mRNA_Ecto-sp13_S_contig6064.16714.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6064.16714.1
Unique NamemRNA_Ecto-sp13_S_contig6064.16714.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6064.16714.1 vs. uniprot
Match: D8LCQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ7_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 2.550e-82
Identity = 165/202 (81.68%), Postives = 174/202 (86.14%), Query Frame = 1 
Query:    1 AITKDTGSPGHREIPEKGVLSSLGTADGPAKEAGAENEKMSALSNAERELAVVTESGNAPTREERRSGGRGRVRGADGPGGXXXXXXXXXXXXXEGFAVGVVEMLRERAAAASLAAEVARKDGDRARVDLEAFKERVASVEELLSKSKAAEFDSASRVSEAEQNCARLRMQLQARERQIAELREISQGNLNRAKHRRKQCAW 606
            AITKDTG PGHREI EK VLSSLGT + PAKEA  ENEKM ALSNAERELAV T+SGNAPTRE RRSGG G V GADG G      XXXXX   EGFAVG VE+LRERAAAASLAAEVARKDGDRARV+LEAFKERVASVEELLSKSKA   DSAS+VSEAEQ CARLRMQLQARERQIA+L+E+S+GNLNRAKHRRKQCAW
Sbjct:  454 AITKDTGYPGHREILEKSVLSSLGTVEAPAKEAVEENEKMRALSNAERELAVETQSGNAPTREGRRSGGCGGVLGADGLG------XXXXXGNDEGFAVGAVEILRERAAAASLAAEVARKDGDRARVELEAFKERVASVEELLSKSKATAADSASKVSEAEQTCARLRMQLQARERQIAQLQELSRGNLNRAKHRRKQCAW 649
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BLAST of mRNA_Ecto-sp13_S_contig6064.16714.1 vs. uniprot
Match: A0A6H5KWY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWY2_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 8.300e-81
Identity = 158/202 (78.22%), Postives = 166/202 (82.18%), Query Frame = 1 
Query:    1 AITKDTGSPGHREIPEKGVLSSLGTADGPAKEAGAENEKMSALSNAERELAVVTESGNAPTREERRSGGRGRVRGADGPGGXXXXXXXXXXXXXEGFAVGVVEMLRERAAAASLAAEVARKDGDRARVDLEAFKERVASVEELLSKSKAAEFDSASRVSEAEQNCARLRMQLQARERQIAELREISQGNLNRAKHRRKQCAW 606
            AITK TG PGHREIPE GV++SL T DGPAKEAGAENE+MSALSNAERELAV TESGN P RE RRS  R  V GADG                EGFAV VV+MLRERA AASLAAEVARK+GDRARV+LEA KERVASVEELLSKSKAAE DSASRVSEAEQ CARLRMQL ARERQIAELREISQGNL+RAKHRRKQC+W
Sbjct:  411 AITKGTGYPGHREIPEMGVMTSLETVDGPAKEAGAENEEMSALSNAERELAVETESGNVPKREGRRSSDRRDVGGADG------LRDGDGGGNEEGFAVRVVQMLRERATAASLAAEVARKEGDRARVELEALKERVASVEELLSKSKAAEVDSASRVSEAEQTCARLRMQLLARERQIAELREISQGNLDRAKHRRKQCSW 606
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6064.16714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCQ7_ECTSI2.550e-8281.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWY2_9PHAE8.300e-8178.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6064contigEcto-sp13_S_contig6064:2..2446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size609
Hectar predicted targeting categoryother localisation
Exons4
