mRNA_Ecto-sp13_S_contig11959.1671.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11959.1671.1
Unique NamemRNA_Ecto-sp13_S_contig11959.1671.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A6H5JZ76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ76_9PHAE)

HSP 1 Score: 518 bits (1334), Expect = 2.890e-180
Identity = 252/255 (98.82%), Postives = 255/255 (100.00%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKKASL 765
            KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQ+EAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKKA++
Sbjct:   85 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQAEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKKATI 339
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A7S2V118_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V118_9STRA)

HSP 1 Score: 348 bits (893), Expect = 9.360e-118
Identity = 166/226 (73.45%), Postives = 195/226 (86.28%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGG 678
            KCPYLDTINRN LDFDFEK+CS+SL+N NVYACLVCGK+FQGRGRNTHAYTHSVQ  HHV+I+L T ++YCLPD+YEVV++SL DIKRAL P ++ + +  LD+NTTL+RD YGV+YLPGFVGLNNLK TDFVNVVL ALAHV PLR+FF++P NY  S+S LVH FGEV+R++WS  NFKS VSPHEF+Q V+ ASKKRFR G Q+E IDFLAWLL+SLH GLGG
Sbjct:    6 KCPYLDTINRNFLDFDFEKVCSVSLTNLNVYACLVCGKFFQGRGRNTHAYTHSVQAFHHVWIHLGTNKIYCLPDNYEVVNTSLNDIKRALKPEFTRQQLGLLDQNTTLARDVYGVSYLPGFVGLNNLKSTDFVNVVLQALAHVTPLRDFFLQPQNYHLSRSQLVHRFGEVMRKMWSKDNFKSCVSPHEFVQEVTVASKKRFRIGQQAECIDFLAWLLHSLHVGLGG 231
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A835Z9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q1_9STRA)

HSP 1 Score: 350 bits (899), Expect = 2.760e-116
Identity = 168/235 (71.49%), Postives = 202/235 (85.96%), Query Frame = 1 
Query:   64 SISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRK--AGSSVVFQTFQGLVEVETLTKKKAS 762
            S++LSN NVYACLVCGKYFQGRGR+THAYTHSVQ+ HHVFI+L T ++YCLPD+YEVVDSSL+DIKRAL P Y+P  +AALD+NTTL+RDQYGVAYLPGFVGLNNL  TD++NV LHALAHV PLR+FF++P NY   KS LV AFGEV+RR+WS  NFKSAVSPHEF+QAVS AS KRF  G Q+E IDF++WLLNSLH GLGG++K  AG+S++ +TFQGLV V T+T++ A+
Sbjct:    9 SVTLSNQNVYACLVCGKYFQGRGRSTHAYTHSVQHSHHVFIHLETSKIYCLPDNYEVVDSSLDDIKRALFPSYAPRDMAALDRNTTLARDQYGVAYLPGFVGLNNLTSTDYLNVTLHALAHVAPLRDFFLDPTNYAGCKSPLVLAFGEVIRRLWSHDNFKSAVSPHEFLQAVSIASNKRFHVGQQAECIDFMSWLLNSLHVGLGGSKKKKAGTSIIHKTFQGLVHVHTMTREAAA 243
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A5D6Y3K6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3K6_9STRA)

HSP 1 Score: 350 bits (899), Expect = 9.910e-116
Identity = 163/256 (63.67%), Postives = 209/256 (81.64%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEP-DNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKKASL 765
            KCPYLDTIN  +LDFDFEK+CS+SLS+ NVYACLVCG+YFQGRGR THA+TH+VQ+ HHVFINLRT R+YCLPD+YEVVD SL  +K AL P +    +A LD+N  L++D +GV+YLPGF+GLNNLK TD+VNVV+ ALAH+PPLR+FF++  D    S+S LVH FGE++R++WSP NFK+ +SPHEF+Q VS +SKKRF  G Q+E+++FL+WLLN LH+GLGG+ K GSS+V   FQG VEV T+ + KA++
Sbjct:   23 KCPYLDTINPQMLDFDFEKVCSVSLSDQNVYACLVCGRYFQGRGRATHAFTHAVQSAHHVFINLRTDRIYCLPDNYEVVDHSLRAVKDALRPSFDAALVARLDQNRILAQDAFGVSYLPGFIGLNNLKNTDYVNVVVQALAHIPPLRDFFLQATDVVASSRSQLVHRFGELLRKMWSPHNFKNTISPHEFVQEVSVSSKKRFHVGTQNESVEFLSWLLNELHRGLGGSSKPGSSIVHTCFQGFVEVTTIDEAKAAV 278
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: X5IAE6_9STRA (Ubiquitin specific peptidase 39 n=1 Tax=Ciliophrys infusionum TaxID=38824 RepID=X5IAE6_9STRA)

