mRNA_Ecto-sp13_S_contig6063.16712.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: A0A6H5JG60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG60_9PHAE) HSP 1 Score: 276 bits (707), Expect = 3.380e-85 Identity = 139/171 (81.29%), Postives = 143/171 (83.63%), Query Frame = 1
Query: 1 GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKV----------------------APTHAVAGNNETTSEQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYCPGGNSEPVKVSVGYYSVGGSGPT 447
GYVCGSGATSPTE VCGG GDMFCPEGSSTASKV A T AVAGNNETT+EQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGAT+G+CSGFCEAGF+CRNGSVSPEENPCGDSSVYCP NSEPVKVSVGYYSVGGSGPT
Sbjct: 4 GYVCGSGATSPTEAVCGGDGDMFCPEGSSTASKVNEGHYTVGGDATLLMEAVITTTADTIAVAGNNETTAEQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATQGSCSGFCEAGFVCRNGSVSPEENPCGDSSVYCPWANSEPVKVSVGYYSVGGSGPT 174
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: D8LRD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD9_ECTSI) HSP 1 Score: 171 bits (433), Expect = 1.490e-46 Identity = 90/131 (68.70%), Postives = 97/131 (74.05%), Query Frame = 1
Query: 46 CG-GHGDMFCPEGSSTASKV----------------------APTHAVAGNNETTSEQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSS 369
CG GH +CPEGS + +V A T AVAGNN+TT+EQVEADPSLTSTRSAERLCEPGFWCEAGFRY CEAG YGSDFGATRGNCSGFCEAGF+CRNGSVSPEENPCG+ S
Sbjct: 254 CGPGH---YCPEGSHRSDQVNEGHYTVGGDATLLMEAVITTTAGTIAVAGNNQTTAEQVEADPSLTSTRSAERLCEPGFWCEAGFRYLCEAGAYGSDFGATRGNCSGFCEAGFVCRNGSVSPEENPCGELS 381
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: A0A7S3M821_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M821_9STRA) HSP 1 Score: 120 bits (300), Expect = 7.250e-29 Identity = 67/146 (45.89%), Postives = 83/146 (56.85%), Query Frame = 1
Query: 1 GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKVAPTHAVAGNNETTSEQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYCPGGNSEPVKVSVGYYSVGGS 438
GY C G+ S + CGG D FCP GS+ A V + T + V+ +P+L S AER CEPGF+C G + C GT+G +FG R NCSG C GS+SP E CGD+ YCPGGN +PV V GYYSVGG+
Sbjct: 152 GYYCEEGSESERQYPCGG-ADRFCPPGSTIAQNVHVGYY-------TVQLVDNNPALAS---AERRCEPGFYCSEGVKALCAPGTWGGEFGLHRANCSGVCXXXXXXPEGSISPIEKRCGDADKYCPGGNFQPVMVEEGYYSVGGN 286
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: T0QID9_SAPDV (Ephrin_rec_like domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QID9_SAPDV) HSP 1 Score: 94.0 bits (232), Expect = 1.740e-19 Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 1 GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKVAPTHAVAGNNETTSEQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYCPGGNSEPVKVSVGYYSVGGSGPT 447
G+ C G++ PT+V CG + + C GS++ VA + G+ + R + C G +C G + C GTYG TR CSG C G+ C GS++ + PCG+ SVYCP G+ +P+ VSVGYY+ GG+ T
Sbjct: 772 GFYCPPGSSLPTQVACG-NASVICRRGSASPEPVAVGYYSGGDT-------------SPMRWYQLPCPLGSYCVDGTSFLCPGGTYGGVPQLTRPTCSGLCAPGYYCPTGSIAAQAFPCGNVSVYCPPGSPQPLAVSVGYYTTGGTNST 906
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: A0A5D6XLS4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLS4_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 8.100e-19 Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 1 GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKVAPTHAVAGNNETTSEQVEADPSLT------------STRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYCPGGNSEPVKVSVGYYSVGGSGPT 447
GY C +T+ VCG + ++FCP GS+ + V P + ++ T S+Q+ + + R A+ CE G++C G ++ C G YG G T S FC+ G+ C GS+SP + CG S V C G+ PV V+ GYYSVGGS T
Sbjct: 529 GYYCPLASTNSAMRVCG-NANVFCPAGSAVPTPVLPGYYSTRSSLTGSQQLLSGAGVALRYAALHANVNEEVRDAQAQCEAGYFCVGGRKFICPGGRYGDRVGET----SPFCQRGYYCPPGSISPTQRECGGSDVICYTGSPLPVAVASGYYSVGGSNAT 684
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: K0SWJ8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SWJ8_THAOC) HSP 1 Score: 79.7 bits (195), Expect = 1.570e-14 Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 163 PSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYCPGGNSEPVKVSVGYY 423
