mRNA_Ecto-sp13_S_contig6055.16699.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6055.16699.1
Unique NamemRNA_Ecto-sp13_S_contig6055.16699.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 5.950e-97
Identity = 140/157 (89.17%), Postives = 145/157 (92.36%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDRP 472
            MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYK AS   CDHFHDGLGFLTNHI I+NTFEASLQ VNPKLTLPYWDFTIE+STAGT G G +QS+ KSELFQESWFGTAD TD QVKDGRWAYTEIPKMKVNDPGA+EPDVYSKLRAPWNVNDRP
Sbjct:  291 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKGASPYECDHFHDGLGFLTNHIVITNTFEASLQTVNPKLTLPYWDFTIESSTAGTKGDGGYQSQTKSELFQESWFGTADPTDGQVKDGRWAYTEIPKMKVNDPGAVEPDVYSKLRAPWNVNDRP 447          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 1.070e-71
Identity = 106/156 (67.95%), Postives = 123/156 (78.85%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDR 469
            MFT+W VRVDGGNGKELYGD YADI+AINRLH+KAA+   CDHFHDGLGFL +H  ++NTFE SLQAVNPKLT+PYWDFTIETST+    +       ++ L   SWFGTAD  D  VKDGRWA +EIPK++ N+PG +EPDVY KLRAPWN NDR
Sbjct:  246 MFTIWDVRVDGGNGKELYGDGYADIYAINRLHHKAATHGTCDHFHDGLGFLVSHSVLTNTFEYSLQAVNPKLTVPYWDFTIETSTSTETVYDPASPYTRTPLLDASWFGTADLDDGMVKDGRWAKSEIPKVRDNNPGGLEPDVYGKLRAPWNTNDR 401          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.140e-71
Identity = 110/158 (69.62%), Postives = 129/158 (81.65%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQS--EMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDR 469
            M+TLW+VRV GGNGKELYGDDYADI+AINRLHYKAAS + CDHFHDGLGF+TNH  I+NTFE SLQ VNPKLT+PYWDFTI+ S+AG   FG+  S  E  S++F   WFGT D  D+ +KD RWA+T IP+M+VN+PG + PDVY KLRAPWNVNDR
Sbjct:  255 MYTLWTVRVKGGNGKELYGDDYADIYAINRLHYKAASPQDCDHFHDGLGFMTNHAVITNTFEYSLQRVNPKLTVPYWDFTIDGSSAG-GIFGESVSSAETYSKVFTPEWFGTYDEDDNMLKDSRWAFTPIPRMEVNNPGELTPDVYLKLRAPWNVNDR 411          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 3.970e-70
Identity = 111/158 (70.25%), Postives = 123/158 (77.85%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIE-TSTAGTNGFGKFQSEM-KSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDR 469
            MF LW VRVDGGNGKELYG+DYADI+AINRLHYKAAS   CDHFHDGLGFLT+H  ISNTFE SLQ VNPKLTLPYWDFTIE T   G  G       + +S LF+  WFGT D  D+ VKDGRWA+TEIP++  N+PG I+ DVY KLRAPWNVNDR
Sbjct:  275 MFALWEVRVDGGNGKELYGEDYADIYAINRLHYKAASQSSCDHFHDGLGFLTSHSMISNTFEFSLQKVNPKLTLPYWDFTIESTDVGGLEGTVDDGGPLTRSPLFRPDWFGTFDPEDNMVKDGRWAFTEIPRVFENNPGLIDTDVYGKLRAPWNVNDR 432          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.330e-67
Identity = 106/160 (66.25%), Postives = 125/160 (78.12%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGF----GKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDR 469
            M  LW+VRV  G+G+E YG++Y+DI+AINRLH+KAAS + CDHFHDGLGFLTNH  +SNTFE SLQ VNPKLTLPYWDFTIE+STAG          F S++K+ L QESWFGTAD T   V++GRWA   IPKM+  +P  IEPDVYSKLR+PWNVNDR
Sbjct:  233 MLELWNVRVQDGDGREKYGENYSDIWAINRLHFKAASPQFCDHFHDGLGFLTNHGLVSNTFENSLQQVNPKLTLPYWDFTIESSTAGIAANEHLDDMFGSKIKTPLLQESWFGTADPTTRMVQNGRWANVPIPKMREGNPSKIEPDVYSKLRSPWNVNDR 392          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.560e-67
