mRNA_Ecto-sp13_S_contig60600.16709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60600.16709.1
Unique NamemRNA_Ecto-sp13_S_contig60600.16709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.330e-50
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1
Query:    7 AQQVAPVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGALLPAATEA 285
            A  VAPVVVGKPNPLLIRQLM+QNGLAAS+TLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGALLPAATEA
Sbjct:  219 ASGVAPVVVGKPNPLLIRQLMDQNGLAASKTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGALLPAATEA 311          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: A0A836CPG6_9STRA (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.080e-18
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    7 AQQVAPVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAG-GDKTPTYLLERLGALLPAAT 279
            A    PV++GKPNP+LI+ ++ Q G+  ++T MVGDRLDTD+ F NAGG+SS LV+TGVS  +D+  L A      P +++  L +L PA T
Sbjct:  225 ASGAVPVIIGKPNPILIKGILAQFGMDQARTAMVGDRLDTDMAFANAGGISSVLVMTGVSTDADLAALSAERAHMAPAFVMAALASLRPALT 316          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: A0A7S4UNH5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UNH5_GUITH)

HSP 1 Score: 79.0 bits (193), Expect = 6.490e-16
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   22 PVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQ--AGGDKTPTYLLERLGALL 267
            P VVGKP+P+LI+ LM++  L+  +TLMVGDRLDTDI FG  GG+ +ALVLTGVS   D+  +Q      + P ++LE L  L+
Sbjct:  139 PQVVGKPSPVLIQTLMDKFSLSKERTLMVGDRLDTDIEFGRRGGLGTALVLTGVSSRQDLQDVQHLRSMQRYPDFVLETLNDLV 222          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: M5E7Z7_MALS4 (Uncharacterized protein n=2 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=M5E7Z7_MALS4)

HSP 1 Score: 77.4 bits (189), Expect = 1.480e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   22 PVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGAL 264
            P+VVGKPN  +I  +   +    S+T+MVGDRL+TDI+FG  GG+ + LVLTGVS++ DV    A     PTY+L  LG+L
Sbjct:  499 PIVVGKPNQPMIDTIFASSDFEKSRTIMVGDRLNTDILFGQRGGIDTMLVLTGVSQLEDVAAPDAPA--VPTYVLAGLGSL 577          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: A0A067M178_9AGAM (4-nitrophenylphosphatase n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067M178_9AGAM)

HSP 1 Score: 74.3 bits (181), Expect = 9.160e-14
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    4 HAQQVAPVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGALLPAATEA 285
            +A +  PV +GKPN  ++  +  ++    ++T+M+GDRLDTDI+FG +GGVS+ LV+TGV++ SD+ G  A     P Y+++ LG L   A  A
Sbjct:  210 YALKRDPVSIGKPNSTMLDCIRAKHDFDPARTIMIGDRLDTDILFGKSGGVSTLLVMTGVTKESDITGPNAS-PVVPGYIVQSLGDLAVLANPA 302          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: A0A7S0ANX3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ANX3_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 2.400e-13
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   25 VVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERL 255
            +VVGKP+P +IRQL+ ++GL A + L+VGDRLDTD+ FG   G  + LVLTGVS   +   L       PTY+ +RL
Sbjct:  268 IVVGKPSPEVIRQLLERHGLKAEEVLVVGDRLDTDVRFGAGAGARTCLVLTGVSTREEAEALPFSD--RPTYIRDRL 342          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: UPI00099501BD (glycerol-3-phosphate phosphatase isoform X1 n=3 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI00099501BD)

HSP 1 Score: 72.4 bits (176), Expect = 5.260e-13
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   25 VVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGL-----QAGGDKTPTYLLERLGALLP 270
            VV+GKP+  + + LMNQ+ +   +TLM+GDR +TDI+FG+  G ++ LVLTGV+  SD+  L     Q   D  P Y +  LG LLP
Sbjct:  221 VVMGKPDEYMAKMLMNQSNIDPKRTLMIGDRCNTDILFGSRWGFTTLLVLTGVTSQSDLEKLKQSDRQEERDLIPDYYINSLGDLLP 307          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: UPI00040C18FB (HAD hydrolase-like protein n=1 Tax=Mesorhizobium sp. WSM3224 TaxID=1040986 RepID=UPI00040C18FB)

HSP 1 Score: 68.2 bits (165), Expect = 5.430e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 PVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGAL 264
            P  VGKPNP ++R  + + G+ A+ T+MVGDR+DTD++ G   G+ +ALVLTGVS  +D+          P +++ERL  L
Sbjct:   10 PYFVGKPNPFMMRSALERLGVGAADTIMVGDRMDTDVVAGLESGLKTALVLTGVSTRADMERFPF----RPDHVIERLADL 86          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: D2A390_TRICA (Phosphoglycolate phosphatase-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D2A390_TRICA)