HSP 1 Score: 354 bits (908), Expect = 1.100e-115
Identity = 169/255 (66.27%), Postives = 209/255 (81.96%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKKASL 765
            KCPYLDTINR+VLDFDFEK+CS+SLSN NVY CLVCGK+FQGRG+NTHAYTHSV   HHVFINL T +++CLPD+YEVVD SL+DI RAL+P ++P+    L+ NTTL+RD +GV YLPGF+GLNNLK TD+VNVV+HALAHV PLR+FF+   NY++SKS LVH FGE++R+IWS  N+KS VSPHE +Q V+ ASK+RF  G QSE ++FL+WLLNSLH GLGGTRK   S++ + FQG V V T  +K A++
Sbjct:   90 KCPYLDTINRHVLDFDFEKVCSVSLSNLNVYCCLVCGKFFQGRGKNTHAYTHSVHVSHHVFINLHTRKIFCLPDNYEVVDFSLDDIVRALNPTFTPQETRLLNYNTTLARDIFGVTYLPGFIGLNNLKKTDYVNVVVHALAHVTPLRDFFLRSQNYENSKSQLVHRFGELMRKIWSKHNYKSCVSPHELVQEVTVASKRRFVIGKQSECVEFLSWLLNSLHFGLGGTRK-DKSIIHEVFQGKVRVTTRQRKTAAV 343
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A833TV06_PHYIN (Ubiquitin carboxyl-terminal hydrolase domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A833TV06_PHYIN)

HSP 1 Score: 344 bits (882), Expect = 3.860e-113
Identity = 162/254 (63.78%), Postives = 206/254 (81.10%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKKAS 762
            KCPYLDT+N  +LDFDFEK+CSISLS+ NVYACLVCGKYFQGRGRNTHA+THSVQ+ HHVFINL+T R+YCLPD+YEVVD++L+ ++ AL PR+    IA LD+N  L++D +GV+YLPGF+GLNNLK TD++NVV+ ALAHVPPLR+FF+     K  KS LV  FGE++R++WSP NFK+ +SPHE +Q +S +SKKRF  G Q+E++D LAWLLN LH+GLGGT K GSS++ + FQG VEV T  + K +
Sbjct:   29 KCPYLDTVNHQLLDFDFEKVCSISLSDQNVYACLVCGKYFQGRGRNTHAFTHSVQSSHHVFINLQTDRIYCLPDNYEVVDNTLKPVQDALRPRFEETQIAQLDQNRILAQDAFGVSYLPGFIGLNNLKHTDYINVVVQALAHVPPLRDFFLANKMGK-VKSKLVLRFGELLRKMWSPHNFKNTISPHELVQEISVSSKKRFHVGTQNESVDLLAWLLNELHRGLGGTHKPGSSIIHKCFQGFVEVTTDDETKVA 281
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A2D4BEV5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEV5_PYTIN)

HSP 1 Score: 343 bits (881), Expect = 5.000e-113
Identity = 164/253 (64.82%), Postives = 203/253 (80.24%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDS-KSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKK 756
            KCPYLDTI+  +LDFDFEK+CSISLS+ NVYACLVCGKYFQGRGRNTHA+THSVQ GHHVFINL+  R+YCLPD+YEV+D++L+ IK AL P +S + IA LD N  L++D +GV+YLPGFVGLNNLK TDF+NVV+ ALAHVP  R+FF++  N     KS LV  FGE++R++WSP NFK+ +SPHEF+Q VS +SKKRF  G Q E+ +FL+WLLN LH+GLGG+ K GSSVV + FQG+V V T  + K
Sbjct:   20 KCPYLDTIHHQLLDFDFEKVCSISLSDQNVYACLVCGKYFQGRGRNTHAFTHSVQAGHHVFINLQNDRIYCLPDNYEVIDTALQPIKNALRPTFSADAIARLDSNRLLAQDAFGVSYLPGFVGLNNLKSTDFINVVVQALAHVPMXRDFFLDASNTVGKCKSPLVLRFGELLRKMWSPHNFKNTISPHEFVQEVSVSSKKRFHIGQQEESFEFLSWLLNELHRGLGGSHKPGSSVVHKCFQGVVNVTTTDETK 272
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A7S3ZYB1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYB1_9STRA)

