto-sp13_S_contig6075:2535..2630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6075 2536..2630 -
1681463846.3854315-UTR-Ecto-sp13_S_contig6075:3334..34431681463846.3854315-UTR-Ecto-sp13_S_contig6075:3334..3443Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6075 3335..3443 -
1681463846.3969476-UTR-Ecto-sp13_S_contig6075:3829..39691681463846.3969476-UTR-Ecto-sp13_S_contig6075:3829..3969Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6075 3830..3969 -
1681463846.407063-UTR-Ecto-sp13_S_contig6075:4140..44051681463846.407063-UTR-Ecto-sp13_S_contig6075:4140..4405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6075 4141..4405 -
1681463846.4665246-UTR-Ecto-sp13_S_contig6075:6420..65461681463846.4665246-UTR-Ecto-sp13_S_contig6075:6420..6546Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6075 6421..6546 -
1681463846.483065-UTR-Ecto-sp13_S_contig6075:7004..72791681463846.483065-UTR-Ecto-sp13_S_contig6075:7004..7279Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6075 7005..7279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.4166582-CDS-Ecto-sp13_S_contig6075:4405..47171681463846.4166582-CDS-Ecto-sp13_S_contig6075:4405..4717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6075 4406..4717 -
1681463846.426973-CDS-Ecto-sp13_S_contig6075:5001..51091681463846.426973-CDS-Ecto-sp13_S_contig6075:5001..5109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6075 5002..5109 -
1681463846.439865-CDS-Ecto-sp13_S_contig6075:5493..55661681463846.439865-CDS-Ecto-sp13_S_contig6075:5493..5566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6075 5494..5566 -
1681463846.4535723-CDS-Ecto-sp13_S_contig6075:6343..64201681463846.4535723-CDS-Ecto-sp13_S_contig6075:6343..6420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6075 6344..6420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6075.16728.1

>prot_Ecto-sp13_S_contig6075.16728.1 ID=prot_Ecto-sp13_S_contig6075.16728.1|Name=mRNA_Ecto-sp13_S_contig6075.16728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MEGGAPLSKASMMAVLKYQNGSTFQKIVMELVAYSYEPTQIKDLELDFLL