PS T++ E CE G +C G +Y C G++G T CSG CE GF C GS +P + CG VYCP G+S P V GYY
Sbjct: 354 PSSQLTKTHEHPCELGHFCHLGVQYKCPRGSFGDRQKETYHQCSGLCEPGFFCEEGSPTPTQYACGGPDVYCPRGSSAPQYVREGYY 440
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: A0A835Z6D3_9STRA (TNFR-Cys domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D3_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 2.980e-10 Identity = 52/161 (32.30%), Postives = 73/161 (45.34%), Query Frame = 1
Query: 1 GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKVAPTHAVAGNNETTSEQ----VEADPSLTSTRSAERLCEPGFWCEAGF-----------------RYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENP----CGDSSVYCPGGNSEPVKV 408
GY C + + + T CGG ++C EGS+ PT A+ G ++ VEA L +TR+A+ LC PG++C G R C GTY +GA + C AG+ C + P +P CG VYCP G+SEP+ V
Sbjct: 268 GYTCAAASVNATARPCGGTA-VYCSEGSAV-----PTPALDGYYTISAGMQQALVEATDPLNTTRTAQILCGPGYYCTGGAKIAAARSAVDLMRAEPARIKCPPGTYQWRYGAHDVSDCAPCPAGYFCPSYPAPPTVDPAPFECGGPDVYCPEGSSEPLPV 422
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: A0A6A3UVA4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UVA4_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 5.630e-8 Identity = 39/128 (30.47%), Postives = 53/128 (41.41%), Query Frame = 1
Query: 1 GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKVAPTHAVAGNNETTSEQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYCPG 384
GY C GA T+ C FC +GSS + V + R+ E +C G +C G +Y C TYG+ G CSG C+ GF+C GS S ++PC + Y G
Sbjct: 361 GYYCPKGAADYTQYPCTSR-TSFCRQGSSVPNAVDTGYYTVATQ-------------AGLRTDEIVCPTGSYCIGGVQYLCPERTYGNTTGLASKACSGKCQNGFLCPQGSTSATQSPCPAGNYYIRG 474
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: A0A6A3P6N5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P6N5_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 6.980e-8 Identity = 43/126 (34.13%), Postives = 57/126 (45.24%), Query Frame = 1
Query: 1 GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKVAPTHAVAGNNETTSEQVEADPSLTSTRSAERLCEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYC 378
GY C GA T+ C FC +GSS +AV T + Q E R+ E +C G +C G +Y C TYG+ G CSG C+ GF+C GS S ++PC + YC
Sbjct: 197 GYYCPKGAADYTQYPCTSR-TSFCRQGSSVP------NAVDTGYYTVATQAEL-------RTDEIVCPTGSYCIGGVQYFCPERTYGNTTGLASKACSGKCQNGFLCPQGSTSATQSPC-PAGNYC 307
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Match: G5AFJ8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AFJ8_PHYSP) HSP 1 Score: 59.7 bits (143), Expect = 1.420e-7 Identity = 35/92 (38.04%), Postives = 45/92 (48.91%), Query Frame = 1
Query: 157 ADPSLTSTRSAERL-CEPGFWCEAGFRYPCEAGTYGSDFGATRGNCSGFCEAGFICRNGSVSPEENPCGDSSVYCPGGNSEPVKVSVGYYSV 429
A S+ +AE L C G + + C G +G+ G T CSG C AGF C GS SP+E PCG S +E KV GYY++
Sbjct: 15 AAASVMLLHTAEALACNAGSYFDGVKCSRCPGGRFGAAPGLTSSACSGLCNAGFFCPEGSTSPQEKPCGTSVXXXXXXXAERRKVDEGYYTI 106 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6063.16712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6063.16712.1 >prot_Ecto-sp13_S_contig6063.16712.1 ID=prot_Ecto-sp13_S_contig6063.16712.1|Name=mRNA_Ecto-sp13_S_contig6063.16712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp GYVCGSGATSPTEVVCGGHGDMFCPEGSSTASKVAPTHAVAGNNETTSEQback to top mRNA from alignment at Ecto-sp13_S_contig6063:269..1486- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6063.16712.1 ID=mRNA_Ecto-sp13_S_contig6063.16712.1|Name=mRNA_Ecto-sp13_S_contig6063.16712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6063:269..1486- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6063:269..1486- >mRNA_Ecto-sp13_S_contig6063.16712.1 ID=mRNA_Ecto-sp13_S_contig6063.16712.1|Name=mRNA_Ecto-sp13_S_contig6063.16712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6063:269..1486- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |