prot_Ecto-sp13_S_contig6052.16693.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6052.16693.1
Unique Nameprot_Ecto-sp13_S_contig6052.16693.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length364
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6052.16693.1 vs. uniprot
Match: D7G4J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J8_ECTSI)

HSP 1 Score: 539 bits (1388), Expect = 2.450e-187
Identity = 306/364 (84.07%), Postives = 314/364 (86.26%), Query Frame = 0 
Query:    1 LSATESGYFSFDQQIHTSIVPHELDAEGGIDIDYQITYGWRSSCTWARAEYTGTNGQEQAEEDSGCFGLAEKELLDETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVVDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKVTVGSGNMITGGSGVVFGGAHPTATAAAMSGLGAGGGMLPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESASPAGSESESGSVLSSWTGG 364
            LSATESGYFSFDQQIHTS VP ELDAEGGIDIDYQITYGWRSSCTW RAEYT +NG+E+A+EDSGCFGLAEKEL DETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTV+DVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPK TVGSGN++TGGSGVVFGGAHP ATAAAMSGLG                                           XXXXXXXXXESASPAGSESE+GSVLSSWTGG
Sbjct:    6 LSATESGYFSFDQQIHTSHVPDELDAEGGIDIDYQITYGWRSSCTWVRAEYTESNGEEKAKEDSGCFGLAEKELEDETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPPATAAAMSGLGX------------------------------------------XXXXXXXXXESASPAGSESENGSVLSSWTGG 327
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BLAST of mRNA_Ecto-sp13_S_contig6052.16693.1 vs. uniprot
Match: A0A6H5JHQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ9_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.320e-57
Identity = 112/133 (84.21%), Postives = 115/133 (86.47%), Query Frame = 0 
Query:  182 VVDVTIMVVVGMLACQDEEVDAAIATPQ----------------YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKVTVGSGNMITGGSGVVFGGAHPTATAAAMSGLGAGGGMLPG 298
            V+DVTIMVVVGMLACQDEEVDAAIATPQ                YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPK TVGSGN++TGGSGVVFGGAHPTATAAAMSGLG GGGMLPG
Sbjct:   12 VIDVTIMVVVGMLACQDEEVDAAIATPQIDTPRAVRLNSYLVFQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPTATAAAMSGLGPGGGMLPG 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6052.16693.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J8_ECTSI2.450e-18784.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHQ9_9PHAE2.320e-5784.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 176..196
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..119
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 131..156
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 157..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..130
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 197..364
NoneNo IPR availableTMHMMTMhelixcoord: 99..121
NoneNo IPR availableTMHMMTMhelixcoord: 176..195
NoneNo IPR availableTMHMMTMhelixcoord: 134..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6052contigEcto-sp13_S_contig6052:4437..8575 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6052.16693.1mRNA_Ecto-sp13_S_contig6052.16693.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6052 4435..8575 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6052.16693.1 ID=prot_Ecto-sp13_S_contig6052.16693.1|Name=mRNA_Ecto-sp13_S_contig6052.16693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=364bp
LSATESGYFSFDQQIHTSIVPHELDAEGGIDIDYQITYGWRSSCTWARAE
YTGTNGQEQAEEDSGCFGLAEKELLDETEAVLAGGRSMDADTGLAVALGH
AVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTC
VVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVVDVTIMVVVGMLACQDEE
VDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDA
SASSAPKVTVGSGNMITGGSGVVFGGAHPTATAAAMSGLGAGGGMLPGGS
GGGGGTLRMSAAAASASAHALGRFAAAAAATGGAGGGAAAGAESASPAGS
ESESGSVLSSWTGG
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