MDKQGKGEIRLEEFKDGLQERWPVLDDPSWPNTPPPGGDSSILGTVSTQN
GCPLGGGNNLGGSRSRHQDEASMVLSTSRPLRQRHPHQHLQRQGKRKACQ
QKSTRGGEAVGRRQGRSTRRRRQWSTARHRRASRWAATP*
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mRNA from alignment at Ecto-sp13_S_contig6075:587..7279-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6075.16728.1 ID=mRNA_Ecto-sp13_S_contig6075.16728.1|Name=mRNA_Ecto-sp13_S_contig6075.16728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6075:587..7279- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCACTGTTGCGATCGTGACGATATCTACCACGTGATCGACTTCGGGTTG
TGCGCAGAGATAAAGGACGGAGTGACGTCACGCGCCTTCGTTGGCACAGT
GCGCTATACTGCGTCATAAATCCTTAAGGTTGACGGGCACAACGTCGCCT
GTGACCTATGGTCGCTGGGGGTGATGGCGTCCGCTCTGGTTAGCGGACAG
TTCCCGTGGTACTCCGACTCAAAGGATGTGTGCTGTCAGATGATCAAGTA
CTCCCCTCTCTAGTTTCCGAAAGAGGTGAGCGAGTGGCCATTTTGACCCA
CTAAATTAATGTCTGAAAAGCGGGCGGTACATACCAGGTTGAAGCGTCGT
TCAAGCTGTAACAGCAGGCTTTCGGTTTTTTGCCTAGTTGGAAATGACGT
ATCAATTGCCGTGAGCGAACGTGACAGGTACGTGGAGCCAAGACGGAGCG
CTACCGCATCCGAACTTGTTATGAAGCGTAAACGACCACGTTATGCGCGC
ACAGAATATCAGGTGTGTAGTCACAGACTTGGCACAGTGCTTGTGTTGTG
GATTTCGTGTGACTGCCCATGCCTGCCTTTTGTTCAAGTGTTCAGAGCGT
GCACTAGTCTACTTCGCGTGGCAACACGAAGCCGATTGGTGGTAGACCAT
TTTTCCTGCCGTTCTGTTGAGCCCGGTTCCTTGCCCCGATTTTACTTGCG
CGTGCGCACGTATGCACTTCGGGGGGCCCGCAGAAATGGAAGGGTGTGTC
ACCCTTGTGCCGTGATTTCATCGAGAAGTGTCTCGTGAAAAAGCCGAAAA
AGATTATCACCGCAGCGTAGGCTCAGCAGCACCCTTGGCTGCAAAGAGCC
GCCCGTTTGATGGAGGGGGGAGCGCCCCTGTCGAAGGCGTCGATGATGGC
CGTGCTCAAGTACCAAAATGGAAGCACTTTCCAGAAGTGAGATTAAGAAC
GTTTACACGGGGTTTATATTGTTGGGGGAGAAGAGCTGGCGACAATATTT
CTCGGTTGTCTTTCAAGATACGGGCAGGGGGGTGCTGTGCGTTTCTCTAT
TGTTGGGATGGAGTGCGGTGACTGGCTGACCAATGCAAAGTACCAGTCTC
AGCAAGTAAGGCCAACAGCGGGAAACACCCCCAAAGGCCATGAGCTGTAC
TGTGTGTGTTTAAGTGTGTGTGTTTACTATCGACCGTACTAACTGGCTAA
GCAATGATTAGACCTCAGGCTCAGTGCGGCTAAAAGTGGCAAGTGGTTCA
AAAGGCACTTATCTGGGATCCCGTGGGCGGGGGGGTGCAAGGCTATTCTC
CAGATTTGAGAATGCGTTCCGATATCTGTTTCTGTTCATTAGCATCGACC
ACACCAACTGGCTGACCAATGGAAAGCCGCCAGTCTCAGCGGGTGAAAAC
CAAGGTCAATGAAAGGGGACCAACCTTGGAAGAAATTGCGTTGCTCGGAA
AGCCACGCCATATTTAAAACAACACGAAACTGTAGATGGTATGCTGCGAC
GGGCGTGGTTGTTAGAACAATGACGTTGTGAGCACAAAGGAATTTCCTCC