HSP 1 Score: 344 bits (882), Expect = 8.550e-113
Identity = 160/251 (63.75%), Postives = 200/251 (79.68%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKK 753
            +CPYLDTINR++LDFDFEK+CS SLS  NVY+CLVCGK+FQGRG  THAYTH+   GHH+F +L TC++YCLPD+YEVVDSSL+D+ R L P ++PE I  LDK  TL+RD +GVAYLPGF GLNNLK TD++NVV+H LAHV PLR+FF++P NYKD  S LV  FG ++R+IWS  NFKS VSPHE +Q V+ ASK RF+ G  ++A DFL WLLN LH+ LGGT++ GSS++   FQG + VETL++K
Sbjct:   86 QCPYLDTINRHLLDFDFEKVCSQSLSTQNVYSCLVCGKFFQGRGPKTHAYTHATLCGHHMFAHLDTCKIYCLPDNYEVVDSSLDDVIRCLRPSFTPERIEQLDKVATLARDVHGVAYLPGFCGLNNLKKTDYINVVVHQLAHVRPLRDFFLDPRNYKDRPSPLVREFGALLRKIWSRDNFKSVVSPHELVQEVTRASKLRFKIGTSADAADFLGWLLNQLHRDLGGTKRPGSSIIHDVFQGSIRVETLSRK 336
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BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A485KGR7_9STRA (Aste57867_4627 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGR7_9STRA)

HSP 1 Score: 342 bits (878), Expect = 1.120e-112
Identity = 161/253 (63.64%), Postives = 201/253 (79.45%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDNYKD----SKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLT 747
            KCPYLDTI   +LDFDFEK+CS+SLS+ N YACLVCGKYFQGRG NTHAYTHSVQ+ HHVFINL+T ++YCLPD+YEV D SL  IK AL P +S E I  LD N TL++D +GV+YLPGF+GLNNLK TD++ VVLHALAHV PLR++F+  DNY      ++S LV  FGE++R++WSP N K+ +SPHE +QA+S ASKKRF  G Q +A++FL+W LN LH+GLGGT+  GSS+V + FQGLV V+TL+
Sbjct:   23 KCPYLDTIKPQLLDFDFEKVCSVSLSDQNAYACLVCGKYFQGRGPNTHAYTHSVQSFHHVFINLQTDKIYCLPDNYEVTDLSLAPIKNALRPTFSNEAITTLDTNRTLAQDSFGVSYLPGFIGLNNLKKTDYITVVLHALAHVSPLRDYFLNADNYATQVAKTRSPLVLRFGEIMRKLWSPHNIKNTISPHEIVQAISVASKKRFHIGKQCDALEFLSWFLNELHRGLGGTKTPGSSIVHKVFQGLVNVKTLS 275
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Match: A0A8K1FFF5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFF5_PYTOL)

