mRNA_Ecto-sp13_S_contig1196.1673.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1196.1673.1
Unique NamemRNA_Ecto-sp13_S_contig1196.1673.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1196.1673.1 vs. uniprot
Match: D8LFF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF8_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.510e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDMRIRNPPQAAVDRMLANPATRSALERANADMAAAASK 219
            MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDMRIRNPPQAAVDRMLANPATRSALERANADMAAAASK
Sbjct:    1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDMRIRNPPQAAVDRMLANPATRSALERANADMAAAASK 73
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BLAST of mRNA_Ecto-sp13_S_contig1196.1673.1 vs. uniprot
Match: A0A6H5K0K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.460e-11
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = -1 
Query:   90 MSAFALSNADLVAGFASILSTAACGGLRMRMSRFNSM 200
            MSAFALSNADLVAGFASILSTAACGG+RMRMSRFNS+
Sbjct:    1 MSAFALSNADLVAGFASILSTAACGGVRMRMSRFNSL 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1196.1673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFF8_ECTSI2.510e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0K0_9PHAE1.460e-1194.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1196contigEcto-sp13_S_contig1196:8306..11702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size746
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.7396772-UTR-Ecto-sp13_S_contig1196:8305..83971681462633.7396772-UTR-Ecto-sp13_S_contig1196:8305..8397Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1196 8306..8397 +
1681462633.750258-UTR-Ecto-sp13_S_contig1196:11048..112541681462633.750258-UTR-Ecto-sp13_S_contig1196:11048..11254Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1196 11049..11254 +
1681462633.7692025-UTR-Ecto-sp13_S_contig1196:11686..117021681462633.7692025-UTR-Ecto-sp13_S_contig1196:11686..11702Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1196 11687..11702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.7599537-CDS-Ecto-sp13_S_contig1196:11254..116861681462633.7599537-CDS-Ecto-sp13_S_contig1196:11254..11686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1196 11255..11686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1196.1673.1prot_Ecto-sp13_S_contig1196.1673.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1196 11255..11686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1196.1673.1