GTTGGTACTGAACAGATGGGCGAGCGGGATGTTTTGTGCTGCTCATGCGC
GCTCTTGTTTAATGAGGATTTAACCCCCATCCATCTGATCTGTCGCTGAC
TTCAACCTCGTGACTTCCTCGCTGTCGCTTGCTCCATCCCTTGATTTTGC
CGTAACGCCAAAGGATCGTGATGGAACTCGTGGCTTACTCTTACGAGCCG
ACGCAAATCAAGGACCTCGAGTTGGACTTCCTGCTGGTAAGTACGAACAC
GCAGCAGTGATGTCGCACACACGCCCCACCGCCTCGATGAAGTCTCTGCC
GCGGTGCCCCCTACGATACTCGCAGTTCCGCCACCGTGCTGGTGATGTCG
TTCTTCTATTCGCTACTTTCCTGACCCAATTTGGTGCTACAGTTCGCAAG
AGGTCGGCGTGTAGGCAGACGTAACAGTCCGGCCTATGAGGAATAATATA
TCTCGTAGTGTGGTTGATGAGGCACTAGATTCGTTCCATCTGGTTGATGC
CGATTACACTCTAAGCCATGGCCATCGTGCTCAGTTGGCACTAGCTGTCG
TTGCCGCGTGGTCACGTAACGGTTCTGACAGAGTGCCACACTCGTTGTTT
CACCCCCCGGTCGCTGGTAGATGGACAAGCAGGGCAAGGGAGAGATCCGC
CTTGAAGAGTTCAAGGATGGTCTGCAGGAGCGATGGCCCGTGCTAGATGA
CCCTTCGTGGCCTAACACTCCTCCACCTGTCGTGGATGTCGATGTTAAAT
GACATCATGTCTCGCGAAGGTACCAGGCCTTTGTCACGACCGCGCCTCGT
CACTGCGGACCGGGTGTCTGCTTTCTTCCAGCGCCGTTGATAGTTTATAG
TGGTGTCTTGGCAAGAATGGAATACAGCCCCTTTGTTCCTTCATCGTGCT
GGACTCCCTCCCCCCACGTTCCCGTGTGCGTGCCCCCTTCGATACCGTGT
ACGTTGTTGTGGTTCTCTGACCCGTTCCCTTCGCCTACTTCCTTCCTCCA
TGTTACATACAGGGCGGCGATTCCAGCATCCTCGGGACTGTCAGCACCCA
GAACGGATGCCCACTAGGTGGGGGCAACAACCTCGGTGGATCTCGAAGTC
GGCACCAAGATGAAGCTTCCATGGTGCTGTCGACATCACGGCCATTACGG
CAGCGGCACCCTCACCAACACCTCCAGCGGCAGGGCAAGCGGAAAGCTTG
CCAACAGAAGAGTACGCGTGGGGGCGAAGCGGTGGGCCGCCGGCAAGGAA
GGTCCACCCGACGCCGGCGGCAGTGGAGCACCGCGCGGCACCGTAGAGCC
TCTCGATGGGCGGCCACGCCTTGACCCTAACGGTGATGAGGGTGCAGTAG
ATCCCGATGCCCTGAAGGCGGCCATTCTGGCGGTGTAGGCAGACGCGACG
GTGTCGAGAGAGGGGCTTCACAGGATGCTAAGGGCGGCACAACGCAAGCC
TTTCCGGGAAGACTCGGAGCCCATCTCTCGCGAGGGCAAGGTTGCACACA
GCGCCGCTATACGCGCTCGAACCTCGGGAGAGGCATCACTCATGAACGGC
GAGCGCGATCGCTGGTGCATGAAGATGAACGACGACTGGGTGAGAGACCA
GCAACTGAGAGATAGAGAGAGAAAAAAAACGAAAGATGGAGAGGAATGAA
GAGCTTGAAAGACACAAACAGTGGTTGCAGTCCTGCAGTCTCTCTTTGCC
ATGTTGTGCTTTTGACGCTAGCACTTGATCTGCGCATGCTACGTCCTACG
ATGTTGACAGGCCGAAGAAGCCTTCAAGGCTATGGACCACGACTATTCCG
GTAGTATCACGTTTACAGATTTTGTTGCGGGCTGCCTCGTCGAGAAGCAG
GTCGGAGAGGCTGCCCTTCAAACGGCGTTCGCCAGGCTCGACCTCGGCAG
GTAATGGACAATCAAAGTGTTTTGAGTGTCTCGGTCGACCGTGCTTCCAT
CCTCTTTTTCTCGGGTATGGTGTTTATCCAATAGGAGATGAAGCCACTCC
