mRNA_Ecto-sp13_S_contig60506.16690.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60506.16690.1
Unique NamemRNA_Ecto-sp13_S_contig60506.16690.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: A0A6H5KF61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF61_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.790e-43
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKIGMS 222
            ENYPSFLLLLGLAAINRP +AGVAGAIRLAGFVAYVIGYRTGNP+KRHKGAFGYIGLIT+LGCAIESAVKIGMS
Sbjct:   69 ENYPSFLLLLGLAAINRPIVAGVAGAIRLAGFVAYVIGYRTGNPEKRHKGAFGYIGLITMLGCAIESAVKIGMS 142          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: D7FIN3_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.050e-40
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKIGM 219
            ENYPSFLLLLGLAAINRPTIAGVAGA+RLAGFVAYVIGYRTG+P+KRH+GAFGYIGL+T+LGCAIES VK+ M
Sbjct:   69 ENYPSFLLLLGLAAINRPTIAGVAGAVRLAGFVAYVIGYRTGDPEKRHRGAFGYIGLLTMLGCAIESVVKVYM 141          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: D7FIN2_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN2_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 9.580e-30
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKIGMS 222
            ENYP FLLLLGLAAINRP  A VAGAIR+AGF+ YVI YR+G PD R KGAFGYIGL  +LGCA+E   K+ +S
Sbjct:   69 ENYPQFLLLLGLAAINRPKFAAVAGAIRVAGFIVYVITYRSGGPDNRRKGAFGYIGLFMMLGCALEFTTKLCIS 142          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: A0A7T1BY91_PROCL (Microsomal Glutathione S-transferase n=1 Tax=Procambarus clarkii TaxID=6728 RepID=A0A7T1BY91_PROCL)

HSP 1 Score: 89.0 bits (219), Expect = 2.990e-21
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKI 213
            ENYP FLL+LGL +I  P I+ + GA+ LAG +AY  GY TG P+ R  GAFGYIGL T++GCAI+    I
Sbjct:   43 ENYPQFLLMLGLGSIKYPLISSIGGAVWLAGRIAYFEGYSTGKPENRRLGAFGYIGLFTMMGCAIKGIYDI 113          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: A0A1V9Y7C0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7C0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.040e-19
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKI 213
            EN P F  LL  ++I RP  A +AG IR+AGF+AYV GY TG+P KR  GAFGY+GL   +G +IE+AV++
Sbjct:   70 ENLPVFFTLLATSSIFRPGYAAIAGGIRVAGFIAYVQGYATGDPTKRMNGAFGYLGLFAAIGLSIEAAVRL 140          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: R7UT15_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UT15_CAPTE)

HSP 1 Score: 84.0 bits (206), Expect = 4.980e-19
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKI 213
            E YP FL+LL L  I  PT+A  AGA+     + Y +GY TG+P KR++GAFGY+GL+TLLGCAI   +K+
Sbjct:   64 EGYPVFLMLLLLGGIPHPTLAAGAGALYQLSRIVYALGYYTGDPSKRNRGAFGYLGLLTLLGCAISLGLKL 134          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: H3GBW9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBW9_PHYRM)

HSP 1 Score: 84.0 bits (206), Expect = 6.240e-19
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKI 213
            EN P F  +L  ++I RPTIA VAG +R+AGFV YV GY +G+P KR +G FGY+G + +LG ++E+A+++
Sbjct:   73 ENLPLFYAMLATSSIYRPTIAAVAGVVRIAGFVMYVKGYSSGDPGKRRQGNFGYLGTLVMLGLSLEAALRL 143          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: A0A225WXS0_9STRA (Microsomal Glutathione S-transferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXS0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.240e-19
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKI 213
            E+ P F  +L  ++I RPTIA  AG +RLAGFV YV GY +G+P KR KG FGY+G++ +LG ++E+A+++
Sbjct:   73 EHLPLFYAMLATSSIYRPTIAAAAGVVRLAGFVMYVKGYSSGDPGKRRKGNFGYLGMLVMLGLSLEAALRL 143          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: A0A817NJP5_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817NJP5_9BILA)

HSP 1 Score: 82.8 bits (203), Expect = 9.630e-19
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKI 213
            ENYP FLL+LGL +I  P I+ + G I L G + Y  GY +G P+KR  GAFGYIG  T++GCAI++   +
Sbjct:   50 ENYPQFLLMLGLGSIQYPLISSIGGFIWLLGRIVYFHGYSSGQPEKRQYGAFGYIGFFTMMGCAIKTVYNL 120          
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Match: A0A817EKL4_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817EKL4_9BILA)