HSP 1 Score: 72.0 bits (175), Expect = 6.670e-13
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   13 QVAPVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDK-----TPTYLLERLGALLP 270
            Q +P+VVGKPNP ++  L+ + G+   +TLM+GDR++TDI+ G   G  + LVL+GV+ + + V L+    K        + LE+LG +LP
Sbjct:  212 QRSPIVVGKPNPYIVDDLIKKYGIVPKRTLMIGDRVNTDILLGTRCGFQTLLVLSGVTTLKEAVALKNSHKKEDKEMVADFYLEKLGDILP 302          
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Match: G7E9B7_MIXOS (4-nitrophenylphosphatase n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E9B7_MIXOS)

HSP 1 Score: 71.2 bits (173), Expect = 1.420e-12
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    4 HAQQVAPVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGAL 264
            +A +  P+VVGKPN  ++  ++  + +   +TLM+GDRLDTDI FG  GG+ + LVLTGV +  D     A  +  P Y++E LG L
Sbjct:  211 YAVKNKPIVVGKPNQPMLDCILKTHDIDRERTLMIGDRLDTDIAFGKNGGIKTLLVLTGVQKREDYQAKDA--EVVPDYVIESLGDL 295          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60600.16709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G934_ECTSI2.330e-5095.70Haloacid dehalogenase-like hydrolase family protei... [more]
A0A836CPG6_9STRA2.080e-1847.83Haloacid dehalogenase-like hydrolase family protei... [more]
A0A7S4UNH5_GUITH6.490e-1651.19Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
M5E7Z7_MALS41.480e-1449.38Uncharacterized protein n=2 Tax=Malassezia sympodi... [more]
A0A067M178_9AGAM9.160e-1441.494-nitrophenylphosphatase n=1 Tax=Botryobasidium bo... [more]
A0A7S0ANX3_9DINO2.400e-1349.35Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
UPI00099501BD5.260e-1344.83glycerol-3-phosphate phosphatase isoform X1 n=3 Ta... [more]
UPI00040C18FB5.430e-1343.21HAD hydrolase-like protein n=1 Tax=Mesorhizobium s... [more]
D2A390_TRICA6.670e-1339.56Phosphoglycolate phosphatase-like Protein n=2 Tax=... [more]
G7E9B7_MIXOS1.420e-1242.534-nitrophenylphosphatase n=1 Tax=Mixia osmundae (s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60600contigEcto-sp13_S_contig60600:178..462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score171.4
Seed ortholog evalue2e-40
Seed eggNOG ortholog2880.D7G934
Model size285
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.phosphoglycolate phosphatase activity
EggNOG OGsCOG0647@1,KOG2882@2759
EC3.1.3.18,3.1.3.41,3.1.3.48
Cds size285
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463844.7005296-CDS-Ecto-sp13_S_contig60600:177..4621681463844.7005296-CDS-Ecto-sp13_S_contig60600:177..462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60600 178..462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60600.16709.1prot_Ecto-sp13_S_contig60600.16709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60600 178..462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60600.16709.1

>prot_Ecto-sp13_S_contig60600.16709.1 ID=prot_Ecto-sp13_S_contig60600.16709.1|Name=mRNA_Ecto-sp13_S_contig60600.16709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
LHAQQVAPVVVGKPNPLLIRQLMNQNGLAASQTLMVGDRLDTDIMFGNAG
GVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGALLPAATEA
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mRNA from alignment at Ecto-sp13_S_contig60600:178..462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60600.16709.1 ID=mRNA_Ecto-sp13_S_contig60600.16709.1|Name=mRNA_Ecto-sp13_S_contig60600.16709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60600:178..462+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACACGCGCAACAGGTGGCACCAGTGGTCGTCGGTAAACCCAACCCTCT CCTCATCCGCCAACTGATGAACCAGAATGGCCTCGCAGCATCCCAGACGC TCATGGTCGGCGACAGGTTGGACACGGACATAATGTTCGGAAACGCCGGA GGGGTTTCCAGCGCGCTGGTGTTGACAGGGGTCAGCGAGATGTCCGATGT CGTGGGGCTGCAGGCCGGTGGCGACAAAACGCCCACATATCTATTGGAGA GGTTGGGAGCTTTGTTGCCCGCAGCGACCGAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60600:178..462+

>mRNA_Ecto-sp13_S_contig60600.16709.1 ID=mRNA_Ecto-sp13_S_contig60600.16709.1|Name=mRNA_Ecto-sp13_S_contig60600.16709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60600:178..462+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACACGCGCAACAGGTGGCACCAGTGGTCGTCGGTAAACCCAACCCTCT
CCTCATCCGCCAACTGATGAACCAGAATGGCCTCGCAGCATCCCAGACGC
TCATGGTCGGCGACAGGTTGGACACGGACATAATGTTCGGAAACGCCGGA
GGGGTTTCCAGCGCGCTGGTGTTGACAGGGGTCAGCGAGATGTCCGATGT
CGTGGGGCTGCAGGCCGGTGGCGACAAAACGCCCACATATCTATTGGAGA
GGTTGGGAGCTTTGTTGCCCGCAGCGACCGAGGCA
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