>prot_Ecto-sp13_S_contig1196.1673.1 ID=prot_Ecto-sp13_S_contig1196.1673.1|Name=mRNA_Ecto-sp13_S_contig1196.1673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
MCRNIYSSGWVRLYCHFPAPSEVCYMLLPGRFESGRTMVFGRSTVRRTVF
CPVKQGGAWAKLADGRHCMQRVEGGSSNGTERLLITSSEAAFGSSWGGGR
GALSSPPSVAVSLSDDKCCITLPTLPCRFATASRVAFVLSAQQ*
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mRNA from alignment at Ecto-sp13_S_contig1196:8306..11702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1196.1673.1 ID=mRNA_Ecto-sp13_S_contig1196.1673.1|Name=mRNA_Ecto-sp13_S_contig1196.1673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1196:8306..11702+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGCGTATCCGGGCTCATGTCGTTGACGAACTACCTGACGGTCGG
CCGCACGGACAGGCTCATCGGCCTGGATGACTTCGATTACATGTAAGCCC
CCGCGCTAGTGTGTGTGTATGTCGGTTATCGGCATTGACCGCGGCAACCA
GCTGGCCAATGAAAAGGCGTCACATGCACACAAACGTCAGCCTCGGTGCG
GTTGAAAGCAGAAACCTTTTCCTTGAGGCGATGATATGGGATTTCGTCCG
TGTTTTTGTGTGTGTGTATCAAGTGGCGTCGACCGCGGTAGCCAGCTGAC
CATTCAAACGTTAGTCTCATTGCGGCCATGAACGGGAAATGTTTCTCAAG
GTCGTGATTTAGGGCCCCGTTAGTAGGGCGTCATGGGGTAGTTTGAGTCC
TTGTGATCTTTGTCTTTGTTGCTGGCATCGACCGCGCTAACCGGCTGGCC
TATGCAAAGAAGTCAGTCTCGGTGTGGAGACCACCTTCACAAAGGTGCAA
TCTCCCCAACGTCTGTCGACGACGATTCCCTCTTTTGGTAATGGCGTCGA
CGAAGAGATGTCAGAGTGCCGTCCTCATTGGCGCTCAACGAAAGTTTGAT
CGCGGGATGGCAGCGCAGAAAAGTTCCTGTGAAAAAACACAGCGCGGAAT
GAAAAGCAGACACTCTGACATCTCTTCGTCGACGCCATCGTGAAAAGAGG
GAATCGTCCGTGTGTTTGTATATCGTCACCATAATCGTTGAATTTCAAGG
AAGCGCCGTCCGCCTCCGACTAAACTCGGAGGATGTTTATGTTTTGGAGT
ACGGCAAACGACATGACAGGGTATCTATACCCTGGGGCCGAAAAGCGACC
GTTAGTTTGGTACATATCTTCTGTTTGACAGCGTAAAATGAGCCCAGCTG
ATTGGTCAACGTCCAATTTCATCGCCCCGTGTCCGAAGTAGCCCGGGATA
CACTCTGCCACGGCAACTTTTCTCCAGGATTGTACCCTGATTGCGGTAAT
GTACCCCGGTCTGACGGGAAATGAAACGCGATTTCGCCGGCCATATTCTC
TGCTGTAACCCATTTCCAACCCAACCAAAGGATACCAGCCATAAGTTATT
CCCGCCCGAAGCAAACAATGGCTGACACACAGCAGACTTCCGTTGGGAAA
GCAATCGACGTGTTGTGAGGTACGCGAGATACGTCACGCTCAGAACACGA
CCGATCCAGCATGGTTGACAGCAGCATGGCTGACACATAATCTCACGTCT
GCGGATGGACGTGTGTAGGCGACCAAGCGGAAAGCCACACACACACGCCG
ACAGAATTATCACGGGAGTTTGGAGCGTACCCATCGTAAAAAGCACAGGA
GATCGAACGTGCTGCAAAATACTACAGAGTTGTGCTGGAAGGGTGAAGGC
TGCACGAGCTTCCTTCTGAACCACACCCCGATGATGTGCTGTGCTGGGTG
CGGAAAAGCACGGTCGGCGTAGATGTGTGTTGGCTTGGGATGACGAGGCG
GCTAATTAGTTTTACGACACTCGAACCTTCTACGATGGTGATTAGGACGG
CGTGCGGGCTTGCCTAGCCTTCAGCTTCTCCGGCACCACGACCCCGCCTC
CCCGCATGTATTATCCGATGTGGCAACCTTACCGCTTTCAACCATGTTGG
GTCGATCGCGTTCCGAGTGTGAGCTCGACCTCACAACACGTCGATTGCTT
TCCCAACGGCAAGGTGCTGTGTACCAGCCATTGTTTTGTTAGGAGCCGGA