Identity = 106/157 (67.52%), Postives = 120/157 (76.43%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDRP 472
            MFTLW VRVD GNGKELYGDDYADI+AINRLH+KAA +  CDHFHDGLGFLT+H  ISNTFE SLQ VNPKLTLPYWDFTIE   A    F     ++ S +FQESWFG+AD  D+ VKDGRWAYT++P M   +PG + PDVY  LR+ WNVN  P
Sbjct:  252 MFTLWDVRVDTGNGKELYGDDYADIYAINRLHFKAAMSETCDHFHDGLGFLTSHSLISNTFEYSLQRVNPKLTLPYWDFTIEDFEA-EKSFDDDDLKIVSPIFQESWFGSADPDDNIVKDGRWAYTKMPAMYPGNPGDLNPDVYGLLRSRWNVNSSP 407          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 6.060e-62
Identity = 100/157 (63.69%), Postives = 113/157 (71.97%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDRP 472
            M  LW+VRV GG G ELYGDDYADI +INRLH+KAA  + CDHFHDGLGFLT+H  ++NTFE SLQ VNPKLT+PYWDFTIE   A   G       + S LFQESWFGTAD  D+ VKDGRWA TEIP M +  PG + PDVY  LR+ W VN  P
Sbjct:  216 MHQLWAVRVHGGEGIELYGDDYADISSINRLHFKAAQNKSCDHFHDGLGFLTSHSVLTNTFEYSLQRVNPKLTVPYWDFTIEYHEAEIAGDDD-DITINSPLFQESWFGTADPVDNVVKDGRWARTEIPAMDLGSPGELIPDVYGLLRSRWTVNSSP 371          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: D8LB18_ECTSI (ShTK domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB18_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.890e-61
Identity = 99/157 (63.06%), Postives = 112/157 (71.34%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDRP 472
            M  LW+VRV GG G ELYGDDYADI +I+RLH+KAA  + CDHFHDGLGFLT+H  ++NTFE SLQ VNPKLT+PYWDFTIE   A   G       + S LFQESWFGTAD  D+ VKDGRWA TEIP M    PG + PDVY  LR+ W VN  P
Sbjct:   45 MHQLWAVRVHGGKGIELYGDDYADISSISRLHFKAAQNKSCDHFHDGLGFLTSHSMLTNTFEYSLQRVNPKLTVPYWDFTIEYHEAEIAGDDD-DITINSPLFQESWFGTADPVDNVVKDGRWARTEIPAMDPGSPGELIPDVYGLLRSRWIVNSSP 200          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 5.380e-61
Identity = 97/157 (61.78%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDRP 472
            M  +W+VRV GGNG EL+GD YADI +INRLH+KAA  + CDHFHDGLGFLT+H  ++NTFE SLQ VNPKLT+PYWDFTIE   A   G    +  + S LFQESWFGTAD  D+ VKDGRWA TEIP M  + PG + PDVY  LR+ W +N  P
Sbjct:  218 MHQIWTVRVSGGNGIELFGDGYADISSINRLHFKAAQNKSCDHFHDGLGFLTSHSMLTNTFEYSLQRVNPKLTVPYWDFTIEYHEAEIAGDDN-EMTINSPLFQESWFGTADPVDNVVKDGRWANTEIPAMDPSSPGELIPDVYGLLRSRWTINSSP 373          
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Match: A0A6H5K1R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R0_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 8.930e-43
Identity = 95/238 (39.92%), Postives = 111/238 (46.64%), Query Frame = 2
Query:    2 MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDH---------------------------------------------------------------------------------FHDGLGFLTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKSELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAPWNVNDRP 472
            M+TL  VRVD G GKELYGDDYADI+AI RLH KAA ++ CD                                                                                  FHDGLGFLT+H  ISNTFE S Q VNPKL+LPYWDFTIE + A  + F     +    LFQESWFG+AD  D+ VKD RWAYTEI +    +PG +  D+Y  L + WNVN  P