HSP 1 Score: 82.8 bits (203), Expect = 1.860e-18
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKGAFGYIGLITLLGCAIESAVKI 213
            ENYP FLL+LGL +I  P I+ + G I L G + Y  GY +G P+KR  GAFGYIG  T++GCAI++   +
Sbjct:   76 ENYPQFLLMLGLGSIQYPLISSIGGFIWLLGRIVYFHGYSSGQPEKRQYGAFGYIGFFTMMGCAIKTVYNL 146          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60506.16690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF61_9PHAE2.790e-4394.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIN3_ECTSI6.050e-4087.67Microsomal Glutathione S-transferase n=1 Tax=Ectoc... [more]
D7FIN2_ECTSI9.580e-3070.27Microsomal Glutathione S-transferase n=1 Tax=Ectoc... [more]
A0A7T1BY91_PROCL2.990e-2156.34Microsomal Glutathione S-transferase n=1 Tax=Proca... [more]
A0A1V9Y7C0_9STRA2.040e-1954.93Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
R7UT15_CAPTE4.980e-1953.52Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
H3GBW9_PHYRM6.240e-1950.70Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225WXS0_9STRA6.240e-1950.70Microsomal Glutathione S-transferase n=1 Tax=Phyto... [more]
A0A817NJP5_9BILA9.630e-1950.70Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817EKL4_9BILA1.860e-1850.70Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60506contigEcto-sp13_S_contig60506:38..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score111.3
Seed ortholog evalue2e-22
Seed eggNOG ortholog2880.D7FIN2
Model size225
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.leukotriene-C4 synthase activity
EggNOG OGs2CUIV@1,2S4E5@2759
EC2.5.1.18
Cds size225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463843.0103047-CDS-Ecto-sp13_S_contig60506:37..1421681463843.0103047-CDS-Ecto-sp13_S_contig60506:37..142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60506 38..142 -
1681463843.0279665-CDS-Ecto-sp13_S_contig60506:707..8271681463843.0279665-CDS-Ecto-sp13_S_contig60506:707..827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60506 708..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60506.16690.1prot_Ecto-sp13_S_contig60506.16690.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60506 38..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60506.16690.1

>prot_Ecto-sp13_S_contig60506.16690.1 ID=prot_Ecto-sp13_S_contig60506.16690.1|Name=mRNA_Ecto-sp13_S_contig60506.16690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
ENYPSFLLLLGLAAINRPTIAGVAGAIRLAGFVAYVIGYRTGNPDKRHKG
AFGYIGLITLLGCAIESAVKIGMS*
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mRNA from alignment at Ecto-sp13_S_contig60506:38..827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60506.16690.1 ID=mRNA_Ecto-sp13_S_contig60506.16690.1|Name=mRNA_Ecto-sp13_S_contig60506.16690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=790bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60506:38..827- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAACTACCCGTCTTTCCTGCTGCTCCTCGGGCTGGCGGCCATCAACCG ACCCACTATCGCGGGAGTCGCTGGAGCGATACGCCTGGCGGGTTTCGTCG CCTACGTCATAGGCTACAGGGTGAGCCTTTTTTTTTCGTTACATGCGCAG GCGCGTGTTGTCGGACTTATTTGGACACGAGGCGTTGTAGCGGGCACGTT TGACCAGGCTCTGCTTTGTGGAATTTTATTTTTTGGCGACCTGTGTGGAG TGAGAGCTGTCACCGGGAAACCCCACGTGCCCTCCTTTATTTGGTAATAG TTTTTCTTTTAGTTTCTTTCGTTACTTTTGGGGTGTCCGTGAGCGGTGAC GCTGATGTTGTTGCCCGTCTGTTCTCGCGGAAGACACCCCGCTTCCCCCA AGATATAAGTCAAGCCCCCCAAAAAGTAACCCAGGAGACACCATGGCATG TGTGTCACGCACGTTTAAGCTTTTTAGTAGCCACCTTTCAAGGAATGGCA TCCCGACGAAAGCTTGTCCTCGTTGTACCCCCGTCTCCCGCATTCCAGTT TTGTGCTTGTCGCAGGAGAGCCTGTGCGCCTTCCAGCTGCTTGTATTCCT GACACCGCCCCCCTCCCCGCGCTTGTTCGTTTGCTGTACTGCTGTACTGT ACTGCTGTGCTGTGCTGTACTGTACTGTACTGTAGACTGGAAACCCGGAC AAGAGGCACAAGGGGGCGTTCGGGTACATCGGGCTGATCACCTTGCTGGG ATGCGCTATCGAGTCTGCCGTGAAGATTGGCATGTCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60506:38..827-

>mRNA_Ecto-sp13_S_contig60506.16690.1 ID=mRNA_Ecto-sp13_S_contig60506.16690.1|Name=mRNA_Ecto-sp13_S_contig60506.16690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60506:38..827- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAACTACCCGTCTTTCCTGCTGCTCCTCGGGCTGGCGGCCATCAACCG
ACCCACTATCGCGGGAGTCGCTGGAGCGATACGCCTGGCGGGTTTCGTCG
CCTACGTCATAGGCTACAGGACTGGAAACCCGGACAAGAGGCACAAGGGG
GCGTTCGGGTACATCGGGCTGATCACCTTGCTGGGATGCGCTATCGAGTC
TGCCGTGAAGATTGGCATGTCCTAG
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