mRNA_Ecto-sp13_S_contig6055.16700.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6055.16700.1
Unique NamemRNA_Ecto-sp13_S_contig6055.16700.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6055.16700.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 1.130e-79
Identity = 138/169 (81.66%), Postives = 148/169 (87.57%), Query Frame = -3 
Query:    1 MAPRYARMKYGSVEDLTKSRRTVSPTPTAGGDDAGAAERVSFDFDPSRALRGESADDQGAGKRWFPLVVVGVLAMGVMIALTHAGYRLPKVTKTATDIGSQGQTPSLIRADEIKI--SEDLAVEDDDERHVARPFSVAGTSPRAEDETPAAAAEDRQLPGEEIPRLSFE 501
            M+ +YAR KYGSVED TKSRR VSPTPTA GDDAGAAERVSFDFDPSRALRGESADDQG GKRWF L V GVLA+GVM+ALTHAGYRLPKVT+T TD+GSQG TPSLIRADE KI  SEDLAVEDD+++ VARPF +A  SPRAEDETP AAAED QL GEEIPRLSFE
Sbjct:    1 MSLQYARQKYGSVEDPTKSRRAVSPTPTARGDDAGAAERVSFDFDPSRALRGESADDQGGGKRWFTLTVAGVLAVGVMMALTHAGYRLPKVTRTTTDVGSQGHTPSLIRADEAKILPSEDLAVEDDEKKQVARPFPIADVSPRAEDETPPAAAEDGQLSGEEIPRLSFE 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6055.16700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC46_ECTSI1.130e-7981.66Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6055contigEcto-sp13_S_contig6055:4113..4864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size752
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.6970997-UTR-Ecto-sp13_S_contig6055:4112..43201681463843.6970997-UTR-Ecto-sp13_S_contig6055:4112..4320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6055 4113..4320 +
1681463843.725728-UTR-Ecto-sp13_S_contig6055:4722..48641681463843.725728-UTR-Ecto-sp13_S_contig6055:4722..4864Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6055 4723..4864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.7091765-CDS-Ecto-sp13_S_contig6055:4320..47221681463843.7091765-CDS-Ecto-sp13_S_contig6055:4320..4722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6055 4321..4722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6055.16700.1prot_Ecto-sp13_S_contig6055.16700.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6055 4321..4722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6055.16700.1

>prot_Ecto-sp13_S_contig6055.16700.1 ID=prot_Ecto-sp13_S_contig6055.16700.1|Name=mRNA_Ecto-sp13_S_contig6055.16700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MSVAVFVTLGNRYPAWVRAIMTPMASTPTTTRGNHRFPAPWSSALSPRKA
RDGSKSKETLSAAPASSPPAVGVGETVRRDLVRSSTEPYFIRAYRGAMVV
PLSLPLSQLGRDVWLWECHRWGQIRGNLTSVTP*
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mRNA from alignment at Ecto-sp13_S_contig6055:4113..4864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6055.16700.1 ID=mRNA_Ecto-sp13_S_contig6055.16700.1|Name=mRNA_Ecto-sp13_S_contig6055.16700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=752bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6055:4113..4864+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGAATGATAACCGCGGGATCTCTTCTCCGGGGAGCTGCCTGTCCTCTG
CAGCAGCAGCAGGTGTCTCGTCCTCTGCACGCGGAGACGTGCCGGCTACC
GAAAACGGTCGAGCCACGTGCCGCTCGTCGTCGTCCTCCACCGCAAGGTC
TTCGCTGATCTTGATCTCGTCAGCGCGGATCAGGCTCGGAGTCTGGCCTT
GGCTGCCGATGTCTGTTGCTGTCTTCGTGACCTTGGGCAACCGGTATCCC
GCGTGGGTGAGGGCGATCATGACTCCCATGGCTAGCACCCCGACGACCAC
AAGGGGGAACCATCGCTTCCCTGCCCCTTGGTCGTCCGCGCTCTCGCCAC
GCAAGGCGCGCGACGGATCAAAGTCGAAAGAAACTCTTTCGGCAGCGCCG
GCATCATCACCACCGGCAGTTGGCGTTGGAGAGACGGTGCGCCGCGACTT
AGTCAGGTCTTCCACGGAGCCATACTTCATCCGAGCATATCGGGGTGCCA
TGGTGGTACCGCTCTCTCTCCCACTCTCGCAGCTCGGTAGGGACGTTTGG
CTGTGGGAGTGTCATAGATGGGGGCAGATTAGAGGGAATCTCACCAGCGT
GACTCCGTGACAATGGACTGCACAGGAGGAAGGAGCAGTCCCCCAAACAA
AGGTGCCGTGACCGAAAAACGTACCTTGTACCCTCCTCCCCATCTCTGCG
AACCAGGGACTGGCCGCCGCTGAACACAGGGACAGTCATGAGAAGGTGAA
AC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6055:4113..4864+

>mRNA_Ecto-sp13_S_contig6055.16700.1 ID=mRNA_Ecto-sp13_S_contig6055.16700.1|Name=mRNA_Ecto-sp13_S_contig6055.16700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6055:4113..4864+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGTTGCTGTCTTCGTGACCTTGGGCAACCGGTATCCCGCGTGGGT
GAGGGCGATCATGACTCCCATGGCTAGCACCCCGACGACCACAAGGGGGA
ACCATCGCTTCCCTGCCCCTTGGTCGTCCGCGCTCTCGCCACGCAAGGCG
CGCGACGGATCAAAGTCGAAAGAAACTCTTTCGGCAGCGCCGGCATCATC
ACCACCGGCAGTTGGCGTTGGAGAGACGGTGCGCCGCGACTTAGTCAGGT
CTTCCACGGAGCCATACTTCATCCGAGCATATCGGGGTGCCATGGTGGTA
CCGCTCTCTCTCCCACTCTCGCAGCTCGGTAGGGACGTTTGGCTGTGGGA
GTGTCATAGATGGGGGCAGATTAGAGGGAATCTCACCAGCGTGACTCCGT
GA
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