mRNA_Ecto-sp13_S_contig6054.16697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6054.16697.1
Unique NamemRNA_Ecto-sp13_S_contig6054.16697.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6054.16697.1 vs. uniprot
Match: D8LGS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS7_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 2.090e-115
Identity = 188/202 (93.07%), Postives = 191/202 (94.55%), Query Frame = 3 
Query:    3 GLKSMAPAGLSGLAAYLVQGISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQFDPRNSSDGSEAGATLRPPVGGRTTSRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNVVTFHEDDWKTWKDVTEPTKVATASFFATAREGDEQRGPHHIASHGPARSKGQDQRDRVDDIRQDSSTAATTPEGR 608
            GLKSMAPAGLSGLAAYLVQ ISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQF+PRN SDGSE G TLRPPVGGR  SRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNV+TFHEDDWKTWKDVTEP KVATASFFATAREGDEQRGP HIASHGPARSKGQDQRD+ DDIRQ SSTAATT EGR
Sbjct:   99 GLKSMAPAGLSGLAAYLVQSISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQFNPRNPSDGSEGGTTLRPPVGGRMASRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNVITFHEDDWKTWKDVTEPIKVATASFFATAREGDEQRGPQHIASHGPARSKGQDQRDKGDDIRQGSSTAATTLEGR 300
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BLAST of mRNA_Ecto-sp13_S_contig6054.16697.1 vs. uniprot
Match: A0A6H5KDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ5_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 8.090e-101
Identity = 167/202 (82.67%), Postives = 169/202 (83.66%), Query Frame = 3 
Query:    3 GLKSMAPAGLSGLAAYLVQGISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEFGPSQFDPRNSSDGSEAGATLRPPVGGRTTSRVVWRGIRTLRRRAVLLACARNGPSMMIVRGWDSSMAWRMTNVVTFHEDDWKTWKDVTEPTKVATASFFATAREGDEQRGPHHIASHGPARSKGQDQRDRVDDIRQDSSTAATTPEGR 608
            GLKSMAPAGLSGLAAYLVQ ISLQIPQPDRKGRVDMSKASLQFSPGPPPP FEFGPSQFD RN SDGSEAG TLRPPVGGRT SRVVWRGIRTLRRRAVLLACARN                     +TFHEDDWKTWKDVTEPTKVATASFFATAREGDEQR P HIASHGPARSK QDQRD+ DDIRQ SSTAATT EGR
Sbjct:   99 GLKSMAPAGLSGLAAYLVQSISLQIPQPDRKGRVDMSKASLQFSPGPPPPRFEFGPSQFDRRNPSDGSEAGDTLRPPVGGRTASRVVWRGIRTLRRRAVLLACARN---------------------ITFHEDDWKTWKDVTEPTKVATASFFATAREGDEQREPQHIASHGPARSKEQDQRDKGDDIRQGSSTAATTLEGR 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6054.16697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGS7_ECTSI2.090e-11593.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDQ5_9PHAE8.090e-10182.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6054contigEcto-sp13_S_contig6054:5061..7463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size610
Hectar predicted targeting categoryother localisation
Exons4
Cds size594
