mRNA_Ecto-sp13_S_contig60736.16724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60736.16724.1
Unique NamemRNA_Ecto-sp13_S_contig60736.16724.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60736.16724.1 vs. uniprot
Match: D7FML8_ECTSI (Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FML8_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.810e-11
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   76 MPFSTLRAGQSLKRPRPLSHHNRSAASLGSNSKFEQHGQEEGLDSSTAVAIVGAG 240
            MP S+LRAG  LKRPRPLSHH+ SAAS  +NS   Q GQEEGLD+ST VAIVGAG
Sbjct:    1 MPVSSLRAG--LKRPRPLSHHHGSAASF-TNSNSRQQGQEEGLDASTPVAIVGAG 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60736.16724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FML8_ECTSI3.810e-1172.73Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60736contigEcto-sp13_S_contig60736:556..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.6
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D7FML8
Model size244
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
Cds size240
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463846.0748181-CDS-Ecto-sp13_S_contig60736:555..7951681463846.0748181-CDS-Ecto-sp13_S_contig60736:555..795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60736 556..795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60736.16724.1prot_Ecto-sp13_S_contig60736.16724.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60736 556..795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60736.16724.1

>prot_Ecto-sp13_S_contig60736.16724.1 ID=prot_Ecto-sp13_S_contig60736.16724.1|Name=mRNA_Ecto-sp13_S_contig60736.16724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
HPTGCASFHTSTMLARCVSLGGSLRMPFSTLRAGQSLKRPRPLSHHNRSA
ASLGSNSKFEQHGQEEGLDSSTAVAIVGAG
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mRNA from alignment at Ecto-sp13_S_contig60736:556..797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60736.16724.1 ID=mRNA_Ecto-sp13_S_contig60736.16724.1|Name=mRNA_Ecto-sp13_S_contig60736.16724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60736:556..797+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCCACTGGGTGTGCCTCCTTCCATACCAGTACCATGCTGGCGAGGTG
TGTATCCCTGGGTGGAAGCCTGCGCATGCCATTTTCTACTCTTCGAGCCG
GCCAAAGCTTGAAGCGTCCACGCCCGCTTAGTCATCACAACCGTTCTGCC
GCATCATTGGGTTCCAACAGCAAATTTGAGCAGCACGGGCAGGAGGAAGG
CCTTGACTCTTCTACTGCAGTGGCTATCGTCGGCGCTGGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60736:556..797+

>mRNA_Ecto-sp13_S_contig60736.16724.1 ID=mRNA_Ecto-sp13_S_contig60736.16724.1|Name=mRNA_Ecto-sp13_S_contig60736.16724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60736:556..797+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCCACTGGGTGTGCCTCCTTCCATACCAGTACCATGCTGGCGAGGTG
TGTATCCCTGGGTGGAAGCCTGCGCATGCCATTTTCTACTCTTCGAGCCG
GCCAAAGCTTGAAGCGTCCACGCCCGCTTAGTCATCACAACCGTTCTGCC
GCATCATTGGGTTCCAACAGCAAATTTGAGCAGCACGGGCAGGAGGAAGG
CCTTGACTCTTCTACTGCAGTGGCTATCGTCGGCGCTGGG
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