mRNA_Ecto-sp13_S_contig6052.16693.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6052.16693.1
Unique NamemRNA_Ecto-sp13_S_contig6052.16693.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6052.16693.1 vs. uniprot
Match: D7G4J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J8_ECTSI)

HSP 1 Score: 539 bits (1388), Expect = 2.450e-187
Identity = 306/364 (84.07%), Postives = 314/364 (86.26%), Query Frame = 1 
Query:    1 LSATESGYFSFDQQIHTSIVPHELDAEGGIDIDYQITYGWRSSCTWARAEYTGTNGQEQAEEDSGCFGLAEKELLDETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVVDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKVTVGSGNMITGGSGVVFGGAHPTATAAAMSGLGAGGGMLPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESASPAGSESESGSVLSSWTGG 1092
            LSATESGYFSFDQQIHTS VP ELDAEGGIDIDYQITYGWRSSCTW RAEYT +NG+E+A+EDSGCFGLAEKEL DETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTV+DVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPK TVGSGN++TGGSGVVFGGAHP ATAAAMSGLG                                           XXXXXXXXXESASPAGSESE+GSVLSSWTGG
Sbjct:    6 LSATESGYFSFDQQIHTSHVPDELDAEGGIDIDYQITYGWRSSCTWVRAEYTESNGEEKAKEDSGCFGLAEKELEDETEAVLAGGRSMDADTGLAVALGHAVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTCVVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVIDVTIMVVVGMLACQDEEVDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPPATAAAMSGLGX------------------------------------------XXXXXXXXXESASPAGSESENGSVLSSWTGG 327
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BLAST of mRNA_Ecto-sp13_S_contig6052.16693.1 vs. uniprot
Match: A0A6H5JHQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ9_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.320e-57
Identity = 112/133 (84.21%), Postives = 115/133 (86.47%), Query Frame = 1 
Query:  544 VVDVTIMVVVGMLACQDEEVDAAIATPQ----------------YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKVTVGSGNMITGGSGVVFGGAHPTATAAAMSGLGAGGGMLPG 894
            V+DVTIMVVVGMLACQDEEVDAAIATPQ                YTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPK TVGSGN++TGGSGVVFGGAHPTATAAAMSGLG GGGMLPG
Sbjct:   12 VIDVTIMVVVGMLACQDEEVDAAIATPQIDTPRAVRLNSYLVFQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDASASSAPKATVGSGNIMTGGSGVVFGGAHPTATAAAMSGLGPGGGMLPG 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6052.16693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J8_ECTSI2.450e-18784.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHQ9_9PHAE2.320e-5784.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6052contigEcto-sp13_S_contig6052:4435..8575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1094
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000360.1
