mRNA_Ecto-sp13_S_contig6065.16715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6065.16715.1
Unique NamemRNA_Ecto-sp13_S_contig6065.16715.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6065.16715.1 vs. uniprot
Match: D7G6I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I0_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.270e-74
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 1 
Query:    1 MECDNPAVVSTLARKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSAGVTANHPLLPPPEKLFGFTYVSFFIEKTTFPASKHNAVMDLTTPTPNVGAFSAMTGTFNFDAPPSVGGRAGGSGVRET 384
            MECDNPAVVSTLARKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSAGVT N+PLLPPPEKLFGFTYVSFFIEKTTFPASKHNAVMDLTTPTPNVGAFSAMTGTFNFDAP SVGGRAGG+GVR+T
Sbjct: 1585 MECDNPAVVSTLARKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSAGVTTNNPLLPPPEKLFGFTYVSFFIEKTTFPASKHNAVMDLTTPTPNVGAFSAMTGTFNFDAPRSVGGRAGGTGVRDT 1712
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BLAST of mRNA_Ecto-sp13_S_contig6065.16715.1 vs. uniprot
Match: A0A6H5L704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L704_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.320e-72
Identity = 118/128 (92.19%), Postives = 122/128 (95.31%), Query Frame = 1 
Query:    1 MECDNPAVVSTLARKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSAGVTANHPLLPPPEKLFGFTYVSFFIEKTTFPASKHNAVMDLTTPTPNVGAFSAMTGTFNFDAPPSVGGRAGGSGVRET 384
            ME DNPAVV TL RKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSAGVTAN+PLL PPEKLFGFTYVSFFIEKTTFP+SKHNAVMDLTTPTPNVGAFSAMT TFNFDAPPSVGGR GG+GVR+T
Sbjct:  314 MEYDNPAVVFTLERKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSAGVTANNPLLSPPEKLFGFTYVSFFIEKTTFPSSKHNAVMDLTTPTPNVGAFSAMTKTFNFDAPPSVGGRPGGTGVRDT 441
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BLAST of mRNA_Ecto-sp13_S_contig6065.16715.1 vs. uniprot
Match: A0A835ZQ73_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ73_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.860e-10
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   13 NPAVVSTLARKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSAGVTANHPLLPPPEKLFGFTYVSFFIEKTT 237
            N A  + LA KGGD++L RP DG+SV+  +++  + + L+ Q      T   PLL PPEKLFGFTY+S  +E+TT
Sbjct: 1586 NAAAAAVLAWKGGDLSLARPADGKSVV-DIVKGERELALLMQ-KHFHPTERAPLLAPPEKLFGFTYLSLLLERTT 1658
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6065.16715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6I0_ECTSI1.270e-7496.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L704_9PHAE1.320e-7292.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZQ73_9STRA5.860e-1046.67P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6065contigEcto-sp13_S_contig6065:3897..6693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score250.0
