prot_Ecto-sp13_S_contig6054.16697.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6054.16697.1
Unique Name	prot_Ecto-sp13_S_contig6054.16697.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	198

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6054.16697.1 vs. uniprot
Match: D8LGS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS7_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 5.250e-113
Identity = 184/198 (92.93%), Postives = 187/198 (94.44%), Query Frame = 0

Query:    1 MAPAGLSGLAAYLVQGISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQFDPRNSSDGSEAGATLRPPVGGRTTSRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNVVTFHEDDWKTWKDVTEPTKVATASFFATAREGDEQRGPHHIASHGPARSKGQDQRDRVDDIRQDSSTAATTPEGR 198
            MAPAGLSGLAAYLVQ ISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQF+PRN SDGSE G TLRPPVGGR  SRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNV+TFHEDDWKTWKDVTEP KVATASFFATAREGDEQRGP HIASHGPARSKGQDQRD+ DDIRQ SSTAATT EGR
Sbjct:  103 MAPAGLSGLAAYLVQSISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQFNPRNPSDGSEGGTTLRPPVGGRMASRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNVITFHEDDWKTWKDVTEPIKVATASFFATAREGDEQRGPQHIASHGPARSKGQDQRDKGDDIRQGSSTAATTLEGR 300

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BLAST of mRNA_Ecto-sp13_S_contig6054.16697.1 vs. uniprot
Match: A0A6H5KDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ5_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 3.610e-98
Identity = 163/198 (82.32%), Postives = 165/198 (83.33%), Query Frame = 0

Query:    1 MAPAGLSGLAAYLVQGISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQFDPRNSSDGSEAGATLRPPVGGRTTSRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNVVTFHEDDWKTWKDVTEPTKVATASFFATAREGDEQRGPHHIASHGPARSKGQDQRDRVDDIRQDSSTAATTPEGR 198
            MAPAGLSGLAAYLVQ ISLQIPQPDRKGRVDMSKASLQFSPGPPPP FEFGPSQFD RN SDGSEAG TLRPPVGGRT SRVVWRGIRTLRRRAVLLACARN                     +TFHEDDWKTWKDVTEPTKVATASFFATAREGDEQR P HIASHGPARSK QDQRD+ DDIRQ SSTAATT EGR
Sbjct:  103 MAPAGLSGLAAYLVQSISLQIPQPDRKGRVDMSKASLQFSPGPPPPRFEFGPSQFDRRNPSDGSEAGDTLRPPVGGRTASRVVWRGIRTLRRRAVLLACARN---------------------ITFHEDDWKTWKDVTEPTKVATASFFATAREGDEQREPQHIASHGPARSKEQDQRDKGDDIRQGSSTAATTLEGR 279

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6054.16697.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6054.16697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LGS7_ECTSI	5.250e-113	92.93	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KDQ5_9PHAE	3.610e-98	82.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..11
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..198
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6054	contig	Ecto-sp13_S_contig6054:5075..7463 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6054.16697.1	mRNA_Ecto-sp13_S_contig6054.16697.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6054 5061..7463 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6054.16697.1 ID=prot_Ecto-sp13_S_contig6054.16697.1|Name=mRNA_Ecto-sp13_S_contig6054.16697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MAPAGLSGLAAYLVQGISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEF
GPSQFDPRNSSDGSEAGATLRPPVGGRTTSRVVWRGIRTLRRRAVLLACA
RNGPSMMIVRGWDSSMAWRMTNVVTFHEDDWKTWKDVTEPTKVATASFFA
TAREGDEQRGPHHIASHGPARSKGQDQRDRVDDIRQDSSTAATTPEGR