mRNA_Ecto-sp13_S_contig6067.16717.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6067.16717.1
Unique NamemRNA_Ecto-sp13_S_contig6067.16717.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6067.16717.1 vs. uniprot
Match: A0A6H5KIV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV9_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.040e-12
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  700 MSTQNTDIGRTFPRPSLEL*LCLDVWEEIQEIPRTEFA 813
            M+TQNTD+GRTFPRP++E  LCLDVWE IQEIPRTE A
Sbjct:    1 MNTQNTDVGRTFPRPNVEFLLCLDVWEGIQEIPRTEIA 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6067.16717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIV9_9PHAE8.040e-1278.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6067contigEcto-sp13_S_contig6067:5169..6049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size881
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463845.1946332-UTR-Ecto-sp13_S_contig6067:5168..53021681463845.1946332-UTR-Ecto-sp13_S_contig6067:5168..5302Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6067 5169..5302 +
1681463845.2236278-UTR-Ecto-sp13_S_contig6067:5854..60491681463845.2236278-UTR-Ecto-sp13_S_contig6067:5854..6049Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6067 5855..6049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463845.2106166-CDS-Ecto-sp13_S_contig6067:5302..58541681463845.2106166-CDS-Ecto-sp13_S_contig6067:5302..5854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6067 5303..5854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6067.16717.1prot_Ecto-sp13_S_contig6067.16717.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6067 5303..5854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6067.16717.1

>prot_Ecto-sp13_S_contig6067.16717.1 ID=prot_Ecto-sp13_S_contig6067.16717.1|Name=mRNA_Ecto-sp13_S_contig6067.16717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
MKAHLPAQGRFMPGDCCLIVIHFRPLGKRKRPVPRSPLGRGWKVTSVRPV
SRNIHISLMVCCSSMFWFPLTRIGDFALERIGKGSPSVVCSSPRLCMPAL
VPWTVLFSGHSGRTNVDSSPDVIQYLATKTREHSISCGMEKTNGHLREAG
FRKNNMRIQQNPTYGIRPSCNFIPPAVYMSKNT*
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mRNA from alignment at Ecto-sp13_S_contig6067:5169..6049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6067.16717.1 ID=mRNA_Ecto-sp13_S_contig6067.16717.1|Name=mRNA_Ecto-sp13_S_contig6067.16717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=881bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6067:5169..6049+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACTCTTTTTTTTATGGTGGAATGCGTTGCCGCGGATGGGAACTTACCT
GACAAGGAATGTGGTCCTCGTTTGACGGTTCTCAGAAATGAGCTACAGTC
ACCGTTACGTCTTGGTTGACCTCATCGCTCACGTATGAAAGCCCACCTTC
CGGCACAGGGCAGGTTTATGCCAGGAGACTGTTGCCTCATTGTGATTCAT
TTTCGACCGTTGGGCAAGCGCAAGAGGCCAGTCCCCCGCTCCCCGCTTGG
TAGGGGTTGGAAGGTCACAAGCGTCCGTCCAGTATCCCGCAATATCCACA
TCAGCTTGATGGTCTGCTGTTCATCTATGTTTTGGTTCCCACTTACTCGG
ATTGGCGACTTTGCTTTGGAACGTATCGGCAAAGGTTCTCCCTCCGTTGT
TTGTTCGTCCCCAAGGCTTTGCATGCCCGCCCTTGTTCCGTGGACGGTGT
TGTTCAGCGGGCATTCGGGCAGAACAAACGTCGATTCATCGCCTGATGTG
ATTCAGTACCTAGCTACAAAAACTCGAGAGCACAGCATCTCATGTGGGAT
GGAAAAGACGAACGGTCACTTAAGGGAGGCCGGCTTCAGAAAGAACAATA
TGCGGATACAACAGAACCCAACGTACGGTATACGCCCGTCATGCAATTTT
ATCCCCCCAGCCGTGTACATGTCAAAAAACACGTGAAGTATTCGAGAAAA
TGAGTACTCAGAACACGGACATAGGGCGAACATTTCCCCGCCCGAGTCTG
GAGTTGTAGTTGTGTTTGGATGTATGGGAAGAGATTCAAGAGATCCCGCG
AACGGAATTTGCTTTACAGTGAGCCAGTCGCACGAGGTATATGACTCATG
TTTGTCGCCGACAATTCATGACGCGTCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6067:5169..6049+

>mRNA_Ecto-sp13_S_contig6067.16717.1 ID=mRNA_Ecto-sp13_S_contig6067.16717.1|Name=mRNA_Ecto-sp13_S_contig6067.16717.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6067:5169..6049+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGCCCACCTTCCGGCACAGGGCAGGTTTATGCCAGGAGACTGTTG
CCTCATTGTGATTCATTTTCGACCGTTGGGCAAGCGCAAGAGGCCAGTCC
CCCGCTCCCCGCTTGGTAGGGGTTGGAAGGTCACAAGCGTCCGTCCAGTA
TCCCGCAATATCCACATCAGCTTGATGGTCTGCTGTTCATCTATGTTTTG
GTTCCCACTTACTCGGATTGGCGACTTTGCTTTGGAACGTATCGGCAAAG
GTTCTCCCTCCGTTGTTTGTTCGTCCCCAAGGCTTTGCATGCCCGCCCTT
GTTCCGTGGACGGTGTTGTTCAGCGGGCATTCGGGCAGAACAAACGTCGA
TTCATCGCCTGATGTGATTCAGTACCTAGCTACAAAAACTCGAGAGCACA
GCATCTCATGTGGGATGGAAAAGACGAACGGTCACTTAAGGGAGGCCGGC
TTCAGAAAGAACAATATGCGGATACAACAGAACCCAACGTACGGTATACG
CCCGTCATGCAATTTTATCCCCCCAGCCGTGTACATGTCAAAAAACACGT
GA
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