Seed ortholog evalue6e-64
Seed eggNOG ortholog2880.D7G6I0
Model size385
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Cds size384
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463845.06219-CDS-Ecto-sp13_S_contig6065:3896..39861681463845.06219-CDS-Ecto-sp13_S_contig6065:3896..3986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6065 3897..3986 +
1681463845.0814807-CDS-Ecto-sp13_S_contig6065:5292..55361681463845.0814807-CDS-Ecto-sp13_S_contig6065:5292..5536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6065 5293..5536 +
1681463845.092758-CDS-Ecto-sp13_S_contig6065:6643..66931681463845.092758-CDS-Ecto-sp13_S_contig6065:6643..6693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6065 6644..6693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6065.16715.1prot_Ecto-sp13_S_contig6065.16715.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6065 3897..6693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6065.16715.1

>prot_Ecto-sp13_S_contig6065.16715.1 ID=prot_Ecto-sp13_S_contig6065.16715.1|Name=mRNA_Ecto-sp13_S_contig6065.16715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MECDNPAVVSTLARKGGDVNLKRPCDGRSVITQVLEQGQGMDLIEQVSSA
GVTANHPLLPPPEKLFGFTYVSFFIEKTTFPASKHNAVMDLTTPTPNVGA
FSAMTGTFNFDAPPSVGGRAGGSGVRET
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mRNA from alignment at Ecto-sp13_S_contig6065:3897..6693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6065.16715.1 ID=mRNA_Ecto-sp13_S_contig6065.16715.1|Name=mRNA_Ecto-sp13_S_contig6065.16715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2797bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6065:3897..6693+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTGCGACAATCCGGCGGTCGTGTCTACGCTTGCGCGGAAGGGGGG
GGACGTCAACCTCAAGCGCCCCTGCGACGGGCGGTCCGTGGTACGAACGA
AAAATAGCGCATTCGAAGGAGTTGTTCAAACCAAAACTCAATTGTACCGC
CACACACGCCGTGAAGTCGGAGCGCGAGAACACGTTGTGACACCATCCTA
TGAGCTTACCGGAGCTATGATTTTGCTCGCGTCGCGGCAGTGGCATGGTC
GATTGCTGCATCAATGGGTTGGGCTACGAGCCTTGGAGTGGTTAGTAGCC
ACAGGGACGACGGTCAAATGTTTAAGTTCACTGGATGGCCAGCGTCGACT
TTTCCATGGCATAAAACCCGTCCCTCCTACAGTTGCATTTTCGGCCAACG
GTGGACGCGCACTGAAGACTACGTAGCTGCATGATACTGAGTGCCACTTC
AACCCCCTTACGGATGTCTGGCGTTTGTTGGTAACAACGTTGTACAATAT
CGCTACACTGCACTACACCCGGGCAACGACTTTCCAGATTTGCCGGTAAC
CACCGAAAGAAGTCGAGTTATATCGTGTTTTACGGGGGGCGAAGTGATAG
CTCCGCGCGAGGCGGGGCATCACACCATCCTGTTCGCACATACGCAAGCA
CCCACGGTTCCGCTGACGGGCACAAATAATCACGGCTGCCGCTGGAAAAT
GGTCGCGACGGAACACAGTTGTATTGAACTTGTATTATGCACTCACTAAA
GCGTGCGGAAAGCACCGAAATCCGCGTCGCAATCGATTGACAACAAGGTT
GGACCTTGTTCTACTCATCCCAAGACACCTCACTGTACTTGGTACTAGAA
CCGAGGCGGACCGATCGGCGAGCACGCCTGCTGGCTTGAATGGGATGCCC