TATCATGTCTTGGTCCCTGATTACTCGCCCGTATACCATGTGACTGATGT
CTCAGACGGACTGTAACGAAACGTCTGCTGGGCGACTCTTCTTCAGGTGC
TCACGAGCTGTCGATATGGATTCGCACAGGATGGTGGAGGCTTTTCTTGA
ACGTGCATATAGCTTCTTCAACGCCGAAATCGTGCAAGTAACTCGCATTT
TACCTCGCCTGTTTCCCACACAACCTCCAACATTGTTATTATTTGATTTG
GCATCTGGCGCAAATTTCATTTTGCTGCCCGCGTAGGTCAGGACTCACCT
CGCTGGATGACGTCGAGCTCTCCCTCGGGGAAGACTTCAGAGAGGACGAG
ATGGCACGCAACATGAGGGCCAATTCTACACGGGAGGACGGCCAGGTACT
GTACTACACATCGAATGTTGCACACGTCGACTCCGCAATGCAAAAAGTAG
GATTCAATGGCAGCTTCTCGAGCATGTTCGTGGACAATGCTACGCTTGGT
CCAAACCCAGTCTACCTAATGTAGAACAGCAGGGTATATACCCCCCAAAA
ATGTCACAAGTGTTGAAGAGAAGCACCTCGGCTATTATTGCAACTATTAG
ATTCGTCGAGAGTTGGCGGACGGCTCCGAGCAGATGCTTTACTTATCACC
AGAGCACGCTACGGGCGTAGCAGCCTTTCGCGAGGGTGACAGTTTTTGCG
AAAATGGCGATGCACTCGGGGCTTTGAATGAGCCTTCCACAGGCCGCGCA
TGTTTCCGAACCTTTCGGCGGAAACCCGCCAAACGCCGGCCTGCGTGTTA
CTGGCTCTCCTGCGGTTGCCGAGAAATTTTACGCAGAAGAAACGGACGGC
GACCATACCCCAGCGCGTGTTGGGATGGATGCTTCCACATTTGGACTTAC
ACCGTTGTCAAGGTAGTCGAGTTGTACAACCGAGAAACCGCCGTTCCGCG
ACGCTCTTGTGAGGGCGTGGTATCATCTGAAAAAACCAAGGGCATCGCAG
CATCCAGTCGTAGGGCTTCTTTCCCACCCAACCCCGTTCCCCCTCTCAGC
TGATGCCTCCCCTGTCGCACCTTACTCCGCTCCGCGGGTCCCCCTGAAGG
TGGCTTACAATGGCTTCAAGAAATGTTTGTTGCGGGGAGCCCTGCCGAAA
TCTCAAGTGGTTACACCGGCCAGGTCCAGGAGCGCCTCCTTCAGGTATGA
AAACCGCGTTGCGTTCTGGGTTGCTGCTTTTTTCAAGAGTGCGGCTTCTT
TATGAAGTACGTGCATCTCCTTTTTTGCTTTTACAATGTGCTTTGCGTCT
TTCAAGCTGTATCTCCACCTCTACTGCCATGCCCCCCTGATGACTTCTCG
TTCATGAGCTCCCGCATGCGCGATCGGCATCAGATCGATTATGGTGTTTA
CCTACTTGGGAGATTGGTGGGATGTTCCATACGGGATTGGAAGGGTTGTC
ATGCCCACAGGCCCCCTTCGTTGAGTGAAATAGTTGCCGTGCGGTGACAA
CATCACGAATGCCATGTGGAAAGTTCGTAAGATAGACTGCCAGATGGCCA
GCTCGAATGGGGTGGCGTATTCTGTATTCAATGGCCATGAATGCCGTGGC
TTTGTTGTGCTTGTGCGCGGAAGTGGTGGCTCATGAGCGGTGCAGTGAAG
CGCCTTCAAGTGAAAATTCGCTCTTGACATGCACTCGTGACAAAAGCTGT
AGCAAATTCACCGGGGGGTATATTTAGTACAGAGTACAGGAGCGGCATTA
CAGTCGCTCGCCGCGCTCTTGTTGCGTTTAGAGCAAGGCGAAGGATCCGT
GGTGCCAGAATACGTTATTTTTGCCCTTTCTTCGACTCCGCCCGCGGCGA
GAGATATGGCACAGCGATCACTTGTTGGGTGTTGTTTTTTATAGATTCAG
GGACGTCTAAAACGTCAGAGGCTTCGGCGAAGGAAATTCCACCGAAATAC
CGCCCGGTAGTAATGAGTCTAACGCATCCCAACCCACCTCAGTGGGCCAC
TCTTTCGGAACGCCTTCGCGATAAATTCAGTTTGTGAGGAAATGGAACAG