Cds size1092
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6052.16693.1prot_Ecto-sp13_S_contig6052.16693.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6052 4437..8575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.2011197-CDS-Ecto-sp13_S_contig6052:4436..49011681463843.2011197-CDS-Ecto-sp13_S_contig6052:4436..4901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6052 4437..4901 -
1681463843.211725-CDS-Ecto-sp13_S_contig6052:5418..55021681463843.211725-CDS-Ecto-sp13_S_contig6052:5418..5502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6052 5419..5502 -
1681463843.2217536-CDS-Ecto-sp13_S_contig6052:6247..64281681463843.2217536-CDS-Ecto-sp13_S_contig6052:6247..6428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6052 6248..6428 -
1681463843.232568-CDS-Ecto-sp13_S_contig6052:6783..69681681463843.232568-CDS-Ecto-sp13_S_contig6052:6783..6968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6052 6784..6968 -
1681463843.25206-CDS-Ecto-sp13_S_contig6052:7951..80231681463843.25206-CDS-Ecto-sp13_S_contig6052:7951..8023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6052 7952..8023 -
1681463843.2707975-CDS-Ecto-sp13_S_contig6052:8470..85751681463843.2707975-CDS-Ecto-sp13_S_contig6052:8470..8575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6052 8471..8575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6052.16693.1

>prot_Ecto-sp13_S_contig6052.16693.1 ID=prot_Ecto-sp13_S_contig6052.16693.1|Name=mRNA_Ecto-sp13_S_contig6052.16693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=364bp
LSATESGYFSFDQQIHTSIVPHELDAEGGIDIDYQITYGWRSSCTWARAE
YTGTNGQEQAEEDSGCFGLAEKELLDETEAVLAGGRSMDADTGLAVALGH
AVAAAVASIHILFFVLLYFNIDPAPVRGYLYMRGLGLMSALTSFYLLFTC
VVSFFFAIKGSLDVNMSTSAGLRPSWAYVLTVVDVTIMVVVGMLACQDEE
VDAAIATPQYTSSSRDEDTVKRANGKLLHLRSKSGDTFCEASTSLNGPDA
SASSAPKVTVGSGNMITGGSGVVFGGAHPTATAAAMSGLGAGGGMLPGGS
GGGGGTLRMSAAAASASAHALGRFAAAAAATGGAGGGAAAGAESASPAGS
ESESGSVLSSWTGG
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mRNA from alignment at Ecto-sp13_S_contig6052:4435..8575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6052.16693.1 ID=mRNA_Ecto-sp13_S_contig6052.16693.1|Name=mRNA_Ecto-sp13_S_contig6052.16693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6052:4435..8575- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCGGCGACGGAATCGGGTTACTTCTCGTTCGACCAGCAGATCCACAC
GAGCATTGTGCCGCATGAATTGGACGCGGAAGGCGGCATCGACATCGACT
ACCAGGTGAAATAATGGGCTATCAACATCTTTGACACAAGATTACACACC
CCCTGGACCGATATCCAAAGCTCAATTTCTCTACCGCAGGAAGAGTCACA
GCGCCGAAAATAGCGGCGTTGGAACCGTCTCGTCGACAGCTTTTCGAAGT
TGTATGATTTCGTTTATTCATCCTCTTCGTCGTGGAGTAATCGAACTTTA
AGAATCGGTCCAGGGGGTGTGATAACTTGTGTCATTTACGGGATCCTGTT