HSP 1 Score: 343 bits (879), Expect = 1.130e-112
Identity = 157/253 (62.06%), Postives = 208/253 (82.21%), Query Frame = 1 
Query:    1 KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFFVEPDN-YKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKRFRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTKKK 756
            KCPYLDTIN  +LDFDFEK+CS++LS+ NVYACLVCGKYFQGRG++THA+THSVQN HHVFINL+  ++YCLPD+YEV+D++L+ IK AL P +  + I  LD+N  L++D +GV+YLPGF+GLNNLK TD++NVV+ ALAHVPPLR+FF+   N    SKS+LV  FGE++R++WSP NFK+ +SPHEF+Q VS +S KRF  G Q+E+++FL+WLLN LH+GLGG+ K GSS++ + FQGL+EV+T  + K
Sbjct:   24 KCPYLDTINHQLLDFDFEKVCSVTLSDQNVYACLVCGKYFQGRGKSTHAFTHSVQNSHHVFINLQNDKIYCLPDNYEVIDTALQPIKNALRPAFQLKTIGKLDENRLLAQDAFGVSYLPGFIGLNNLKHTDYINVVVQALAHVPPLRDFFLLSSNTVGKSKSSLVLRFGELLRKMWSPHNFKNTISPHEFVQEVSVSSNKRFHVGQQNESVEFLSWLLNELHRGLGGSHKRGSSIIHKCFQGLIEVKTTDETK 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11959.1671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ76_9PHAE2.890e-18098.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V118_9STRA9.360e-11873.45Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835Z9Q1_9STRA2.760e-11671.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6Y3K6_9STRA9.910e-11663.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
X5IAE6_9STRA1.100e-11566.27Ubiquitin specific peptidase 39 n=1 Tax=Ciliophrys... [more]
A0A833TV06_PHYIN3.860e-11363.78Ubiquitin carboxyl-terminal hydrolase domain-conta... [more]
A0A2D4BEV5_PYTIN5.000e-11364.82Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S3ZYB1_9STRA8.550e-11363.75Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A485KGR7_9STRA1.120e-11263.64Aste57867_4627 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8K1FFF5_PYTOL1.130e-11262.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11959contigEcto-sp13_S_contig11959:2185..5222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score471.1
Seed ortholog evalue3.4e-130
Seed eggNOG ortholog2880.D8LCL6
Preferred nameUSP39
Model size795
KEGG koko:K12847
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008380,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0010498,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019538,GO:0019783,GO:0019787,GO:0019941,GO:0022607,GO:0022613,GO:0022618,GO:0030163,GO:0031146,GO:0031974,GO:0031981,GO:0032446,GO:0034622,GO:0034641,GO:0036211,GO:0036459,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0051603,GO:0065003,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575
Exons6
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG2026@1,KOG2026@2759
Cds size795
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11959.1671.1prot_Ecto-sp13_S_contig11959.1671.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11959 2185..5222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.6476014-CDS-Ecto-sp13_S_contig11959:2184..22411681462633.6476014-CDS-Ecto-sp13_S_contig11959:2184..2241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11959 2185..2241 +
1681462633.6589253-CDS-Ecto-sp13_S_contig11959:3137..33921681462633.6589253-CDS-Ecto-sp13_S_contig11959:3137..3392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11959 3138..3392 +
1681462633.6800222-CDS-Ecto-sp13_S_contig11959:3798..38881681462633.6800222-CDS-Ecto-sp13_S_contig11959:3798..3888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11959 3799..3888 +
1681462633.69242-CDS-Ecto-sp13_S_contig11959:4090..41771681462633.69242-CDS-Ecto-sp13_S_contig11959:4090..4177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11959 4091..4177 +
1681462633.7027545-CDS-Ecto-sp13_S_contig11959:4587..47641681462633.7027545-CDS-Ecto-sp13_S_contig11959:4587..4764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11959 4588..4764 +
1681462633.7142684-CDS-Ecto-sp13_S_contig11959:5093..52221681462633.7142684-CDS-Ecto-sp13_S_contig11959:5093..5222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11959 5094..5222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11959.1671.1