AAGTCTATTGCAGTGTCGTCTCGGCGTTCATGGTCAGAGTGTTTGTTGAG
TTCTTCCCATCTATCCACAGGCATGACTACACAAGCAATACCAAAAGATG
TGGTCGTTTCAAAATGGAAGCGAGGACACCATCGAGCAAATATCGCCCAG
AGGTGGTGACACCCTAAATGTTTCATATTTGTAGATTCCCTACGGCTCAA
CACCGACAGTCCCCAAGTCTACCTCCGTGCTTGAGCTTTGAAAACGCACA
TTTTCCATGGGGCAGCAGTGGTCCCGGCATAAGCCGGCGAAACCGTCTGG
CACAGAGGGAATATTCAAGTTGTTTCATGCTCTGAAAAATGCCGGCCGCC
TGCTACAATGCCGGTTCAAAAGGCTGGCACCTACAACACGGCATTATTTC
CGGGACCACTCTCGTTCGCCCATCAAACCCTGTGCGCCGATTGAAACATA
CTCCCTACTTCTACCCTCCCCGTACACACCGACCCGTGCTCGCCAGATCA
CCCAGGTGTTGGAACAAGGACAGGGAATGGACCTCATCGAGCAGGTGTCA
TCCGCAGGGGTGACGGCGAATCACCCACTCCTACCCCCCCCCGAGAAACT
GTTCGGCTTCACGTACGTGTCGTTCTTCATCGAGAAGACCACTTTCCCAG
CCTCGAAGCACAACGCCGTCATGGACCTCACCACGCCCACCCCAAACGTC
GGAGCGTTCTCGGCCATGACGGGAACCTTCAACTTTGACGGTAAGCGTAC
AGTACACGGCACACTGGGAGACTTCGGCATGGGGGTTGCCTTGTTGCTGT
ATTGTAGGCGTTGAAGTGCGCAGCGACAGGGCCATCAGTAGAAACCGAAG
AAAATTGGCGTTTGCCGTATCCGCATCGGTGCCGAAAGCTGATGGCAGTA
GGTTTGGCAATGAAGGACAGGCTCTGGCGGTTAGGCCATATTTGTTCTCT
TGCCTCCTGTACATTAATTGGTGGCCACTGGTTTAGACAAGCACAGTTGT
GTCGCCGCAGTACATGTGCCCGACCCTTGGTAAAATCAACATATCGATCC
CAAGCAATAAACGTGTATGAGTGGTCTCCGCAATTTCCCCTCTTACCCAG
TACATGTGTTGGAAAGCTGACCGACGGGGTGGCAAAACCAATTTGCTGAA
CATGATCCATCAGCCCCGCTGACGAAAGCAACGATGACAAACGTCAACCA
CACCGACAACTGGGGGGCGAAGCAGCGGTAGCAAGCCCATTCCGCCACCA
AGATGTAGGGCGCCATGGCGAAACGGAACAAAAAGACGCTGCGTCTGTCA
GTCGAGATCCGTTCGACATGCTAATGGCCATAGGGACCCGTAATTTTCGA
AAGGTCACTTGATGTTCTGCAAGTTGGTTTCGTCCATGAACGTTTCGTCC
CTCACTTGAGAGCAATAACGCCCGATGGATGCGCATGCTCACATAAGTGC
AGAACGAATCGTGGGCGGCGTCACAAGATCCCCCCGTATTCAGCTGAAGG
AATACTCATCTCTAGAGAGTGAGTCCCGCGTGCCAAGGCCCTTCATTGGT
CCACAGACGCGGCGGTACCACTCGCACGAAGCGATTCGTCCGTCCCGAAA
GGGGGATCGGGATATCAAGTATATGTACGTATCGGATACATGGTGCCACT
TCAAGACGTGAACGGTTTCAGGGGGGAGCGTGAGCTTTTATTTCCGGTCG
TCATTCGCTGTGGAAATAACTCGATTTGAGTCCAGCTCTCATGCATCGGA
AACAGCTCCTCTTCTCTCTGTGCTGAAAGCTCGAAGTCAGAATTGGGCTC
TCAGATAAAGTTTTTAAATATCTCCTTCCTTCGTATGTTTTCTCAAGCCC
CCCCCAGCGTAGGAGGACGAGCGGGTGGCTCGGGAGTGCGCGAAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6065:3897..6693+

>mRNA_Ecto-sp13_S_contig6065.16715.1 ID=mRNA_Ecto-sp13_S_contig6065.16715.1|Name=mRNA_Ecto-sp13_S_contig6065.16715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6065:3897..6693+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTGCGACAATCCGGCGGTCGTGTCTACGCTTGCGCGGAAGGGGGG
GGACGTCAACCTCAAGCGCCCCTGCGACGGGCGGTCCGTGATCACCCAGG
TGTTGGAACAAGGACAGGGAATGGACCTCATCGAGCAGGTGTCATCCGCA
GGGGTGACGGCGAATCACCCACTCCTACCCCCCCCCGAGAAACTGTTCGG
CTTCACGTACGTGTCGTTCTTCATCGAGAAGACCACTTTCCCAGCCTCGA
AGCACAACGCCGTCATGGACCTCACCACGCCCACCCCAAACGTCGGAGCG
TTCTCGGCCATGACGGGAACCTTCAACTTTGACGCCCCCCCCAGCGTAGG
AGGACGAGCGGGTGGCTCGGGAGTGCGCGAAACG
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