mRNA_Ecto-sp13_S_contig60741.16727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60741.16727.1
Unique NamemRNA_Ecto-sp13_S_contig60741.16727.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: D7G154_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G154_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.380e-22
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            M  +AVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM
Sbjct:    1 MFGQAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 43
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: A0A6H5KW20_9PHAE (UBC core domain-containing protein n=5 Tax=Ochrophyta TaxID=2696291 RepID=A0A6H5KW20_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.950e-21
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:   10 KAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            +AVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM
Sbjct:   37 QAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 76
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: B8CAB3_THAPS (Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillariophyta TaxID=2836 RepID=B8CAB3_THAPS)

HSP 1 Score: 84.0 bits (206), Expect = 1.980e-19
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            ML +AVIFGPDDTPWEGGTFKL+LEF+EDYPNK PSVRFLT+M
Sbjct:   34 MLWQAVIFGPDDTPWEGGTFKLVLEFTEDYPNKAPSVRFLTKM 76
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: A0A7S0FQ92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQ92_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.780e-19
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            ML +AVIFGPDDTPWEGGTFKL+LEF+EDYPNK P+VRFLT+M
Sbjct:   35 MLWQAVIFGPDDTPWEGGTFKLVLEFTEDYPNKAPNVRFLTKM 77
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: A0A1Z5KB46_FISSO (Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB46_FISSO)

HSP 1 Score: 82.4 bits (202), Expect = 3.940e-19
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            ML +AVIFGPDDTPWEGGTFKL+LEF+EDYPNK P VRFLT+M
Sbjct:    6 MLWQAVIFGPDDTPWEGGTFKLVLEFTEDYPNKAPQVRFLTKM 48
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: A0A7S1UWA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWA9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.940e-19
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            ML +AVIFGPDDTPWEGGTFKL+LEF+EDYPNK P VRFLT+M
Sbjct:   56 MLWQAVIFGPDDTPWEGGTFKLVLEFTEDYPNKAPQVRFLTKM 98
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: A0A812WBD6_SYMMI (UBC2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WBD6_SYMMI)

HSP 1 Score: 83.2 bits (204), Expect = 4.260e-19
Identity = 34/43 (79.07%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            M+ +A++FGPDDTPWEGGTFKLL EFSEDYPNKPP+V+FLT+M
Sbjct:   34 MVWQAIVFGPDDTPWEGGTFKLLAEFSEDYPNKPPAVKFLTKM 76
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: A0A059CZA9_EUCGR (UBC core domain-containing protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A059CZA9_EUCGR)

HSP 1 Score: 82.0 bits (201), Expect = 4.300e-19
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            ML  AVIFGPDDTPW+GGTFKL L+FSEDYPNKPP+VRF++RM
Sbjct:   34 MLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRM 76
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: A0A0D2T8P5_GOSRA (UBC core domain-containing protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2T8P5_GOSRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.950e-19
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            ML  AVIFGPDDTPW+GGTFKL L+F+EDYPNKPP+VRF++RM
Sbjct:   34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFISRM 76
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BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Match: UPI000C1CECC4 (ubiquitin-conjugating enzyme E2 2-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CECC4)

HSP 1 Score: 81.3 bits (199), Expect = 5.220e-19
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM 129
            ML  AVIFGPDDTPW+GGTFKL L+F+EDYPNKPP+VRF++RM
Sbjct:   34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFISRM 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60741.16727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G154_ECTSI4.380e-2293.02UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KW20_9PHAE5.950e-2197.50UBC core domain-containing protein n=5 Tax=Ochroph... [more]
B8CAB3_THAPS1.980e-1986.05Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillario... [more]
A0A7S0FQ92_9STRA2.780e-1983.72Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A1Z5KB46_FISSO3.940e-1983.72Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulif... [more]
A0A7S1UWA9_9STRA3.940e-1983.72Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A812WBD6_SYMMI4.260e-1979.07UBC2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A059CZA9_EUCGR4.300e-1981.40UBC core domain-containing protein n=2 Tax=Pentape... [more]
A0A0D2T8P5_GOSRA4.950e-1979.07UBC core domain-containing protein n=1 Tax=Gossypi... [more]
UPI000C1CECC45.220e-1979.07ubiquitin-conjugating enzyme E2 2-like n=1 Tax=Ole... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60741contigEcto-sp13_S_contig60741:673..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score90.5
Seed ortholog evalue2.1e-16
Seed eggNOG ortholog2880.D7G154
Model size132
KEGG koko:K10573
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031371,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0033503,GO:0033554,GO:0034641,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons1
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0419@2759
EC2.3.2.23
Cds size132
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.324039-CDS-Ecto-sp13_S_contig60741:672..8041681463846.324039-CDS-Ecto-sp13_S_contig60741:672..804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60741 673..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60741.16727.1prot_Ecto-sp13_S_contig60741.16727.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60741 673..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60741.16727.1

>prot_Ecto-sp13_S_contig60741.16727.1 ID=prot_Ecto-sp13_S_contig60741.16727.1|Name=mRNA_Ecto-sp13_S_contig60741.16727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MLPKAVIFGPDDTPWEGGTFKLLLEFSEDYPNKPPSVRFLTRM*
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mRNA from alignment at Ecto-sp13_S_contig60741:673..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60741.16727.1 ID=mRNA_Ecto-sp13_S_contig60741.16727.1|Name=mRNA_Ecto-sp13_S_contig60741.16727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60741:673..804- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTACCAAAGGCTGTGATATTCGGACCGGACGATACGCCGTGGGAAGG
GGGGACGTTCAAGCTCCTGCTTGAGTTTTCCGAGGACTACCCCAACAAGC
CGCCGTCGGTCCGGTTCCTCACGCGCATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60741:673..804-

>mRNA_Ecto-sp13_S_contig60741.16727.1 ID=mRNA_Ecto-sp13_S_contig60741.16727.1|Name=mRNA_Ecto-sp13_S_contig60741.16727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60741:673..804- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTACCAAAGGCTGTGATATTCGGACCGGACGATACGCCGTGGGAAGG
GGGGACGTTCAAGCTCCTGCTTGAGTTTTCCGAGGACTACCCCAACAAGC
CGCCGTCGGTCCGGTTCCTCACGCGCATGTGA
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