>prot_Ecto-sp13_S_contig11959.1671.1 ID=prot_Ecto-sp13_S_contig11959.1671.1|Name=mRNA_Ecto-sp13_S_contig11959.1671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp
KCPYLDTINRNVLDFDFEKLCSISLSNNNVYACLVCGKYFQGRGRNTHAY
THSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIA
ALDKNTTLSRDQYGVAYLPGFVGLNNLKCTDFVNVVLHALAHVPPLRNFF
VEPDNYKDSKSTLVHAFGEVVRRIWSPSNFKSAVSPHEFIQAVSYASKKR
FRPGVQSEAIDFLAWLLNSLHQGLGGTRKAGSSVVFQTFQGLVEVETLTK
KKASLLWRASRAIG*
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mRNA from alignment at Ecto-sp13_S_contig11959:2185..5222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11959.1671.1 ID=mRNA_Ecto-sp13_S_contig11959.1671.1|Name=mRNA_Ecto-sp13_S_contig11959.1671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11959:2185..5222+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTGCCCCTACCTCGACACGATCAATCGTAACGTGCTTGACTTCGATTT
CGAGAAGGTGTGAAACAACGCTGCAGTATTGCTAATGCTATTGCTGTCCG
GAAGGAGCAATTGCACTCTCTCCCCCGCGACGGAAGATACTGGAGAGCCA
GCACGGTTGGCGATCTGATGCTGCACTACTACTGCTGTAGGATATGACGC
TTTTCGGCGGGGTGAAATCGCACTGTGATAATAATTGGAAAACCCATTGG
GGACAGGCTCTGACAACGCTGGCCTTGTTTCTTGTGCAATAGTACAGAAT
GCGGTGACCGTCTACGGTAGCTGTAAGTCTGCTTGCCACTGCGCTGTTGT
CCTCAGGTCTCGTTCTCTATACGACCACTGCTGCCATGTGACTACAGTAG
TACAGTCGCAGCGGCACGCAAATTTTGATGTTCGCGTGAGTTGGGGACAG
CGGTGTGTGCTCGTAAGTCGCAATCGTTTTCGGTGTGGCGATCAGCACTG
CCGACTGAATAGGTCATCTTTTTGATAGGACCAAGTCGAACAACCACCCC
ACNNNNNNNNNNTCGTTAATTCCAATTTTTTTTTTGGTGGGGAAACACAC
CCCCCCCCAAAAAAGGTCTTTTTTTTTTTGAACCCACCCCCCCCCCCCCC
CCCCCCCCCACTCCTCTCACTCTCTCTCCCTCTCTGCCTGTCTGCCTGTT
TCTCTGTGTCTCTCTGTGTCTCCGTCTCTCTCTCTCTCTCTCTCCCTCTC
TCTTAATTCCCACGTCCGACGCCTGATGTAATCACTGCTAATGTTCCGCC
GAGAATCCCCGCGCCCTCTGCCAAGACCATCCATGGATCTACCCCTTCCA
GCAACACGTCGCAACGCTCCGCTGCCACCCCGTCTCCCTGCCTAACTCAA
CTGTTGCCAAATCCTCGTGTCTCCTCCTCTTCCCCTCGCTCTCTCCCGAG
CAGCTGTGCAGCATCTCCCTGTCAAACAACAACGTGTACGCGTGCCTGGT
ATGCGGGAAGTACTTCCAGGGCAGGGGCCGTAACACTCACGCCTACACCC
ACAGCGTGCAGAACGGGCACCACGTCTTTATCAACCTGCGGACGTGCCGG
GTGTACTGCCTCCCGGACTCGTACGAGGTGGTGGACTCGTCCCTGGAGGA
CATCAAGAGGGCACTCGACCCGAGATATTCTCCGGAGTGCATCGCCGCCC
TCGACAAGGTAATCGCGACCCGTCCACCGGAAAAGCGGGAGCGCCGCATG
ATGGCAATACTTCTTGCTTTTTAGACCGTTGTTTGATTTTGTAGTCGTGG
GTGCCAGGTGGTTCGTGTCCTACTGCTGTAGGCCGCGGGTTTGCAGGTCT
TGTCCACACCGGTCAGTGGCGGGTATTTCGTGTTCTTGGTCAAGGGTCTG
CAGGTCTTGTCCACGCCGGTCAGTGGCGGGTAATCCATGTTTCATGTATT
CCGGTAGCGTGAGCTAGGGTGTGAGAGGGGATGACCCGTTCAGCTTCGTC
CGTGTTCGTCGTTACTCTTCCTGACCTCCGCTCCCCTTACCCTACCCTGC
CCCCCTTGCGTGCCACGTTTGCTACCGCTGCTCCTCTTGGACGTTGTCCC
TGGGGGCGCCGCAGAATACAACGTTGTCGAGGGACCAGTACGGGGTGGCG
TACCTGCCGGGATTCGTGGGGCTCAACAACCTCAAGTGCACGGACTTTGT
GAACGTGAGGAGGTGTAGCGTCAGGCTTAGACTTTTCCGCTTCGCCGAGG
AGCTGCCGCATGACTGTTGTTACTGCTGCTGCTGCTTCTCCTGCTGTGGC
GAGGCTCATGCCATCCCCTCCGTGTACACCGCGCGATATCGACACCGATG
TATGTAACTGTTGTTGGTGCTGCTGCTGTCGCCCGCTCCTGACCACGACT
CCAAAGGTGGTCCTGCACGCGCTAGCACACGTGCCGCCGTTGCGCAACTT
CTTCGTGGAGCCGGACAACTACAAGGACAGCAAGTCGACGTTGGTGAGAA
ACGGGGCTCCTTCGCGAGAAACGTACGCGAGGGGGGGGGGGGGCGCTGTT
GACAATGTACTCAGCATCCACGGACCCAAAACGGAAGGGAATCAACACGC
AGGATCATGTTTTTCACTTTCGCGGTGGATGCTAGTCATAGACTTGACCG
CCGCGGGAGTCTTACGGCAGGAGCCGCAAGGATAAATTCGTCAACATCGC
GGACGCATGCCGATGAACGCGGTGTTGTTTTTCGGTACGGTTTTCGACCC
CGCCTGCCTTCTCCCCCCCCTCCCCCTTGCGGACGTTCCCGTACGAGTGG
GTTGCCGCCATGCTGACTCCATCTTTATCTTGTAGGGCGTGTCATGATTA
CCCCCCTCCCCCCCTCTCGGCTGAACGCGACCCCCATTCCCGCTACTCCC
AAGGTGCATGCCTTCGGAGAGGTGGTGAGGCGCATTTGGTCCCCGAGCAA
CTTCAAGAGCGCCGTGTCCCCCCACGAGTTCATCCAGGCGGTTTCCTACG
CGTCCAAGAAACGGTTCCGGCCTGGGGTGCAGTCGGAGGCGATCGACTTC
CTGGCTTGGTTGCTCAACTCCCTCCACCAGGTAGGTGGAATCGTAGGCAT
CTCATGTTTTCTGTTCGGAATAATCTGCTTCTGTTGGCTGCGACTACTTT
TGCTGGACACCGTCCGTCCGATACATTTCCCGCGACCCCTTTCTGGTTGT
TTGTTTTTGCTTTTGGAACCGTGGTGGCCGGTCATGGACGGGTGTCGGTC
AAAGCTCTACTTAGCAACTAAGGCAGCAAAGACATGACCACGCCTCACCC
CTTTGACTTCAGTTTTCTTCCCCTCCCCGCGCATTATCGTGTGTCGTGGG
TGACTGCTACTGGTCCTGCTTGCTGTTGCTTGCTGCTGCTGCTGCTGCTG
CTACCGCAGGGATTAGGCGGCACGAGGAAGGCCGGGAGCAGCGTGGTCTT
CCAGACGTTTCAGGGGCTGGTGGAGGTTGAAACCCTCACCAAGAAAAAGG
CAAGTCTGCTATGGCGCGCGTCCCGCGCGATTGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11959:2185..5222+