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.5710723-UTR-Ecto-sp13_S_contig6054:5060..50741681463843.5710723-UTR-Ecto-sp13_S_contig6054:5060..5074Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6054 5061..5074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.582726-CDS-Ecto-sp13_S_contig6054:5074..51051681463843.582726-CDS-Ecto-sp13_S_contig6054:5074..5105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6054 5075..5105 +
1681463843.5938375-CDS-Ecto-sp13_S_contig6054:5783..60581681463843.5938375-CDS-Ecto-sp13_S_contig6054:5783..6058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6054 5784..6058 +
1681463843.605797-CDS-Ecto-sp13_S_contig6054:6504..65671681463843.605797-CDS-Ecto-sp13_S_contig6054:6504..6567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6054 6505..6567 +
1681463843.6163905-CDS-Ecto-sp13_S_contig6054:7238..74631681463843.6163905-CDS-Ecto-sp13_S_contig6054:7238..7463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6054 7239..7463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6054.16697.1prot_Ecto-sp13_S_contig6054.16697.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6054 5075..7463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6054.16697.1

>prot_Ecto-sp13_S_contig6054.16697.1 ID=prot_Ecto-sp13_S_contig6054.16697.1|Name=mRNA_Ecto-sp13_S_contig6054.16697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MAPAGLSGLAAYLVQGISLQIPQPDRKGRVDMSKASLQFSPGPPPPPFEF
GPSQFDPRNSSDGSEAGATLRPPVGGRTTSRVVWRGIRTLRRRAVLLACA
RNGPSMMIVRGWDSSMAWRMTNVVTFHEDDWKTWKDVTEPTKVATASFFA
TAREGDEQRGPHHIASHGPARSKGQDQRDRVDDIRQDSSTAATTPEGR
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mRNA from alignment at Ecto-sp13_S_contig6054:5061..7463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6054.16697.1 ID=mRNA_Ecto-sp13_S_contig6054.16697.1|Name=mRNA_Ecto-sp13_S_contig6054.16697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2403bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6054:5061..7463+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGCCTCAAGTCCATGGCACCTGCGGGGCTCAGCGGGTTAGCAGGTAAG
GCAGGTACCATGGTTATAGCACGCTGTGTGCTGATACCTACGCATACAAC
CTGGTACCTGCGAAGCCTTGACACTAGTGCAACCGTAATCCTCTTGATGC
AGTCCTAATATTCTTGCTCGTATGCAGTCGACACCTTTCCTGGACACTTT
TGAAGACCCTATTCTACTCAATTCCCGTCGTCGAACTTCAACCGCTGGGT
TCACTCATGTGCCGTGCCATGATGTTATGACACATCACAACACACCGTTA
AGACATCATTTTCCTATTGGGTCATCCGAAGTCGCGACAATGATGGTGAA
TGTCATGACTCGGGCCATGGCCCACTTGGAGTAACTCGGTCATGACCTGT
CTTGGCAGAGCCGTGGTAGGTCATGACAGATCACTTCTCCGCCATGACCT
GTTCATGGCACGGTCATGACAGATGTGCCATTCCCTGCACTTCAAACTCA
ATATTTTGTGTTGCAGTGCGGACACGCAGGGGGCATGACTTGGTCATGGC
CAAGTCATTACCCGGACGTGGCACGGTATCCTCTAGCGCCGCTCCCTGTT
TCCTTTCACGGCCGGCAGAAGCGTTGGTAGTTCACGACATCGTGACCTCG
TGTGTGTCGAGGGTGAAAAAGTTGATGCGGTAGAAAGCAAAATTAGTATT