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463844.9801111-CDS-Ecto-sp13_S_contig6064:1..1181681463844.9801111-CDS-Ecto-sp13_S_contig6064:1..118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6064 2..118 +
1681463844.9985971-CDS-Ecto-sp13_S_contig6064:389..7061681463844.9985971-CDS-Ecto-sp13_S_contig6064:389..706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6064 390..706 +
1681463845.012264-CDS-Ecto-sp13_S_contig6064:1632..17321681463845.012264-CDS-Ecto-sp13_S_contig6064:1632..1732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6064 1633..1732 +
1681463845.0302787-CDS-Ecto-sp13_S_contig6064:2371..24461681463845.0302787-CDS-Ecto-sp13_S_contig6064:2371..2446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6064 2372..2446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6064.16714.1prot_Ecto-sp13_S_contig6064.16714.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6064 2..2446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6064.16714.1

>prot_Ecto-sp13_S_contig6064.16714.1 ID=prot_Ecto-sp13_S_contig6064.16714.1|Name=mRNA_Ecto-sp13_S_contig6064.16714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
AITKDTGSPGHREIPEKGVLSSLGTADGPAKEAGAENEKMSALSNAEREL
AVVTESGNAPTREERRSGGRGRVRGADGPGGGAGRGGGNGGGNDEGFAVG
VVEMLRERAAAASLAAEVARKDGDRARVDLEAFKERVASVEELLSKSKAA
EFDSASRVSEAEQNCARLRMQLQARERQIAELREISQGNLNRAKHRRKQC
AW*
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mRNA from alignment at Ecto-sp13_S_contig6064:2..2446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6064.16714.1 ID=mRNA_Ecto-sp13_S_contig6064.16714.1|Name=mRNA_Ecto-sp13_S_contig6064.16714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2445bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6064:2..2446+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATCACCAAAGACACAGGTTCTCCTGGCCATCGGGAAATCCCGGAAAA
GGGTGTTCTGAGCAGCCTGGGAACTGCTGACGGCCCGGCGAAGGAGGCGG
GTGCAGAAAATGAAAAGGTAGGAAAAAAACAAACCAGTTCGAGGATGGAG
ATCACAATCTGACCGCGAACGTTTTGTGGTAAATGTGAATCGATAGGTCG
CGCCTGCTTCGAGCAACCATGTTCGGCATTGATCGGGGGACATGCGTGCT
TGAAGCTATGCTCGACGAACGTGCGTCGCGTCACTTTGCACGAGTGGCAG
CAGCAGCAAACAAAGGGATCAACCCAATAAAATACCCCCCAAAACCCCCT
TACACCCTTTGTGTCCCTGCCTTCCCGCTTTCACTAAGATGAGTGCATTG
TCCAACGCTGAGCGAGAGCTCGCCGTTGTAACGGAATCTGGAAACGCGCC
TACGCGGGAGGAACGTCGAAGTGGTGGCCGTGGTCGTGTTCGTGGTGCTG
ACGGTCCTGGTGGTGGCGCTGGTCGTGGTGGTGGTAATGGCGGCGGTAAC
GACGAGGGCTTCGCAGTAGGGGTGGTAGAGATGCTGAGGGAGAGAGCCGC
GGCAGCGTCCCTGGCGGCCGAGGTGGCCAGGAAGGACGGGGACCGGGCCA
GGGTCGACCTCGAAGCCTTCAAGGAGAGGGTGGCGTCGGTCGAGGAGCTA
TTGAGGTTCGAGTTGTACATGCTGGTCGGGTATTTCTCTTCCTTTGGATC
ATTGTTGGTGTCTGCTCTGTTGTACTGCACTTTTTTTCTCGGTTGCTAAA
CAGAGAAAAACGAAAAAAATATGTTGTACCGCAACCTCTATATCACCCAT