Sbjct:    1 MYTLRDVRVDTGKGKELYGDDYADIYAILRLHSKAAMSQTCDRVAFRMFSRVPVPWQTLFSARFETLPSGINNYAVSQLRVTRKLILPCRVNPRKARRELSHIDVICRLLCSSASSGTLSKLPQFHDGLGFLTSHFLISNTFEYSFQLVNPKLSLPYWDFTIEDTEAEIS-FDDDDLKTVPPLFQESWFGSADPDDNIVKDVRWAYTEIHREYSGNPGDLNSDMYGLLWSHWNVNSSP 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6055.16699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC46_ECTSI5.950e-9789.17Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
D8LC28_ECTSI1.070e-7167.95TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5J7R8_9PHAE1.140e-7169.62TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC42_ECTSI3.970e-7070.25TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5J676_9PHAE1.330e-6766.25TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5JRR4_9PHAE1.560e-6767.52TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7G9A4_ECTSI6.060e-6263.69Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D8LB18_ECTSI1.890e-6163.06ShTK domain containing protein n=1 Tax=Ectocarpus ... [more]
D7FW00_ECTSI5.380e-6161.78Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
A0A6H5K1R0_9PHAE8.930e-4339.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6055contigEcto-sp13_S_contig6055:244..2674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score115.5
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D7G0K0
Model size475
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
Cds size474
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.7635243-CDS-Ecto-sp13_S_contig6055:243..3661681463843.7635243-CDS-Ecto-sp13_S_contig6055:243..366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6055 244..366 -
1681463843.7766552-CDS-Ecto-sp13_S_contig6055:1130..13521681463843.7766552-CDS-Ecto-sp13_S_contig6055:1130..1352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6055 1131..1352 -
1681463843.7938023-CDS-Ecto-sp13_S_contig6055:2544..26731681463843.7938023-CDS-Ecto-sp13_S_contig6055:2544..2673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6055 2545..2673 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.8060603-UTR-Ecto-sp13_S_contig6055:2673..26741681463843.8060603-UTR-Ecto-sp13_S_contig6055:2673..2674Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6055 2674..2674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6055.16699.1prot_Ecto-sp13_S_contig6055.16699.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6055 244..2673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6055.16699.1

>prot_Ecto-sp13_S_contig6055.16699.1 ID=prot_Ecto-sp13_S_contig6055.16699.1|Name=mRNA_Ecto-sp13_S_contig6055.16699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MFTLWSVRVDGGNGKELYGDDYADIFAINRLHYKAASTRLCDHFHDGLGF
LTNHIAISNTFEASLQAVNPKLTLPYWDFTIETSTAGTNGFGKFQSEMKS
ELFQESWFGTADNTDSQVKDGRWAYTEIPKMKVNDPGAIEPDVYSKLRAP
WNVNDRP*
back to top

mRNA from alignment at Ecto-sp13_S_contig6055:244..2674-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6055.16699.1 ID=mRNA_Ecto-sp13_S_contig6055.16699.1|Name=mRNA_Ecto-sp13_S_contig6055.16699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2431bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6055:244..2674- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGTTCACGCTTTGGTCGGTGAGAGTGGACGGCGGCAACGGGAAGGAGC TCTACGGAGATGATTACGCGGATATTTTTGCCATCAACCGGCTGCACTAC AAGGCAGCAAGCACCAGACTGTGCGACCACGTGAGTTGTCGTTGGCTTGC