CTGTTGTGTGGTCGGGGATTTTGATCTTCGCAGTACCTTTCAGTTAAGCA
CACGGAAAGTGTCACGACTTGAAGATGACATTCATAATGTACTTTAACGT
AAATAACACTCGTGTCTCAATTCTAGTATGTGGTTGTTATTTCCTCCATG
GATGTTTCCTGACCCAGTGTCATTGGGCATTTTCTCTCCCTACTTGCCTC
AGATCACGTACGGTTGGAGATCGTCGTGCACGTGGGCGAGAGCTGAGTAC
ACCGGCACTAATGGCCAAGAACAGGTATGCGTACGTGCAGTACTGCTGCT
TTTCGTACATGACCCGTACATACATTGCGTGCTAAATTGCGAGGAGAAAC
AAGGGACTCGGTGAAGGGGACAAGAGGTTTAGAACTCGTCGCACGATTCG
TTTAATTTTAAGGTTCCACTGCTGTCAGAGGTGTAGAACTCGTCGCACGA
TTCCTTTGATTTTGAGGTTCCACTGCTGTTGCACTTTGTGGGGTGAACGA
TTTGTTTCGTCTATGTTCGTCCCACCTGTCATAAAAACCTTCGACTACGC
TAGGCTGGGGTATTTATGTGAAAAGGACACAGGGATCACGCGGCCGTTCA
CGACCCCTGCCGTCAGTTTACGCAGTGGTTGAGAGGTGTAACGCTTTGCG
TCGCTAACTTTTGAGTTGGATTATGTGCACTCGCCAAAAAACGATTTTTC
GGGGCAAGAGCTATAAGTCTGGTAGGCCTTCTTCTCGTCCTTGAATTGGT
ACTAATACTAAGATACAGTAGGCGTGCAGACCTTGAAAGCGTACACTAGG
ATATGCCTGTAGACCTTGGATTTTTGTCTTTTCTTGTTTTCTGGAAGTTA
ACAAGAATTTGGCGTGCGATGGATCCTATGTTGTAGCAAATGCGGGAAAA
GAAGACAACGCATATTTAAGGGACCGAATACTTCACTCACAGGTGGATGA
AGGTTTTCCTTCTATCAAGTCCGCTGGGTACAGCGTTGCGCTTGATACTG
CTGTATAGGTTTTAGTACTGGGCTATGTTGTACCGGTTTCAGTCCAGGGG
CGCCTTGTCCACTGGGTTTTGCATTGATCTTGGGTGTATCTGGACGTCGA
GAGTTCGGGGGGTACGGTCCGATTTTCTTCCTCTACAGTAGAAGGCGGTG
CTTTGGTTCTCACGCGAAACATGACGCGAAATGCATCGGCAACAAACACC
TCGTGCTTATCGCCGCCTGTCTGCTCTCGGACACCACCGCCGTCACCACA
ACCCTAGGCGGAAGAAGATAGCGGGTGCTTTGGGCTGGCGGAGAAGGAGT
TGCTGGATGAGACGGAGGCGGTCCTTGCGGGAGGAAGGTCCATGGATGCC
GACACCGGGCTGGCGGTTGCGCTGGGCCACGCCGTGGCCGCAGCCGTAGC
CTCGATCCACATCCTCTTCTTCGTGCTGCTGTATTTCAACATGTGGGTGT
GGGTGTTTTTCGCTTGTCCCTCATTTGCGTAGCCCCCCCCCCCCCCGCTG
GTCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCTCCCGCCAC
GTGTGGAGCCTGGTCCGGTGAGAACCCGGCGCGGTCCGTCCCGGCTTCGT
AGGGATGCGAGGTTAATGGTCTAACGACTACGGCATGCACGACCACGAGT
ACACCCCCGTCCCCACCTGTTGCGTAATTTTCACGATGGCACTCTGCTTG
TTTTGAAGCATACCCATCCCCCCTTCAAGCTTTTTTGCGCATTCCTAATC
GCCCCCCCCCTCCCCCCCCCCTCCCCCCCTCTCACGACAAAAAACAGTGA
CCCAGCACCTGTTAGAGGCTACCTGTACATGCGAGGGCTGGGGCTGATGT
CGGCCCTGACGAGCTTCTACCTCCTCTTCACCTGCGTGGTATCGTTCTTC
TTTGCCATCAAGGGCAGCTTGGACGTTAACATGTCTACCTCCGCTGGTCT
TCGTCCCTCTTGGGCCTACGTACTCACGGTGAGTGAGAGGCCCACGGGGA
GTAGAACAGATCAGGCCGATGCAATCTAATCGTTTTGTTTGCCATTTTTT
TTTCAACTTGTTGTGCTGGTTCGGCCGATACAGGTTTTATCCTTTTTTGG
TTTGGTTGCCTTTTTTTTTTTAGTTGGCAAGGGCGGGTTAAAGGCGTACG
GCTTCGAAACTCGTCCCACTCCAAAAGTGTATATCGGATTTTTTTTCACT
GATACCATAACAGATATTGACGTCATCTGCTCGTGGAGGCGTTGGAACGT
CGGCCGCCAGCACATACCACGTCTTTTTTTTTTTTTTCTGATGTGACCGA
ACGAATCCATCTCTACCTAAAAAAATAGTCTAAGATGGATTGAATTTTGT
CACTTCTGAGACAAACATCTCGTTGCACTTGTCAAACTCGAAACTTACCT
TTGTGGTCGTCTGTACCGGCTGTTGCAAACGTCACTTGCATGGCCTATAC
CTGCCTTGCACTGCCTTGTGTCCATTGACACGTCAAGAGATGTAGGGGGC
ACCGCAGATTGATTCCTCTTGGTGGCACGTCCTGCGTTTCTCGACATTCG
TGTTTGAACAAGGGGGGTTGCCGGAAAAGCGAAAGGCTCTGTGTTCTTTC