AAATAACGTATCGTCCTGAAAAACACAGTCTTCCCACCCGAGTACTAGAT
TGCCGCAGTGCTTGGATAGGTCGGTCTTCGCTGCCCTCTCATTTTGGTTT
GCCCGCAAGCAAGTCTGAGTGGATTGATCAAACGCTGTAGGGGCGCGGCT
TGTTGCCATGTGTTGGGGTTGTTGCCCGTGGGTCGTTCGTTCGACTTCTT
GCCAAATTTAAGTGCTTTCTCTCTCTCCTGCGCCAGGTAGAGGGTGACGG
GTGGTAATAGGGTTGGCTGCAGTGCAAGATCAAAGGCACGGACTGTTTTC
GGCGTGCGTGGTGTGCTTCAATTGTAGAGAAACCCATTGATGCAGGGCGC
TTGTCCTTTGGCTAAGCTGACGAACTTCATGAGGGCTTCACTACGTTTGA
CGTCCATGCGGTGGTCATTTTTTGCCGTGTGTGGAGTTTGGCGTAGTCTG
CAAGAACTTTTGTTCCAACGACGCGAGCGACCAGGTCGGTAATTTCTACG
TTTCGTGGCGACAACCTCGGTTGTTGCTTCTTATGTTCTTGTGCATCGAG
ACTAAGGGGGGGATTTACCCGAACTCATTGCTGTTCATAGTCTGTCGCGT
GTGTGTGTGCCTTCTTGTGTAATGTGTGTGCAAGCTTCTCTGGCCGTGTC
ACCATTGTATCCTAACGAACACATGGTGAAGCTCCGGAACGGTTCCGGCC
GTCCACGCCCGAAACAACACGATCCATACAACTAACATTGCCGTGCTTCT
CCTCCGCTGCAACGTGTCTGACCGCTCACAGCAAGTCGAAGGCGGCCGAG
TTCGACTCTGCATCGAGGGTTTCGGAGGCGGAGCAGAATTGTGCCCGTCT
CAGGATGCAGCTGCAAGCGCGCGAGCGACAGGTATGCACGCACCGCGGGT
TCCGTGTTAGGACTGTTGCGTGGCCAAGCGGCGGAAGGGTGGACGTTCTT
CCCACACCTGATTGCCCACCCGCACCTTTTTTTCGGATGCCTTGGTTGGG
TAAGTTCGCCTGTGACCACGGGAATCGACCGCGTCAAGTGTTTGAGTAGT
ACGGACGTAACGAGTCATTGAGTTGGGAGACCGGGGCGGTTATTAACGTG
AAGACAACAGCAACGACATTAGTCCAGGCGCAGAATCCGCCGAAACCGAA
CTCGAGACCGGGCGATCAGATCAAGCTCACACACGCAAGCGAGCCCCAAA
CGAAGATAGACGAGAAAATAATGGGTTACGAAATGCGAACACAGTGAACA
GGCCTCGCCTTGTCGACGTTTCCATCTGTCTCTGTCCCTGTGCCGCCCTC
TTCCTGGTAACCCCGTTCCTGCTTTGCCCCACATTTTGTGCTGAGACACT
CTTCACCTTCGTTTTTCCTCCCACCCCCACTGCTTACGCAATTATGGCCT
GAATGTCATTGTACATGTCAGCAAGCACCCGAAGCCAATCATTTTCCTCC
AACGACCTCGCGTGTTGCATGTGACGGTTGTTCGTCGGAACGGCCTGCTA
CCCACCTTCCTCCGCCGAAGATCGCCGAGCTTCGAGAAATATCTCAGGGG
AATCTCAACCGCGCCAAGCACCGCCGGAAGCAATGTGCCTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6064:2..2446+

>mRNA_Ecto-sp13_S_contig6064.16714.1 ID=mRNA_Ecto-sp13_S_contig6064.16714.1|Name=mRNA_Ecto-sp13_S_contig6064.16714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6064:2..2446+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATCACCAAAGACACAGGTTCTCCTGGCCATCGGGAAATCCCGGAAAA
GGGTGTTCTGAGCAGCCTGGGAACTGCTGACGGCCCGGCGAAGGAGGCGG
GTGCAGAAAATGAAAAGATGAGTGCATTGTCCAACGCTGAGCGAGAGCTC
GCCGTTGTAACGGAATCTGGAAACGCGCCTACGCGGGAGGAACGTCGAAG
TGGTGGCCGTGGTCGTGTTCGTGGTGCTGACGGTCCTGGTGGTGGCGCTG
GTCGTGGTGGTGGTAATGGCGGCGGTAACGACGAGGGCTTCGCAGTAGGG
GTGGTAGAGATGCTGAGGGAGAGAGCCGCGGCAGCGTCCCTGGCGGCCGA
GGTGGCCAGGAAGGACGGGGACCGGGCCAGGGTCGACCTCGAAGCCTTCA
AGGAGAGGGTGGCGTCGGTCGAGGAGCTATTGAGCAAGTCGAAGGCGGCC
GAGTTCGACTCTGCATCGAGGGTTTCGGAGGCGGAGCAGAATTGTGCCCG
TCTCAGGATGCAGCTGCAAGCGCGCGAGCGACAGATCGCCGAGCTTCGAG
AAATATCTCAGGGGAATCTCAACCGCGCCAAGCACCGCCGGAAGCAATGT
GCCTGGTGA
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