mRNA_Ecto-sp13_S_contig60611.16711.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig60611.16711.1
Unique Name	mRNA_Ecto-sp13_S_contig60611.16711.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: A0A6H5KDG3_9PHAE (CTLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG3_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.730e-42
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL
Sbjct:  153 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 224

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: D7G553_ECTSI (WD40 repeat-containing protein SMU1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G553_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.090e-40
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELIERQEYQRAF FLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL
Sbjct:  152 QEYLELIERQEYQRAFVFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 223

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: A0A835YTG5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.740e-29
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEY+ELIE+QEYQ+AFA+LNRRLKPMEATAAS P EF NLCYLLTCKSV+D+ HF  W GV+ GREKL++EL
Sbjct:  110 QEYMELIEKQEYQKAFAYLNRRLKPMEATAASNPTEFQNLCYLLTCKSVADSPHFMGWEGVMAGREKLSDEL 181

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: A0A2P4Y659_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y659_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.190e-20
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPN---EFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELI+RQEYQ+AF FL   LKP+E  AA+T +   EF  LCYLLTCK+V ++  FR W GV+  REKL E+L
Sbjct:   33 QEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 107

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: M4BFV4_HYAAE (WD40 repeat-containing protein SMU1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFV4_HYAAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.100e-19
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPN---EFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELI+RQEYQ+AF FL   LKP+E  A +T +   EF  LCYLLTCK+V ++  FR W GV+G REKL E+L
Sbjct:  127 QEYLELIDRQEYQKAFTFLTTHLKPLEKVAVATSSSRHEFKELCYLLTCKAVGESNAFRDWEGVVGSREKLVEQL 201

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: A0A2P4X6J9_9STRA (CTLH domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6J9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.870e-19
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPN---EFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELI+RQEYQ+AF FL   LKP+E  AA+T +   EF  LCYLLTCK+V ++  FR W GV+  REKL E+L
Sbjct:  130 QEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 204

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: H3GZS2_PHYRM (WD40 repeat-containing protein SMU1 n=19 Tax=Phytophthora TaxID=4783 RepID=H3GZS2_PHYRM)

HSP 1 Score: 89.4 bits (220), Expect = 3.830e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPN---EFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELI+RQEYQ+AF FL   LKP+E  AA+T +   EF  LCYLLTCK+V ++  FR+W GV+  REKL E+L
Sbjct:  132 QEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRNWEGVVRSREKLVEQL 206

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: A0A3F2RT78_9STRA (WD40 repeat-containing protein SMU1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RT78_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.860e-19
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPN---EFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELI+RQEYQ+AF FL   LKP+E  AA+T +   EF +LCYLLTCK+V ++  FR W GV+  REKL E+L
Sbjct:  472 QEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKDLCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 546

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: D0NHZ8_PHYIT (WD40 repeat-containing protein SMU1 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NHZ8_PHYIT)

HSP 1 Score: 89.0 bits (219), Expect = 5.270e-19
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPN---EFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELI+RQEYQ+AF FL   LKP+E  AA+T +   EF  LCYLLTCK+V ++  FR W GV+  REKL E+L
Sbjct:  552 QEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 626

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BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Match: A0A0W8C1L0_PHYNI (WD40 repeat-containing protein SMU1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C1L0_PHYNI)

HSP 1 Score: 89.0 bits (219), Expect = 5.300e-19
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1

Query:    1 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPN---EFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEEL 216
            QEYLELI+RQEYQ+AF FL   LKP+E  AA+T +   EF  LCYLLTCK+V ++  FR W GV+  REKL E+L
Sbjct:  957 QEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 1031

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig60611.16711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KDG3_9PHAE	4.730e-42	100.00	CTLH domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7G553_ECTSI	3.090e-40	98.61	WD40 repeat-containing protein SMU1 n=1 Tax=Ectoca...	[more]
A0A835YTG5_9STRA	2.740e-29	76.39	WD40 repeat-containing protein SMU1 n=1 Tax=Tribon...	[more]
A0A2P4Y659_9STRA	7.190e-20	60.00	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
M4BFV4_HYAAE	1.100e-19	60.00	WD40 repeat-containing protein SMU1 n=1 Tax=Hyalop...	[more]
A0A2P4X6J9_9STRA	1.870e-19	60.00	CTLH domain-containing protein (Fragment) n=1 Tax=...	[more]
H3GZS2_PHYRM	3.830e-19	60.00	WD40 repeat-containing protein SMU1 n=19 Tax=Phyto...	[more]
A0A3F2RT78_9STRA	3.860e-19	60.00	WD40 repeat-containing protein SMU1 n=3 Tax=Phytop...	[more]
D0NHZ8_PHYIT	5.270e-19	60.00	WD40 repeat-containing protein SMU1 n=1 Tax=Phytop...	[more]
A0A0W8C1L0_PHYNI	5.300e-19	60.00	WD40 repeat-containing protein SMU1 n=1 Tax=Phytop...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig60611	contig	Ecto-sp13_S_contig60611:228..443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	145.2
Seed ortholog evalue	1.2e-32
Seed eggNOG ortholog	2880.D7G553
Model size	216
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	WD repeat-containing protein
EggNOG OGs	KOG0266@1,KOG0266@2759
Cds size	216
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463844.818233-CDS-Ecto-sp13_S_contig60611:227..443	1681463844.818233-CDS-Ecto-sp13_S_contig60611:227..443	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig60611 228..443 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig60611.16711.1	prot_Ecto-sp13_S_contig60611.16711.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig60611 228..443 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig60611:228..443+
coding sequence from alignment at Ecto-sp13_S_contig60611:228..443+

protein sequence of mRNA_Ecto-sp13_S_contig60611.16711.1

>prot_Ecto-sp13_S_contig60611.16711.1 ID=prot_Ecto-sp13_S_contig60611.16711.1|Name=mRNA_Ecto-sp13_S_contig60611.16711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVS
DAGHFRSWGGVLGGREKLAEEL

mRNA from alignment at Ecto-sp13_S_contig60611:228..443+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig60611.16711.1 ID=mRNA_Ecto-sp13_S_contig60611.16711.1|Name=mRNA_Ecto-sp13_S_contig60611.16711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60611:228..443+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGTACTTGGAGCTGATCGAGCGGCAGGAGTACCAGAGAGCGTTCGC
TTTCCTAAACCGTCGGCTTAAGCCGATGGAGGCCACGGCCGCATCAACGC
CGAACGAGTTCCTCAACCTCTGCTACCTCCTGACGTGCAAGTCGGTGTCG
GACGCCGGGCACTTTAGGTCCTGGGGGGGTGTCTTGGGCGGGAGGGAGAA
GCTGGCGGAGGAGCTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60611:228..443+

>mRNA_Ecto-sp13_S_contig60611.16711.1 ID=mRNA_Ecto-sp13_S_contig60611.16711.1|Name=mRNA_Ecto-sp13_S_contig60611.16711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60611:228..443+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGTACTTGGAGCTGATCGAGCGGCAGGAGTACCAGAGAGCGTTCGC
TTTCCTAAACCGTCGGCTTAAGCCGATGGAGGCCACGGCCGCATCAACGC
CGAACGAGTTCCTCAACCTCTGCTACCTCCTGACGTGCAAGTCGGTGTCG
GACGCCGGGCACTTTAGGTCCTGGGGGGGTGTCTTGGGCGGGAGGGAGAA
GCTGGCGGAGGAGCTC