CCCCCCGCGCCCCTACCGTGCAGCATACTTGGTGCAAGGCATCTCGCTTC
AGATCCCGCAGCCAGACCGCAAGGGACGGGTGGACATGTCAAAGGCTTCG
CTGCAGTTCAGCCCAGGCCCACCACCGCCCCCGTTCGAGTTCGGCCCTTC
CCAGTTCGACCCAAGAAACTCTTCCGATGGCAGCGAAGCGGGCGCCACCT
TGAGGCCACCAGTGGGGGGCAGGACGACGAGCCGCGTCGTGTGGAGGGGC
ATCCGCACATTGAGGCGGCGAGCCGTGCTGCTGGCATGCGCTCGGAACGT
GAGCGTGCTTATGGATGATGCCACATCTTGATGCTTGTTTGGTGCTATAT
GTGCGAGGAAAGCGATCTCAGTGGAACGCGAGTCTATGAAACATGGAGCA
TGTCGTTGCAATTTTCGACAGTTGCCACCAGCACTTGAACAGTATCGCCA
GCCCTTACGACAACCGCCTTTGCCGAAGGGACTTGTCTCAAGTCACAAGT
GAGCCTTTCGGTGTTAATGTCATTTCTTTGTTCTGGATGTCCCTCCTTAC
ACTATTTTGGCGTAACTCTGGACGCACCAGCCGGGGTCGCACAGGAGGAA
GACCACACAGCAGAAGGAGGTGTGTTCTCCGCCTTCCTTGTGCGACGCCT
GCCTTGACTTTTTTGTACACCTGGAGGTTCGCTCACTCTCCTGTACGGAT
GGGGCCGTTGCGTCCTGCATACCTTCGTGTCCACACGCACGCAGGGTCCA
TCGATGATGATCGTTCGGGGATGGGACTCTTCCATGGCGTGGCGAATGAC
AAACGTGGTGAGTTGAATGGTAGAGAACAGCGAGCACTGAAGGCAAAAAG
AATACCAGTTACAGGAAGTTCTGCTTCCGAACAAACAGAGAAAAGAAAGG
AGAAAATAGTCGTCGAGTGATAGAAACCTTTCACAGCAGCTTCCGAGCAG
CTAACGTCATATTGCAGATGCAACCGCATGGTGACGTCGAGTTGGACGAG
TGTGTTATACGGTCATGGCAGAAATTCGAGTGTATGATAGACGGTGTGGG
AAAGTTTGGATGTATCTCAGTAAGACAAGGTGGAAGTGGTGAATGCCTAC
AGGAGTGATCGTGCTATCGCTGGAACCTACTGGGTAGCGGTTTTTGCTAT
TGGTAGTTGTGGGTGGGTGTTGCAAACAATGTGTACCTCCACAACAATTG
CATTCACTGCAGCGATCGATACGGAAACGAGATTTTCTACATACTGGTGC
CCCGAGAATTTACATATTGACCACTTCAGGATTGCGACGGTGTATCGTCA
TAGCCGCCGGCAACACGATTCACGGGCATCTAGAAAAGCGAAACTCGAAA
CGTTCGTTCTAGAGTAGGCCTTCGAACAAGTTTGCGCCAAATAATCACCA
CATTGAGATGCCCATAGTCGAATCTCCTACATGCTTGCACACGCCGCCCA
TCGTATTCCGTACCGAAACTGAAAGCAGGTCACCTTTCATGAAGATGATT
GGAAAACTTGGAAGGACGTGACCGAGCCAACAAAGGTGGCGACGGCTTCC
TTCTTTGCGACAGCAAGAGAAGGTGATGAGCAGCGGGGACCACATCACAT
CGCTTCGCATGGCCCAGCACGATCCAAAGGACAAGACCAACGCGACAGAG
TCGACGATATCCGACAAGACTCTTCCACCGCTGCCACCACGCCTGAAGGT
AGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6054:5061..7463+

>mRNA_Ecto-sp13_S_contig6054.16697.1 ID=mRNA_Ecto-sp13_S_contig6054.16697.1|Name=mRNA_Ecto-sp13_S_contig6054.16697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6054:5061..7463+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCTGCGGGGCTCAGCGGGTTAGCAGCATACTTGGTGCAAGGCAT
CTCGCTTCAGATCCCGCAGCCAGACCGCAAGGGACGGGTGGACATGTCAA
AGGCTTCGCTGCAGTTCAGCCCAGGCCCACCACCGCCCCCGTTCGAGTTC
GGCCCTTCCCAGTTCGACCCAAGAAACTCTTCCGATGGCAGCGAAGCGGG
CGCCACCTTGAGGCCACCAGTGGGGGGCAGGACGACGAGCCGCGTCGTGT
GGAGGGGCATCCGCACATTGAGGCGGCGAGCCGTGCTGCTGGCATGCGCT
CGGAACGGTCCATCGATGATGATCGTTCGGGGATGGGACTCTTCCATGGC
GTGGCGAATGACAAACGTGGTCACCTTTCATGAAGATGATTGGAAAACTT
GGAAGGACGTGACCGAGCCAACAAAGGTGGCGACGGCTTCCTTCTTTGCG
ACAGCAAGAGAAGGTGATGAGCAGCGGGGACCACATCACATCGCTTCGCA
TGGCCCAGCACGATCCAAAGGACAAGACCAACGCGACAGAGTCGACGATA
TCCGACAAGACTCTTCCACCGCTGCCACCACGCCTGAAGGTAGA
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