GGAGGGGGTGCGCAGACCCTACTGACCCTCTCCCAATCCGTTGTCTGTCC
GCTCTTTCTTCCTGGGGTTGCCGCTGGCAGGGTGTTGTCCAAAATGGTTT
CGTCCAACGACCTCAACAAAATGGACGTCGAGGGGGGAAAGGACCTGGAG
GCCGAAGAAAGGGCCGTCGTCAAGGCAGTCGCTTTCACGTAACACACCCT
GAGTCGAGGGGTTTTCTGCGGGGATGGGAGTGGCGCAGCCCCACCAGGAC
GGAATCGCCGCGGCGCGATCTAGGAACTTTTTTTGAGGTGCTCTGTGCAT
GCCGTGCTTTTTCGTTTCTCTGTGCCATGTGTGGTCTCTGTTGTTTAGGT
GGAATGGCCTACCCCCTGTGTTCCATTGAAAGTTAAAGTTGTTCGTCGGT
CAACACGGTGGTGTGCTGTTGTTTGTGTGTTTTAGTGTTGTATTGCGTCA
GCGTGCGGGACAATACCCAGTGCTGCTGCCGAGACGGCGTGCTGTGTTTT
CTGGTACCGTACGATGGGTGGATGGGGGAATAAGCGTGCTTGTCGTCTTC
GGCGCCTGGTGTCCGAAGCAGGGTTGGGCTTGACGTTGACAAGATAATAT
ATAGACAGCGAGTGCCTCATGCGGGCATGCGGGGGCAAGACGCAACTGCG
TCTCGCTGTATTTGTGCCTTGCCGATGCTGCGCCGAGGAAAGCTCATACC
AGAGTGGTGGTGTGTTGTGTTGGTGGAGTATTTTTGTTTCAAGCGAACAG
CGCCGAGCTAGTTGGAGATACTCATTTGTAAACTGTGGCCGACGGGGAAA
CGCTCAACGGTGGGGAATGCTGTTTGTACAAGTTCGAGTTTGTTTGTAGA
TATGACAACGATATTTTGCATGTGTTTGGTTACGTGGTCTTTTTGGTTTT
GTTTGTGGCGTGATTTTTTTGGTGTCGTTGGTTTTTATGTTTGACAAGAC
GTACGTACATGAACTGTGCGTCACAGGTAAACGACTTTTGGGAAGAAACT
ATCACCACGCTAGAATGAATAGTATGCCGAGTGTTAGTCTTCAGGCTTTG
CAAAGAAGCGCACATGTAGTCCATGGGGGAAAAATGTTTGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6075:587..7279-

>mRNA_Ecto-sp13_S_contig6075.16728.1 ID=mRNA_Ecto-sp13_S_contig6075.16728.1|Name=mRNA_Ecto-sp13_S_contig6075.16728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6075:587..7279- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGGGGAGCGCCCCTGTCGAAGGCGTCGATGATGGCCGTGCTCAA
GTACCAAAATGGAAGCACTTTCCAGAAGATCGTGATGGAACTCGTGGCTT
ACTCTTACGAGCCGACGCAAATCAAGGACCTCGAGTTGGACTTCCTGCTG
ATGGACAAGCAGGGCAAGGGAGAGATCCGCCTTGAAGAGTTCAAGGATGG
TCTGCAGGAGCGATGGCCCGTGCTAGATGACCCTTCGTGGCCTAACACTC
CTCCACCTGGCGGCGATTCCAGCATCCTCGGGACTGTCAGCACCCAGAAC
GGATGCCCACTAGGTGGGGGCAACAACCTCGGTGGATCTCGAAGTCGGCA
CCAAGATGAAGCTTCCATGGTGCTGTCGACATCACGGCCATTACGGCAGC
GGCACCCTCACCAACACCTCCAGCGGCAGGGCAAGCGGAAAGCTTGCCAA
CAGAAGAGTACGCGTGGGGGCGAAGCGGTGGGCCGCCGGCAAGGAAGGTC
CACCCGACGCCGGCGGCAGTGGAGCACCGCGCGGCACCGTAGAGCCTCTC
GATGGGCGGCCACGCCTTGA
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