>mRNA_Ecto-sp13_S_contig11959.1671.1 ID=mRNA_Ecto-sp13_S_contig11959.1671.1|Name=mRNA_Ecto-sp13_S_contig11959.1671.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11959:2185..5222+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGTGCCCCTACCTCGACACGATCAATCGTAACGTGCTTGACTTCGATTT
CGAGAAGCTGTGCAGCATCTCCCTGTCAAACAACAACGTGTACGCGTGCC
TGGTATGCGGGAAGTACTTCCAGGGCAGGGGCCGTAACACTCACGCCTAC
ACCCACAGCGTGCAGAACGGGCACCACGTCTTTATCAACCTGCGGACGTG
CCGGGTGTACTGCCTCCCGGACTCGTACGAGGTGGTGGACTCGTCCCTGG
AGGACATCAAGAGGGCACTCGACCCGAGATATTCTCCGGAGTGCATCGCC
GCCCTCGACAAGAATACAACGTTGTCGAGGGACCAGTACGGGGTGGCGTA
CCTGCCGGGATTCGTGGGGCTCAACAACCTCAAGTGCACGGACTTTGTGA
ACGTGGTCCTGCACGCGCTAGCACACGTGCCGCCGTTGCGCAACTTCTTC
GTGGAGCCGGACAACTACAAGGACAGCAAGTCGACGTTGGTGCATGCCTT
CGGAGAGGTGGTGAGGCGCATTTGGTCCCCGAGCAACTTCAAGAGCGCCG
TGTCCCCCCACGAGTTCATCCAGGCGGTTTCCTACGCGTCCAAGAAACGG
TTCCGGCCTGGGGTGCAGTCGGAGGCGATCGACTTCCTGGCTTGGTTGCT
CAACTCCCTCCACCAGGGATTAGGCGGCACGAGGAAGGCCGGGAGCAGCG
TGGTCTTCCAGACGTTTCAGGGGCTGGTGGAGGTTGAAACCCTCACCAAG
AAAAAGGCAAGTCTGCTATGGCGCGCGTCCCGCGCGATTGGTTGA
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