AGAACTTATGGTTTATATCCTGTGGTCGGATCAGAAATTGATTCCTGCGG
AGGAAAGGGCCCAAGGGATCCCATATCCGGTCAGATGAGGGCACATTGCC
GAAATCAGGTCATAGTTCCAGAGAAAGTGGGTCTGGCACGGTGTATGCCT
TGCTATTTTGGACCCGGAAAGGTGAAAGTGGACGTCGACCAATCAGCTGG
GCTCGTTTGACGCCGTCGAAAAAGTATGTACCCAGCTTAGTGGAGTGGTG
CCTGGACCAGAAGTCGCTGAAGCCATGATGCCGCCCCGCACAATAAAAGA
TGTCGTTTTTGAGCAGGGCACATACCCTGCTGTTTCTGTTGCTCTTCGAA
GTGCACATGTCTGAGACGAAAACTCCGACATGTATGTTGGGCGCCGTCTA
CCTAGCTGAGAGGCAGTTTTTCAAGTCCGCATGATGTGCAACGGTGAAGG
CTCCAACGATGATTGCCGGGAATACCACAAAACGCGGAAACAAGATGTTG
GGACGAGGAGAAGCCGCACAAGTCTGGACGAGGCTTCATGGAACTGAACA
CGCCGTGTCTGAATAGCGTTCAACGCCGAGAGAGACGTCGCAGAGGAACT
GCCTTGAGCACGCAGCGAACAATGCTTACGGCCAAGAGAATAGCAGCTCA
ACGAGGCAACCGGGTCATTTCTTGGGCAGAAAGGGTGGCTGGCTATTTTT
GAATTTCAGGCAACCAGGGGGTAGCAACTACTGCTGGCTTTCGGTAGTAC
CATGTCCGACGTGCATGCTACAGAAGGTCCTCACGTAGCCACTGGTATGG
GTCCAGTCTTCCTGTTGCTCTCTTTCCCATGCCCCACACACACCACCACC
ACTTGTCGAGCACGCAGTCCTTTTTCTCTACCTTCTCTATATATTCAAAC
AGCGGGTGTATTTTGGTCGTTTTCCTGTTGGTTTCACGCATGCACCTTTT
GCGGTGGTTCTTTGTTCCGTTTGCTTTTTGTTTGTTTTTTCAGGCTGTTG
AACCGCGACATGCGCATCCGCAACCCCCCGCAAGCCGCGGTGGACAGGAT
GCTGGCGAACCCGGCGACGAGGTCTGCATTGGAGAGGGCAAACGCCGACA
TGGCAGCAGCCGCAAGCAAGGTGATTTCAGAAATATCTACAACGTACGAA
CGAAGAAAGACTCTTCACCCGTTCGAGACTTGAAACGAAGTCGAAAGACA
TGTGTAGAAATATTTACAGCAGTGGGTGGGTGAGATTGTATTGTCATTTC
CCGGCGCCTTCGGAAGTGTGCTATATGCTGTTACCCGGGCGCTTCGAATC
AGGACGAACCATGGTTTTCGGCAGGAGCACAGTACGGCGCACCGTTTTTT
GCCCAGTCAAACAGGGAGGTGCGTGGGCCAAGCTTGCCGATGGTAGGCAT
TGTATGCAGCGCGTTGAGGGGGGGTCCTCCAACGGTACGGAACGTTTGCT
CATAACGTCTTCGGAAGCGGCGTTCGGTTCATCGTGGGGCGGCGGGAGGG
GAGCTCTTTCGAGTCCTCCGTCCGTAGCCGTGTCTCTGAGCGACGACAAA
TGCTGTATTACCCTACCTACCCTACCCTGCCGTTTTGCAACCGCTTCTCG
TGTGGCGTTTGTGTTGTCGGCGCAGCAATAACGGTTACTTTCGCAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1196:8306..11702+

>mRNA_Ecto-sp13_S_contig1196.1673.1 ID=mRNA_Ecto-sp13_S_contig1196.1673.1|Name=mRNA_Ecto-sp13_S_contig1196.1673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1196:8306..11702+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTAGAAATATTTACAGCAGTGGGTGGGTGAGATTGTATTGTCATTT
CCCGGCGCCTTCGGAAGTGTGCTATATGCTGTTACCCGGGCGCTTCGAAT
CAGGACGAACCATGGTTTTCGGCAGGAGCACAGTACGGCGCACCGTTTTT
TGCCCAGTCAAACAGGGAGGTGCGTGGGCCAAGCTTGCCGATGGTAGGCA
TTGTATGCAGCGCGTTGAGGGGGGGTCCTCCAACGGTACGGAACGTTTGC
TCATAACGTCTTCGGAAGCGGCGTTCGGTTCATCGTGGGGCGGCGGGAGG
GGAGCTCTTTCGAGTCCTCCGTCCGTAGCCGTGTCTCTGAGCGACGACAA
ATGCTGTATTACCCTACCTACCCTACCCTGCCGTTTTGCAACCGCTTCTC
GTGTGGCGTTTGTGTTGTCGGCGCAGCAATAA
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