CGTTTCTTACATGCTTTTCTTTTCCATTCTTTTATGGGTCTCAGGTTATC
GATGTTACGATCAGGTCGTGGGGATCCTGGCTTGTAACATGTTTTTTCTT
TTCCACTCTTTTATGGGTCTCAGGTTGTCGATGTTACGATCATGGTGGTC
GTGGGGATGCTGGCTTGCCAGGATGAGGAGGTTGATGCAGCCATTGCCAC
ACCACAGGTAAGGGCAAAAGCCACCACTGTAGAACCTTGCGGATTGCCTG
AGACTGATTTTTTCTACAAGGAACAACATGCCAACATCAACTATGCATCT
GTTACGGCCAAGCTTTGTGGTGCATCTCTTTGTGCCTGAAAGTCTTAGCT
CCCAGTTTATCAAGTGGCAACGTGTTTTGTTTACATCAGAAGCATTTTTG
GCGCCCTCATCATCCCATCTATTGCTGTCCTCGCCCCTTCAAGTAGTTTG
TCGTTTCTCTCTCTGCTTCAGTCCCTCCGGACATTGCTGTCCAGGGCCAT
TGCTATCCAGGGCCACGCAGTTATTATCCCTACCCCCCCCCCCTATCCCC
CCCCCACACACACTTCTTGTGCTGTGTTGCGGCAGGTCAGCATTCGGGAG
ACGTTGCCTGGTGCCCGTTTCATCTCGATTCATGTCAACAACAAAGCCGA
ACTGTGTCACAAACAAAGCTTGATAGATAGATACCCCCCGTGTCGTACGG
CTCAACTCGTACCTGTTCGTTCAGTACACGTCCTCTTCGAGAGACGAGGA
CACCGTCAAGCGCGCCAACGGAAAGCTGTTGCACCTGCGGTCCAAATCCG
GCGACACCTTCTGCGAAGCGTCCACATCCTTGAACGGACCGGACGCTTCG
GCCTCCTCCGCTCCGAAAGTCACCGTGGGTAGCGGCAACATGATCACCGG
CGGCAGCGGAGTAGTTTTCGGGGGCGCTCATCCCACCGCAACCGCCGCTG
CTATGAGCGGGCTAGGAGCAGGCGGCGGCATGCTGCCGGGCGGGAGCGGC
GGCGGGGGGGGTACGCTGAGAATGTCGGCAGCGGCGGCATCGGCGTCCGC
CCACGCGCTCGGTCGTTTTGCCGCCGCCGCCGCCGCCACCGGGGGGGCTG
GGGGGGGTGCTGCCGCCGGCGCGGAGTCGGCGTCGCCGGCCGGGAGCGAA
AGCGAGAGTGGCAGCGTCCTCAGCAGCTGGACCGGTGGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6052:4435..8575-

>mRNA_Ecto-sp13_S_contig6052.16693.1 ID=mRNA_Ecto-sp13_S_contig6052.16693.1|Name=mRNA_Ecto-sp13_S_contig6052.16693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6052:4435..8575- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCGGCGACGGAATCGGGTTACTTCTCGTTCGACCAGCAGATCCACAC
GAGCATTGTGCCGCATGAATTGGACGCGGAAGGCGGCATCGACATCGACT
ACCAGATCACGTACGGTTGGAGATCGTCGTGCACGTGGGCGAGAGCTGAG
TACACCGGCACTAATGGCCAAGAACAGGCGGAAGAAGATAGCGGGTGCTT
TGGGCTGGCGGAGAAGGAGTTGCTGGATGAGACGGAGGCGGTCCTTGCGG
GAGGAAGGTCCATGGATGCCGACACCGGGCTGGCGGTTGCGCTGGGCCAC
GCCGTGGCCGCAGCCGTAGCCTCGATCCACATCCTCTTCTTCGTGCTGCT
GTATTTCAACATTGACCCAGCACCTGTTAGAGGCTACCTGTACATGCGAG
GGCTGGGGCTGATGTCGGCCCTGACGAGCTTCTACCTCCTCTTCACCTGC
GTGGTATCGTTCTTCTTTGCCATCAAGGGCAGCTTGGACGTTAACATGTC
TACCTCCGCTGGTCTTCGTCCCTCTTGGGCCTACGTACTCACGGTTGTCG
ATGTTACGATCATGGTGGTCGTGGGGATGCTGGCTTGCCAGGATGAGGAG
GTTGATGCAGCCATTGCCACACCACAGTACACGTCCTCTTCGAGAGACGA
GGACACCGTCAAGCGCGCCAACGGAAAGCTGTTGCACCTGCGGTCCAAAT
CCGGCGACACCTTCTGCGAAGCGTCCACATCCTTGAACGGACCGGACGCT
TCGGCCTCCTCCGCTCCGAAAGTCACCGTGGGTAGCGGCAACATGATCAC
CGGCGGCAGCGGAGTAGTTTTCGGGGGCGCTCATCCCACCGCAACCGCCG
CTGCTATGAGCGGGCTAGGAGCAGGCGGCGGCATGCTGCCGGGCGGGAGC
GGCGGCGGGGGGGGTACGCTGAGAATGTCGGCAGCGGCGGCATCGGCGTC
CGCCCACGCGCTCGGTCGTTTTGCCGCCGCCGCCGCCGCCACCGGGGGGG
CTGGGGGGGGTGCTGCCGCCGGCGCGGAGTCGGCGTCGCCGGCCGGGAGC
GAAAGCGAGAGTGGCAGCGTCCTCAGCAGCTGGACCGGTGGG
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