ACGACACGCCTTCACGAGATGTATTCCACTTCACTTGACTTTGTAGAGCA TAATCGGGGCAAAACTCCTATTTTTTGTTTGTTTTGTATTGGGTATCTTC TGTTCTGCTGTAGACCTTGGCGATGGTGTCGAGTACACCTTAAAAAGGCG TGACATGGATGGCACCGGAAGGTCCGTATTCAGCACCACTGCAACACCAA CAAGGCCCTAGTGTGTGTTCTTGTACATCATAGCGATTGGGGAGATGGCA CGGGGTCCCATGAAGATAGCGTCCAAATTCCTCTCGCTACGGATCAACAA TATCCGTTCCTGGCCGCTTCCTCCAATGTTGAATCTGCCATATGTGTTAA AGCACAGGTGTGCCATCCCGTTGTTCGCATTCACTTCGGGTAGCCTGCAC TGAGCCATTAGGAAAAATAAATACACGCACATCCACAAAGACTACCCGTT CGAGATATTGCACTCGAACGGGATGATGTGGAGTCTTCTCAGTGGGTGGA GGAAAACCGTCTGGGTACTGGACACATTTGGAGTCTATTGAAGTCGATGT ACTGCTGATGATTCATGTCAGTGATACCAGCTGGTACCAACAAAAACATT TGTACAGGTAACCATCATGGAAGACATCTCCTGAACCAAATTGTATTGCC GAAGCACCGGCGATGGCATAACCTCAAGATCTGTCTGTAGCTTTTTCTCG TTTTTTGTCTTTTTTTCCTTGTGTGCGCACGGCGGTAGTGCACCAAGCAC GCAAGGTTAGGAGAGGTGCAGAACCCTACTGTAGGAGATAGATGCGCTCG TTCGGTCGTCCTCAAGCTGCTGAGGTTTGTTGACCAGAACAGGCCACGAC ACGCGCAGAGCACTCTTGGATATGGCTGATACATCCGGCCTACGTGCAAG CGGTCACATATGGGCTCCACAACGCCACACGAAACACGAAACCTTTGCGT ATTCTACGTAGAATTTACGGAGGGTGATCCGTCCTCTTTTTACAATTTTG TATTCTTCTTGAAGTATCGCGCACGAACCCACCGGTGCTTCTTTCGAGCA TGCACCAGTCCGAACTACGTTTCAATGTGATCGCGATAATATTTGTTGTC AGGGCACAAACAAACGATCTAATGGTGCTGGTTCGCCCTCCCCCCCCTGT GGCGTCTCTGCCCCTTCAACAGTTCCACGACGGTCTCGGCTTCTTGACCA ACCACATCGCGATTTCCAACACTTTTGAGGCCAGCCTACAGGCGGTGAAC CCCAAGCTGACTTTGCCGTACTGGGACTTCACGATCGAGACCTCTACCGC CGGTACTAACGGCTTTGGAAAGTTCCAGTCCGAGATGAAAAGTGAACTGT TCCAGGAGTCTTGGTTCGGAACTGCGGACAATACAGATAGCCAAGTAAGT GAGTTTTCTCTTTTCGGCTCCTCGCGCGGAGAGGCAAGAGGAGAGGCGGT TCTGAGGTCGAAAACAGGGTCATTGATTGGTCGTCGTCGAAGGCCACGGC GGGGAAACAAACCCCCCGGCACCCACCACCAATGGAGCGAACGGTAGTCT GACAGTCGATCGGAGTCAAACAAATACCGCACAAGGGTACACAGGGCAGC CAATCACGTGCGAGCGTAGCTCCTTCCCCTTTAACCGCGGAACCGCCTTT CGTTACGTCTAGTCAGGTTTTTGGGGCTTGACGAAGTTGTTGTATTCGCG TTTCTTGCAAGAACTGCAGTTGACGGAATCGGAAGCTGCCTTGAATGGAG GCATGGAGAGGAAGTATCCGTGCCTCCCGTGGCTCCCGAGTCGGAGTGTA CACTCTTTGACTTGGCGTACAATACCGTTCGGTAGGCGACGGCTGGCGAA CAAACGCTGTTTGCGACCAAATTTGTTTACCACAGCGTTGGCCTGCTAGA AGGAAGGGCGCTCCGAGGAAAATCTTAAAACGTTCCCAGAACCCGTCTTC GGAACACAGCAGAATCCTCGTGACCGTTCACTCCTGCCCTTACAATAAAG TGGAAAAAGACAGCAGTGGCATCACCTTCCGCGGCTGGCGAAGCCGCTCT CCCCCGACCAAACCCCCTCGTCTGTTTATGATGATCGTGCTAACGTCTTA TCCCATGACCCTCTTTCGTCTCTTTCTTGTGAAAACCTTTGTGGTTTCGT TTCATCAGGTGAAGGATGGCCGGTGGGCTTACACGGAGATCCCGAAGATG AAGGTCAACGACCCTGGCGCCATAGAGCCGGACGTGTACAGCAAGCTCCG TGCTCCGTGGAACGTCAACGACCGGCCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6055:244..2674-

>mRNA_Ecto-sp13_S_contig6055.16699.1 ID=mRNA_Ecto-sp13_S_contig6055.16699.1|Name=mRNA_Ecto-sp13_S_contig6055.16699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6055:244..2674- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCACGCTTTGGTCGGTGAGAGTGGACGGCGGCAACGGGAAGGAGCT
CTACGGAGATGATTACGCGGATATTTTTGCCATCAACCGGCTGCACTACA
AGGCAGCAAGCACCAGACTGTGCGACCACTTCCACGACGGTCTCGGCTTC
TTGACCAACCACATCGCGATTTCCAACACTTTTGAGGCCAGCCTACAGGC
GGTGAACCCCAAGCTGACTTTGCCGTACTGGGACTTCACGATCGAGACCT
CTACCGCCGGTACTAACGGCTTTGGAAAGTTCCAGTCCGAGATGAAAAGT
GAACTGTTCCAGGAGTCTTGGTTCGGAACTGCGGACAATACAGATAGCCA
AGTGAAGGATGGCCGGTGGGCTTACACGGAGATCCCGAAGATGAAGGTCA
ACGACCCTGGCGCCATAGAGCCGGACGTGTACAGCAAGCTCCGTGCTCCG
TGGAACGTCAACGACCGGCCGTGA
back to top